Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1159:7406-7500 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_10061.ps.pdf
Locus Name: Cluster_10061
AUAAUUAAUUUAUUCAUUGUAGUAAGGUUGUUGUUGCUUAAAACUAUUUGAAUUUUAAACAACAAUUACCUUUCUUUUAUGAAUGAAACAUUGCU
........(((((((((...((.(((((.(((((((.((((((.........)))))).))))))).))))).))...)))))))))........ (-23.40)
..AAUUAAUUUAUUCAUUGUAG......................................................................... len:20 al:1
...AUUAAUUUAUUCAUUGUAG......................................................................... len:19 al:5
.....UAAUUUAUUCAUUGUAG......................................................................... len:17 al:1
....................AGUAAGGUUGUUGgUGCU......................................................... len:18 al:2
.....................GUAAGGUUGUUGUUGCUUAAAACa.................................................. len:24 al:2
.....................GUAAGGUUGUUGUUGCU......................................................... len:17 al:1
.....................GUAAGGUUGUUGgUGCUU........................................................ len:18 al:18
.....................GUAAGGUUGUUGUUGCUU........................................................ len:18 al:4
.....................GUAAGGUUGUUGUUGCUUAAAAu................................................... len:23 al:10
.....................GUAAGGUUGUUGgUGCUUAAAA.................................................... len:22 al:25
.....................GUAAGGUUGUUGgUGCUUAAA..................................................... len:21 al:3
.....................GUAAGGUUGUUGUUGCUUAAAACUAUUU.............................................. len:28 al:2
.....................GUAAGGUUGUUGUUGCUUAAAAC................................................... len:23 al:1
.....................GUAAGGUUGUUGUUGCUUAAAg.................................................... len:22 al:1
.....................GUAAGGUUGUUGgUGCUUAA...................................................... len:20 al:4
.....................GUAAGGUUGUUGUUGCUUAAAA.................................................... len:22 al:16
.....................GUAAGGUUGUUGUUGCUUAAAuC................................................... len:23 al:1
.....................GUAAGGUUGUUGgUGCUUAAAACU.................................................. len:24 al:7
.....................GUAAGGUUGUUGUUGCgU........................................................ len:18 al:1
.....................GUAAGGUUGUUGgUGCUUA....................................................... len:19 al:2
.....................GUAAGGUUGUUGUUGCUUAAAu.................................................... len:22 al:2
.....................GUAAGGUUGUUGgUGCUUAAAAC................................................... len:23 al:13
.....................GUAAGGUUGUUGUUGCUUAAAACU.................................................. len:24 al:7
......................UAAGGUUGUUGgUGCU......................................................... len:16 al:5
......................UAAGGUUGUUGcUGCUUAAAACU.................................................. len:23 al:6
......................UAAGGUUGUUGUaGCUUAAAACU.................................................. len:23 al:2
......................UAAGGUUGUUGUUGCUUAAAAa................................................... len:22 al:3
......................UAAGGUUGUUGgUGCUUAAAACUAUUUGAAU.......................................... len:31 al:10
......................UAAGGUUGUUGUcGCUUAAAACU.................................................. len:23 al:2
......................UAAGGUUGUUGUUGCUUAAAc.................................................... len:21 al:2
......................UAAGGUUGUUGUUGCUUAAAAuU.................................................. len:23 al:3
......................UAAGGUUGUUGUUGCUUAAAACa.................................................. len:23 al:33
......................UAAGGUUGUUGUUGCUUu....................................................... len:18 al:5
......................UAAGGUUGUUGUUGCUUAgAACU.................................................. len:23 al:2
......................UAAGGUUGUUGUUGCUUA....................................................... len:18 al:10
......................UAgGGUUGUUGUUGCUUAAAACU.................................................. len:23 al:8
......................UAAGGUUGUUGUUGCUUAAAgCU.................................................. len:23 al:7
......................UAAGGUUGUUGgUGCUUAA...................................................... len:19 al:24
......................UAAGGUUGUUGUUGCUUAAgACU.................................................. len:23 al:4
......................UAAGGUUGUUGUUGCUUAAAAu................................................... len:22 al:12
......................UAAGGUUGUUGUUGCUUAAAACUAUUUGAAU.......................................... len:31 al:9
......................UAAGGUUGcUGUUGCUUAAAACU.................................................. len:23 al:2
......................UAAGGUUGUUGUUGCUUAAu..................................................... len:20 al:12
......................UAAGGcUGUUGUUGCUUAAAACU.................................................. len:23 al:7
......................cAAGGUUGUUGUUGCUUAAAACU.................................................. len:23 al:11
......................UAAGGUUGUUGUUGCUU........................................................ len:17 al:1
......................UAAGGUUGUUGUUGCUUAAA..................................................... len:20 al:67
......................UgAGGUUGUUGUUGCUUAAAACU.................................................. len:23 al:3
......................UAAGGUUGUUGUUGCUUAAAACUu................................................. len:24 al:8
......................UAAGGUUGUUGgUGCUUAAA..................................................... len:20 al:71
......................UAAGGUcGUUGUUGCUUAAAAC................................................... len:22 al:1
......................UAAGGUUGUUGUUGCUUAAAACU.................................................. len:23 al:1471
......................UAAGGUUGcUGUUGCUUA....................................................... len:18 al:1
......................UAAGGUUaUUGUUGCUUAAAACU.................................................. len:23 al:1
......................UAAGGUUGUUGUUGCUUAAAu.................................................... len:21 al:28
......................UAAaGUUGUUGUUGCUUAAAACU.................................................. len:23 al:1
......................UAAGGUUGUUGUUGCcUAAAACU.................................................. len:23 al:7
......................UAAGGUUGUUGUUGCUUAAAAaUA................................................. len:24 al:1
......................UAAGGUUGUUGUUGCUUAAAuC................................................... len:22 al:1
......................UAAGGUUGUUGUUGuUUAAAACU.................................................. len:23 al:2
......................UAAGGUUGUUGUUGCUcAAAACU.................................................. len:23 al:1
......................aAAGGUUGUUGUUGCUUAAAACU.................................................. len:23 al:3
......................UAAGGUUGUUGUUGCUUgAAACU.................................................. len:23 al:1
......................UAAGGUUGUUGgUGCUUA....................................................... len:18 al:42
......................UAAGGUUGUgGUUGCUUAAAACU.................................................. len:23 al:1
......................UAAGGUUGUUGgUGCUUAAAACUA................................................. len:24 al:1
......................UAAGGUUGUUGgUGCUUAAAAC................................................... len:22 al:53
......................UAAGGUUGUUGUUGCUUAu...................................................... len:19 al:4
......................UAAGGUUGUUaUUGCUUAAAACU.................................................. len:23 al:1
......................UAAGGUUGUUGUUGCUUAAuACU.................................................. len:23 al:1
......................UAAGGUUGUUGUUGCUUAAAACg.................................................. len:23 al:10
......................UAAGGUUGUUGUUGCU......................................................... len:16 al:4
......................UAAGGUUGUUGUUGCUUAAAACUAUUUGAc........................................... len:30 al:1
......................UAAGGUUGUUGUUGCUUAAAACc.................................................. len:23 al:154
......................UAAGGUUGUUGUUGCUUAAAAaU.................................................. len:23 al:4
......................UAAGGUUGUUGgUGCUUAAAACU.................................................. len:23 al:843
......................UAAGGUUGUcGUUGCUUAAAACU.................................................. len:23 al:13
......................UAAGGUUGUUGUUGCUUAAAA.................................................... len:21 al:20
......................UAAGGUUGUUGUUGCUUAA...................................................... len:19 al:13
......................UAAGGUUGUUGgUGCUUAAAA.................................................... len:21 al:32
......................UAAGGUUGUUGUUGCUUAAAACUAUUUGAu........................................... len:30 al:1
......................UAAGGUUGUUGUUGCcUAAAACUAUUUGAAU.......................................... len:31 al:1
......................cAAGGUUGUUGUUGCUUAAAAC................................................... len:22 al:1
......................UAAGGUcGUUGUUGCUUAAAACU.................................................. len:23 al:6
......................UAAGGUUGUUGUUGCUaAAAACU.................................................. len:23 al:1
......................UAAGGUUGUUGUUGCUUAAAACUAUUUu............................................. len:28 al:3
......................UAAGGUUGUUGUUGCUUAAAcCU.................................................. len:23 al:4
......................UAAGGUUGUUGUUGCUUAAc..................................................... len:20 al:1
......................UAAuGUUGUUGUUGCUUAAAACU.................................................. len:23 al:2
......................UAAGGUaGUUGUUGCUUAAAACU.................................................. len:23 al:2
......................UAAGGUUGUUGUUGCUUAAAAC................................................... len:22 al:42
......................UAAGGUUGUUGUUGCUUAgA..................................................... len:20 al:1
......................UAAGGUUGUUGUUGCUUAAAAg................................................... len:22 al:1
......................UgAGGUUGUUGUUGCUUAAAACUAUUUGAAU.......................................... len:31 al:1
......................UAAGGUUGUUGgUGCUU........................................................ len:17 al:5
.......................AAGGUUGUUGgUGCUUAAAACUAUUUGAAU.......................................... len:30 al:1
........................AGGUUGUUGgUGCUUAAAA.................................................... len:19 al:13
........................AGGUUGUUGUUGCUUAAAACc.................................................. len:21 al:2
........................AGGUUGUUGUUGCUUAAAACU.................................................. len:21 al:20
........................AGGUUGUUGUUGCUUAAAACa.................................................. len:21 al:2
........................AGGUUGUUGUUGCUUAAAAC................................................... len:20 al:2
........................AGGUUGUUGgUGCUUAAAAC................................................... len:20 al:10
........................AGGUUGUUGgUGCUUAAAACU.................................................. len:21 al:5
........................AGGUUGUUGUUGCUUAAAu.................................................... len:19 al:6
.........................GGUUGUUGgUGCUUAAAACUA................................................. len:21 al:1
.........................GGUUGUUGUUGCUUAAAAu................................................... len:19 al:3
.........................GGUUGUUGUUGCUUAAAACU.................................................. len:20 al:2
.........................GGUUGUUGgUGCUUAAAACU.................................................. len:20 al:14
..........................GUUGUUGUUGCUUAAAACU.................................................. len:19 al:2
.................................gUGCUUAAAACUAUUUGAAU.......................................... len:20 al:1
........................................AAACUAUUUGAAUUUUAAACAACAAUU............................ len:27 al:1
............................................UAUUUGAAUUUUAAACAACAAUUACCUUU...................... len:29 al:1
.............................................AUUUGAAUUUUAAACAACAAUUACCUUUCg.................... len:30 al:1
.............................................AUUUGAAUUUUAAACAACAAUUACCUUUCU.................... len:30 al:3
....................................................UUUUAAACAgCAAUUACCUUUCU.................... len:23 al:1
....................................................UUUUAAACAACAAUUACCUUUCUUUUu................ len:27 al:3
....................................................UUUUAAgCAACAAUUACCUUUCU.................... len:23 al:1
....................................................UUUUAAACAACAAUUACCUUUCUU................... len:24 al:11
....................................................UUcUAAACAACAAUUACCUUUCU.................... len:23 al:2
....................................................UUUUAgACAACAAUUACCUUUC..................... len:22 al:1
....................................................UUUUAAACgACAAUUACCUUUCU.................... len:23 al:79
....................................................UUUUAAACAACAAUUACCUUUuU.................... len:23 al:2
....................................................UUUUAAACgACAAUUACCU........................ len:19 al:2
....................................................UcUUAAACAACAAUUACCUUUCU.................... len:23 al:2
....................................................UUUUAAACAACAAUUACCUUUaUU................... len:24 al:1
....................................................UUUUAAACAACAAUUACCUUUCg.................... len:23 al:3
....................................................UUUUAAACAACAAUUACCcUUCU.................... len:23 al:6
....................................................UUUUAAACAACAAUUACCUUUCUUUU................. len:26 al:4
....................................................UUUUAAACgACAAUUACCUUUCUU................... len:24 al:6
....................................................UUUUAAACAcCAAUUACCUUUCU.................... len:23 al:1
....................................................UUUUAAACgACAAUUACCUUU...................... len:21 al:21
....................................................UUUUAAACAACAAUUACCUUU...................... len:21 al:111
....................................................UUUUgAACAACAAUUACCUUUCU.................... len:23 al:2
....................................................UUUUAAACAACAAcUACCUUUCU.................... len:23 al:1
....................................................UUUUgAACAACAAUUACCUUUCUUU.................. len:25 al:2
....................................................UUUUAAACAACAAUUACCUUUa..................... len:22 al:1
....................................................UUUUAAACAACAAUUACCUU....................... len:20 al:12
....................................................UUUUAAACAACAAUUACCUaUCU.................... len:23 al:1
....................................................UUUUAAACgACAAUUACCUU....................... len:20 al:5
....................................................UUUUAAACAACAAUUACCUUUuUU................... len:24 al:3
....................................................UUUUAAACAACAAcUACCUU....................... len:20 al:1
....................................................UUUUAAACAACAAUUgCCUUUCU.................... len:23 al:2
....................................................UUUUAAACAACAAUUACCUUUCc.................... len:23 al:68
....................................................UUUUAAACAACAAUUACCUUc...................... len:21 al:4
....................................................gUUUAAACAACAAUUACCUUU...................... len:21 al:1
....................................................UUUUAAACAACAgUUACCUUUCU.................... len:23 al:2
....................................................UUUUAAACAACAAUUACCUUcCU.................... len:23 al:2
....................................................UUUUAAACAACAAcUACCUUU...................... len:21 al:2
....................................................UUUUAAACAACAAUUAuCUUUCU.................... len:23 al:1
....................................................UUUUAAACAACAAUUACCUUUCaU................... len:24 al:2
....................................................UUUUAAACgACAAUUACCUUUC..................... len:22 al:11
....................................................UUUUAAACAACAAUUACCUUUCUUU.................. len:25 al:6
....................................................UUUUAAACAACAAUUACCUUUCUaU.................. len:25 al:5
....................................................UUUUAAACAACAAUUACCUgU...................... len:21 al:2
....................................................UUUUAgACAACAAUUACCUUUCU.................... len:23 al:2
....................................................cUUUAAACAACAAUUACCUUUCU.................... len:23 al:6
....................................................UUUUAAACAACAAUUACCUUUCU.................... len:23 al:562
....................................................UUUUAAACuACAAUUACCUU....................... len:20 al:2
....................................................UUUUAAACAACAAUUACCUUUC..................... len:22 al:37
....................................................UUUUAAACAACAAUUACCUUUCa.................... len:23 al:6
....................................................UUUUAAACAACAAUUAaCUUUCU.................... len:23 al:1
....................................................UUUUAAACAACAAaUACCUUUCU.................... len:23 al:2
....................................................UUUUAAACAACAAUUACCaUUCU.................... len:23 al:2
....................................................UUUUAAACgACAAUUACCUUUCUUU.................. len:25 al:6
.....................................................UUUAAACAACAAUUACCUUUCUUU.................. len:24 al:1
.....................................................UUUAAACAACAAUUACCUUUCUUc.................. len:24 al:2
.....................................................UUUAAACAACAAUcACCUUUCU.................... len:22 al:1
.....................................................UUUAAACAACAAUUACCUUUCU.................... len:22 al:37
.....................................................UUUAAACAACAAUUgCCUUUC..................... len:21 al:1
.....................................................UUUAAACAACAAUUACCUUUCUU................... len:23 al:4
.....................................................UUUAAACAACAAUUACCUUUC..................... len:21 al:3
.....................................................UUUAAACAACAAUUAuCUUUCU.................... len:22 al:1
.....................................................UUUAAACgACAAUUACCUUUCU.................... len:22 al:2
.....................................................UUUAAACAACAAUUACCUUUCc.................... len:22 al:5
.....................................................UUUAAACAACAAUgACCUUUCU.................... len:22 al:1
......................................................UUAAACAACAAUUACCUUc...................... len:19 al:1
......................................................UUAAACAACAAUUACCUUU...................... len:19 al:30
......................................................UUAAAuAACAAUUACCUUUCU.................... len:21 al:2
......................................................UUAAACAACAAUUACCUUUCUUaU................. len:24 al:9
......................................................UUAAACAACAAUUACCUUUCaU................... len:22 al:2
......................................................UUAAACAACAAUUACCUUUgU.................... len:21 al:1
......................................................UUAAACAACAAUUACCUUUCc.................... len:21 al:86
......................................................UUAAACAACAAUUACCUUUCUUUU................. len:24 al:5
......................................................UUAAACAACAAUUACCUUcCU.................... len:21 al:1
......................................................UUAAACAACAAUUACCUU....................... len:18 al:10
......................................................UUAAACAuCAAUUACCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAUUACCaUUCUU................... len:22 al:1
......................................................UUAAACAgCAAUUACCUUUCUUU.................. len:23 al:1
......................................................UUAAACAACAAUUACCUUUCUUUc................. len:24 al:2
......................................................UUAAACAACAAUUACCUUUCUU................... len:22 al:45
......................................................UUAAACAACAAUUACCUUUa..................... len:20 al:2
......................................................UUAAACAAuAAUUACCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAcUACCUUUC..................... len:20 al:1
......................................................UUAAACAACAAUUACCUUUCUaUUAU............... len:26 al:14
......................................................UUAAACgACAAUUACCUUUCUUUU................. len:24 al:1
......................................................UUAAACAACAAUUACCUUUuU.................... len:21 al:2
......................................................cUAAACAACAAUUACCUUUCU.................... len:21 al:2
......................................................UUAAACAACAAUUACCUUUCUUUUu................ len:25 al:4
......................................................UUAAACAACAAUUACCcUUCU.................... len:21 al:3
......................................................UUAAACAACAAUUACCUUUuUU................... len:22 al:6
......................................................UUgAACAACAAUUACCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAUUAuCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAUcACCUUUCU.................... len:21 al:3
......................................................UUAAACgACAAUUACCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAUUACCUUUCUg................... len:22 al:1
......................................................UUAAACAACAAUUgCCUUUCUUU.................. len:23 al:1
......................................................UUAgACAACAAUUACCUUUCU.................... len:21 al:4
......................................................UUAAACAACAAUUACCUUUCUUa.................. len:23 al:2
......................................................UUAAACAACAAUUACCUUUCg.................... len:21 al:8
......................................................UUAgACAACAAUUACCUUUCUU................... len:22 al:1
......................................................UcAAACAACAAUUACCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAUUACCUUUCUaUUA................ len:25 al:3
......................................................UUAAACAACAAUUACCUUUCaUUU................. len:24 al:1
......................................................UUAAgCAACAAUUACCUUUCUUU.................. len:23 al:1
......................................................UUAAACAACAAUUACCUUUC..................... len:20 al:41
......................................................UUAAACAACAAUUACCUUUCgU................... len:22 al:1
......................................................UUAAACAACAAUUACCUUUCUaUU................. len:24 al:166
......................................................aUAAACAACAAUUACCUUUCU.................... len:21 al:1
......................................................UUAAACAACAAUUACCUUUCUgU.................. len:23 al:6
......................................................UUAAACAgCAAUUACCUUUCU.................... len:21 al:4
......................................................UUAAACAACAAUUACCUUUCUUU.................. len:23 al:41
......................................................UUAAgCAACAAUUACCUUUCU.................... len:21 al:8
......................................................UUAAACAACAAUUgCCUUUCU.................... len:21 al:2
......................................................UUAAACAACAAUUACCUUUCUUg.................. len:23 al:1
......................................................UUAAACAACAAUUACCUUUCUc................... len:22 al:3
......................................................UUAAACAACAAUUACCUUUCa.................... len:21 al:21
......................................................UUAAACAACAAUUACCUUUCU.................... len:21 al:922
......................................................UUAAACAACAAUUACCcU....................... len:18 al:1
......................................................aUAAACAACAAUUACCUUU...................... len:19 al:1
......................................................UUAAACAACAAUUACCUUUCUaU.................. len:23 al:584
......................................................UUAAACAACAgUUACCUUUCU.................... len:21 al:5
......................................................UUAAACAACAAcUACCUUUCU.................... len:21 al:3
......................................................UUAAACgACAAUUACCUUUCUU................... len:22 al:1
......................................................UUAAACAACAAUUACCUUUCUUc.................. len:23 al:2
......................................................UUAAACAACAAUUACCUUUCUcU.................. len:23 al:4
......................................................UUAAACAACAAUUgCCUUUCUU................... len:22 al:1
.......................................................UAAACAACAAUUACCUUUCUaUU................. len:23 al:3
.......................................................UAAACAACAAUUACCUUUCUaU.................. len:22 al:13
.......................................................UAAACAACAAUUACCUUUCU.................... len:20 al:19
.......................................................UAAACAACAAUUACCUUUCc.................... len:20 al:2
.......................................................UAgACAACAAUUACCUUUCU.................... len:20 al:1
.......................................................UAAACAACAAUUACCUUUCUUaU................. len:23 al:2
.......................................................UAAACAACAAUUACCUUUCUc................... len:21 al:1
.......................................................UAAACAACAAUUgCCUUUCU.................... len:20 al:1
.......................................................UAAACAACAAUUACCUUUCgU................... len:21 al:1
.......................................................UAAACAACAAUUACCUUUCUgU.................. len:22 al:1
.......................................................UAAACAACAAUUACCUUUCUU................... len:21 al:2
........................................................AAACAACAAUUACCUUUCUaUU................. len:22 al:4
........................................................AAACAACAAUUACCUUUCU.................... len:19 al:2
........................................................AAACAACAAUUACCUUUCUUUc................. len:22 al:3
........................................................AAACAACAAUUACCUUUCUUUU................. len:22 al:8