Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1159:6653-6743 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_10060.ps.pdf
Locus Name: Cluster_10060
UAUAAUUAAUUCAUUGUAGUGAGGUAAUUGUUGUUUAAAACUAUUUGAAUUUUAAACGACGAUUACCUUUCUGCUGUGAAUGAAACACAGC
........((((((.((((.((((((((((((((((((((.........)))))))))))))))))))).)))).)))))).......... (-33.80)
..................cUGAGGUAAUUGUUGUUUAAAACU................................................. len:24 al:1
...................UGAGGUAAUUGUUGUUUAAAAuU................................................. len:23 al:1
...................UGAGGUAAUUGUUGUUUAAAA................................................... len:21 al:1
...................UGAGGUAAUUaUUGUUUAAAACU................................................. len:23 al:1
...................UGAGGUAAUUGUUGcUUAAAACU................................................. len:23 al:7
...................UGAGGUAAUUGUUGUcUAAAACU................................................. len:23 al:6
...................UGAGGUAAUUGUUGUUUAA..................................................... len:19 al:1
...................UGAGGUAAUUGUUGUUUAAAgCU................................................. len:23 al:14
...................UGAGGUAAUUGUUGUaUAAAACU................................................. len:23 al:2
...................UGAGGUAAUUGUUGUUUAAAACUAUU.............................................. len:26 al:3
...................UGAGGUAAUUGUUGUUUAgAACU................................................. len:23 al:4
...................UGAGGUAAUUGUUGUUUA...................................................... len:18 al:1
...................UGAGGUgAUUGUUGUUUAAAACU................................................. len:23 al:6
...................UGAGGUAAUUGUUGUUUAAAACc................................................. len:23 al:262
...................UGAaGUAAUUGUUGUUUAAAACU................................................. len:23 al:4
...................UGAGGUAAUUGUUGUUUAAAACUAUUUGA........................................... len:29 al:1
...................UGAGGUAAUUGUUaUUUAAAACU................................................. len:23 al:2
...................UGAGGUAAUUGUUGUUUAAAACUAUUUGAAU......................................... len:31 al:3
...................UGAGGUAAgUGUUGUUUAAAACU................................................. len:23 al:2
...................UGAGGUAAUUGUUGgUUAAAACU................................................. len:23 al:4
...................UGgGGUAAUUGUUGUUUAAAACU................................................. len:23 al:15
...................UGAGGUAAUUGUUGUUUAAAACg................................................. len:23 al:27
...................UGAGGUAAUUGUcGUUUAAAACU................................................. len:23 al:3
...................UGAGGUAAUUGUUGUUcAAAACU................................................. len:23 al:7
...................gGAGGUAAUUGUUGUUUAAAACU................................................. len:23 al:2
...................aGAGGUAAUUGUUGUUUAAAACU................................................. len:23 al:4
...................UGAGGUAAUUGUUGUUUAAgACU................................................. len:23 al:5
...................UGAGGUAAUUGUUGaUUAAAACU................................................. len:23 al:2
...................UGAGGUAAUUGUUGUUUAcAACU................................................. len:23 al:1
...................UGAGGUAAUUGUUGUUcA...................................................... len:18 al:1
...................UGAGGcAAUUGUUGUUUAAAACU................................................. len:23 al:5
...................UGuGGUAAUUGUUGUUUAAAACU................................................. len:23 al:3
...................UaAGGUAAUUGUUGUUUAAAACU................................................. len:23 al:2
...................UGAGGUAAUUGUUGUUUAAAcCU................................................. len:23 al:1
...................UGAGGUAAUcGUUGUUUAAAACU................................................. len:23 al:6
...................UGAGGUAAUUGUUGUUUgAAACU................................................. len:23 al:6
...................UGAGGUAAUUGUUGUUUAAAACU................................................. len:23 al:2958
...................UGAGGUAgUUGUUGUUUAAAACU................................................. len:23 al:4
...................UGAGGUAAUUGcUGUUUAAAACU................................................. len:23 al:11
...................cGAGGUAAUUGUUGUUUAAAACU................................................. len:23 al:21
...................UGAGGUAAUUGUUGUUUAAAACUAUUUGAA.......................................... len:30 al:2
...................UGAGGUAAUUGUUGUUUAAAACa................................................. len:23 al:14
...................UGAGGUAAUUGUUGUUUAAAAC.................................................. len:22 al:24
...................UGAGGUAAUUGUaGUUUAAAACU................................................. len:23 al:3
...................UGAGGUAAUUGUUGUUUAAAACUu................................................ len:24 al:2
...................aGAGGUAAUUGUUGUUUAAAAC.................................................. len:22 al:1
...................UGAGGUAAcUGUUGUUUAAAACU................................................. len:23 al:4
...................UGAGGUAAUUaUUGUUUAAAAC.................................................. len:22 al:1
...................UGAGGUgAUUGUUGUUUAAAAC.................................................. len:22 al:2
...................UGAGaUAAUUGUUGUUUAAAACU................................................. len:23 al:4
....................GAGGUAAUUGUUGUUUAAAACc................................................. len:22 al:4
....................GAGGUAAUUGUUGUUUAAAAC.................................................. len:21 al:1
....................GgGGUAAUUGUUGUUUAAAACU................................................. len:22 al:1
....................GAGGUAAUUGUUGUUUAAAAuU................................................. len:22 al:1
....................GAGGUAAUUGUUGUUUAAAACU................................................. len:22 al:62
....................GAGGUAAUUGUUGUUUAAAACUu................................................ len:23 al:1
....................GAGGUAgUUGUUGUUUAAAACU................................................. len:22 al:1
.....................................AAACUAUUUGAAUUUUAAAC.................................. len:20 al:2
.........................................UAUUUGAAUUUUAAACGACGAUUACCUUUCU................... len:31 al:1
..........................................AUUUGAAUUUUAAACGACaAUUACCUUUCU................... len:30 al:2
..........................................AUUUGAAUUUUAAACGACGAUUACCUUUCU................... len:30 al:1
...............................................AAUUUUAAACGACGAUUACCUUUCU................... len:25 al:1
.................................................UUUUAAACGgCGAUUACCUUU..................... len:21 al:11
.................................................UUUUAAACGACGAUUgCCUUU..................... len:21 al:3
.................................................UUUUAgACGACGAUUACCUU...................... len:20 al:3
.................................................UUUUAAACGACGAUUgCCUUUC.................... len:22 al:1
.................................................UUUUAAACGACGAUUACCUU...................... len:20 al:568
.................................................UUUUAAACGACGAUUAuCUUUCU................... len:23 al:1
.................................................UUcUAAACGACGAUUACCUUUCU................... len:23 al:1
.................................................UUUUAAACGACGgUUACCUUUCU................... len:23 al:2
.................................................UUUUAAACGACGAUUACCa....................... len:19 al:40
.................................................UcUUAAACGACGAUUACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUcACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUUACa........................ len:18 al:19
.................................................UUUUAgACGACGAUUACCUUUCU................... len:23 al:4
.................................................UUUUAAACGgCGAUUACCUU...................... len:20 al:3
.................................................UUUUAAAuGACGAUUACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUUACaUUUCU................... len:23 al:1
.................................................UUUUAAACGAuGAUUACCUUUCU................... len:23 al:1
.................................................cUUUAAACGACGAUUACCUU...................... len:20 al:1
.................................................UUUUAAACGACGAcUACCUUUCU................... len:23 al:9
.................................................UUUUAAACGACGAUU........................... len:15 al:10
.................................................UUUUAAACGACGAUcACCUUU..................... len:21 al:2
.................................................UcUUAAACGACGAUUACCUU...................... len:20 al:3
.................................................UUUUAAACGACGAUUACCUUUCUc.................. len:24 al:1
.................................................UUUUAAACGACGAUUACCUaU..................... len:21 al:7
.................................................UUUUAAACGACGAUUACCUUUCUGu................. len:25 al:25
.................................................UUUUAAACGACGAgUACCUUUCU................... len:23 al:1
.................................................UcUUAAACGACGAUUACCUUUC.................... len:22 al:2
.................................................UUUUAAACGACGAUUACCUUUaU................... len:23 al:22
.................................................UUUUAAgCGACGAUUACCUUUCU................... len:23 al:7
.................................................UcUUAAACGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACGAUUACCUc...................... len:20 al:47
.................................................UUUUAAACGACGAUUACCcUUC.................... len:22 al:10
.................................................UUUgAAACGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACaAUUACCUUU..................... len:21 al:333
.................................................UUUUAAACGACGAUUACCUcUCU................... len:23 al:3
.................................................UUUUAAACGACGAUUA.......................... len:16 al:1
.................................................UUUUAAACGACGAUUACCUgUCU................... len:23 al:1
.................................................UUUUAAACGACaAUUACCUU...................... len:20 al:71
.................................................UUcUAAACGACGAUUACCUUU..................... len:21 al:4
.................................................UUUUAAACGACGAUUACaU....................... len:19 al:2
.................................................UUUUAAACGACGAUUgCCU....................... len:19 al:4
.................................................UUUUAAACGACGAcUACCUUUC.................... len:22 al:5
.................................................UUUUAAACGACGAUUACCUUUu.................... len:22 al:43
.................................................UUUUAAACGACGAUcACCUUUCU................... len:23 al:9
.................................................UUUUAAACGACGAUUAC......................... len:17 al:2
.................................................UUUUAAuCGACGAUUACCUUUC.................... len:22 al:2
.................................................UUUUAAACGACGAcUACCU....................... len:19 al:1
.................................................UUUUgAACGACGAUUACCUUUCU................... len:23 al:1
.................................................UUUUAgACGACGAUUACCUUUC.................... len:22 al:2
.................................................UcUUAAACGACGAUUACCUUUCU................... len:23 al:8
.................................................aUUUAAACGACGAUUACCU....................... len:19 al:1
.................................................UUUUAAgCGACGAUUACCU....................... len:19 al:3
.................................................aUUUAAACGACGAUUACCUUUC.................... len:22 al:1
.................................................cUUUAAACGACGAUUACCUUUC.................... len:22 al:9
.................................................UUUUAAAgGACGAUUACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUUAuCUUUC.................... len:22 al:1
.................................................UUUUAAAuGACGAUUACCUUUCU................... len:23 al:1
.................................................UUUUAAACGACGuUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACGAUUACCUUcCU................... len:23 al:2
.................................................UUUcAAACGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACGAUUAu......................... len:17 al:1
.................................................UUUUAAACGACGAUUACCUUUCUG.................. len:24 al:2
.................................................aUUUAAACGACGAUUACCUUUCU................... len:23 al:1
.................................................UUUUAAACGACGgUUACCU....................... len:19 al:2
.................................................UUUUAAACuACGAUUACCU....................... len:19 al:2
.................................................UUUUAAACGACGAUUACuU....................... len:19 al:3
.................................................UUUUgAACGACGAUUACCUUU..................... len:21 al:1
.................................................cUUUAAACGACGAUUACCUUUCU................... len:23 al:13
.................................................UUUUAAACGACGAUUACCUUa..................... len:21 al:24
.................................................UUUUAAACGACGAUUAuCUU...................... len:20 al:3
.................................................UUUUAgACGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACaAUUACCU....................... len:19 al:44
.................................................UUUUAAgCGACGAUUACCUUUC.................... len:22 al:1
.................................................UUUUAAACGACGAcUACCUU...................... len:20 al:5
.................................................cUUUAAACGACGAUUACC........................ len:18 al:1
.................................................UUUUAAACGACGAUUACu........................ len:18 al:6
.................................................UUUUAAACGACGAUUACCUaUC.................... len:22 al:1
.................................................UUUUAAACGACGAUUACCUg...................... len:20 al:1
.................................................UUUUAAACGACGAaUACCUUUCU................... len:23 al:1
.................................................UUUUAAACGACaAUUACCUUUCU................... len:23 al:1243
.................................................UUUcAAACGACGAUUACCU....................... len:19 al:1
.................................................UUUUAcACGACGAUUACCUUUCU................... len:23 al:1
.................................................UUUUAAACGACGAUUACCUUUCg................... len:23 al:8
.................................................UUUUAAACGACGAUUACCUUUCUu.................. len:24 al:13
.................................................UUcUAAACGACGAUUACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUUACCUcUC.................... len:22 al:4
.................................................UUUUAAACGACGgUUACCUUUC.................... len:22 al:3
.................................................UUUUAAACGgCGAUUACCUUUC.................... len:22 al:24
.................................................UUUUAAACGACGAUcACCUU...................... len:20 al:2
.................................................UUUUAgACGACGAUUACCU....................... len:19 al:2
.................................................cUUUAAACGACGAUUACCUUU..................... len:21 al:4
.................................................UUUUAAACGACGAUUACCUUUCc................... len:23 al:224
.................................................UUUUAAACGACGAUUACCUUUgU................... len:23 al:2
.................................................UUUUAAACGACGAcUACC........................ len:18 al:1
.................................................UUUUAAACGAaGAUUACCUUUCU................... len:23 al:1
.................................................UUUUAAACGACGAUUACCg....................... len:19 al:2
.................................................UUUUAAcCGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACGAUUACCcUU..................... len:21 al:4
.................................................UUUUAAACGACGAUUACCUUc..................... len:21 al:44
.................................................UUUUgAACGACGAUUACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUUACCUUUuU................... len:23 al:3
.................................................UUUUAAACGACGAUUACuUUUC.................... len:22 al:2
.................................................UUUUAAACGACGAUUACCUUUCUa.................. len:24 al:1
.................................................UUUUgAACGACGAUUACCUU...................... len:20 al:1
.................................................UUUUAAACGACGAUUACaUU...................... len:20 al:5
.................................................UUUUAAAuGACGAUUACC........................ len:18 al:1
.................................................UUUUAAgCGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACGAUUACCU....................... len:19 al:894
.................................................UUUUAAACGACGAUUACCUUUC.................... len:22 al:1280
.................................................UUUUAAACGACGAUaACCUUUC.................... len:22 al:4
.................................................UUUUAAACGACGAUUAaCUUUC.................... len:22 al:1
.................................................UUUUAAACGcCGAUUACCUU...................... len:20 al:1
.................................................UaUUAAACGACGAUUACCUUUC.................... len:22 al:1
.................................................UUUUgAACGACGAUUACCUUUC.................... len:22 al:2
.................................................UUUUAAgCGACGAUUACCUU...................... len:20 al:3
.................................................UUUUAAACGACGAUUACCUUg..................... len:21 al:1
.................................................UUUUAAACGACGAUUACCUUUCU................... len:23 al:2060
.................................................UUUUAAACGACGAUUACCcUUCU................... len:23 al:5
.................................................UUUUAAACGACGAUUACCUUU..................... len:21 al:857
.................................................UUUUAAACGACGAUUACCUa...................... len:20 al:2
.................................................UUUUAgACGACGAUUACC........................ len:18 al:1
.................................................UUUUAAACGgCGAUUACCU....................... len:19 al:10
.................................................UUUUAAACGACGAUUACCgU...................... len:20 al:2
.................................................UUUUAAACGgCGAUUACCUUUCU................... len:23 al:33
.................................................UUUUAAACGACGAUUAuCU....................... len:19 al:2
.................................................cUUUAAACGACGAUUACCU....................... len:19 al:6
.................................................UUUUAAAaGACGAUUACCUUU..................... len:21 al:1
.................................................UUUUAAACGACGAUUACC........................ len:18 al:109
.................................................UUUUAAACGACGAUUACCc....................... len:19 al:112
.................................................UUUUAAACGACGAUUACCUUcC.................... len:22 al:5
.................................................UUUUAAACGACGAUUACCUUUCa................... len:23 al:144
.................................................UUUUAAACGuCGAUUACCUUUC.................... len:22 al:1
.................................................UUUUAAACGACaAUUACCUUUC.................... len:22 al:179
.................................................UUUUAAACGACGAUUACCUUUCUGC................. len:25 al:4
.................................................UUUUAAACGACaAUUACC........................ len:18 al:5
.................................................UUUUAAACGACGAUUAuCUUU..................... len:21 al:3
.................................................UUUUAAACGACGAUUACCUUaC.................... len:22 al:1
.................................................UUUUAAACGACuAUUACCU....................... len:19 al:1
.................................................UUUUAAACGACGAUUACCUUUa.................... len:22 al:25
..................................................UUUAAACGACGAUUACCUc...................... len:19 al:1
..................................................UUUAAACGACaAUUACCUU...................... len:19 al:2
..................................................UUUAAACGACGAUUACCa....................... len:18 al:1
..................................................UUUAAACGACGAUUACCUcUCU................... len:22 al:1
..................................................UUUAAACGACGAUUACCUUUCU................... len:22 al:39
..................................................UUUAAACGACGAUUACCUUU..................... len:20 al:23
..................................................UUUAAACGACGAUUACCUUUCc................... len:22 al:8
..................................................UaUAAACGACGAUUACCUUUCU................... len:22 al:1
..................................................UUUAAACGACGAUUACCUUa..................... len:20 al:1
..................................................UUUAAACGACGAUUACCUUUCa................... len:22 al:8
..................................................UUUAAACGACGAUUACCUUUCUu.................. len:23 al:1
..................................................UUUAAACGACaAUUACCUUU..................... len:20 al:2
..................................................UUUAAACGACGAUUACCUUUC.................... len:21 al:15
..................................................UUUAAACGACGAUUACCU....................... len:18 al:16
..................................................UUUAAACGACGAcUACCU....................... len:18 al:1
..................................................UUUAAACGACGAUUACCUU...................... len:19 al:22
..................................................UUUAAACGACGAUUACCUUUCUGu................. len:24 al:9
..................................................UUUuAACGACGAUUACCUUU..................... len:20 al:1
..................................................UUUAAACGACaAUUACCUUUCU................... len:22 al:19
..................................................UUUAAACGACGAUUACCc....................... len:18 al:1
..................................................UUUAAACGACGAUUACCUUUCUG.................. len:23 al:1
..................................................UUUAAACGACGAUUACCaU...................... len:19 al:1
...................................................UUAAACGACGAUUACCUc...................... len:18 al:2
...................................................UUAAACGACGAUUACCUUUCUGu................. len:23 al:6
...................................................UUAAACGACGAUUACCUU...................... len:18 al:10
...................................................UUAAACGACaAUUACCUUUCUG.................. len:22 al:1
...................................................UUAAACGgCGAUUACCUUUC.................... len:20 al:1
...................................................UUAAACGACGAUUACCUUUCc................... len:21 al:1
...................................................UUAAACGACaAUUACCUUUCU................... len:21 al:12
...................................................UUAAACGACGAUUACCUUUCUa.................. len:22 al:3
...................................................UUAAACGACGAUUACCUUU..................... len:19 al:1
...................................................UUAAACGACGAUUACCUUUCU................... len:21 al:6
...................................................UUAAACGACGAUUACC........................ len:16 al:1
...................................................UUAAACGACGAUUACCUUUCUGC................. len:23 al:1
...................................................UUAAACGACGAUUACCUUUC.................... len:20 al:15
...................................................UUAAACGACGAUUACCUUUCUGa................. len:23 al:1
....................................................UAAACGACGAUUACCUUU..................... len:18 al:1
.....................................................AAACGACGAUUACCUUUC.................... len:18 al:3
.....................................................AAACGACaAUUACCUUUCU................... len:19 al:1
.....................................................AAACGACGAUUACCUUUCU................... len:19 al:10
..........................................................ACGAUUACCUUUCUGCUGUGAAUGAA....... len:26 al:1