FastQCFastQC Report
Mon 10 Feb 2025
POR-82-TP2_R1.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenamePOR-82-TP2_R1.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences229727572
Total Bases22.3 Gbp
Sequences flagged as poor quality0
Sequence length15-141
%GC23

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGGCCATACACTCTTTCCCTAC5219490.22720346341361233No Hit
TCTGGGCCATAACACTCTTTCCCTAC2854710.12426501421431467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)