2024-12-20 20:33:04 : Started OrthoFinder version 2.5.5
Command Line: /work/pi_hputnam_uri_edu/pgrams/OrthoFinder/orthofinder -f ../data/20-Apul-Orthofinder/proteins/ -t 20 -o ../output/20-Apul-Orthofinder

WorkingDirectory_Base: ../output/20-Apul-Orthofinder/Results_Dec20/WorkingDirectory/

Species used: 
0: Apulchra-genome.pep.faa
1: Pocillopora_meandrina_HIv1.genes.pep.faa
2: Porites_evermanni_v1.annot.pep.fa

FN_Orthogroups: ../output/20-Apul-Orthofinder/Results_Dec20/WorkingDirectory/clusters_OrthoFinder_I1.5.txt_id_pairs.txt
WorkingDirectory_Trees: ../output/20-Apul-Orthofinder/Results_Dec20/WorkingDirectory/
2024-12-20 20:48:48 : OrthoFinder run completed