Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000009l:4940515-4940609 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_5981.ps.pdf
Locus Name: Cluster_5981
ACUGGUAAGCAGAAACAACCACGCUAACCUGCUUUCACUUCCAUUUAAUGCAAGUGAGAGAAGGUUAGUGUGGUUGUUUCUGUACAACUGAAAUU
...(((..((((((((((((((((((((((.(((((((((.(((...))).))))))))).))))))))))))))))))))))...)))...... (-50.90)
....................AuGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:2
....................AgGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUcUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUcCACUUCC..................................................... len:22 al:1
....................ACGCUAACCUGCUUUCACUUCCAU................................................... len:24 al:1
....................ACGCUAACCUGCUUUCACUUuC..................................................... len:22 al:1
....................ACGCUAACCUGCUUUCACUUCu..................................................... len:22 al:8
....................ACGCUAACCUGCUUUCACUU....................................................... len:20 al:1
....................ACGCUAACCUGCUUUCACUUCCu.................................................... len:23 al:5
....................ACGCUAACCUGCUUUCACUUCCAaU.................................................. len:25 al:1
....................ACGCUAACCUGCUUUCACUUCCAUU.................................................. len:25 al:1
....................ACGCUAACCUGCUUUCACUc....................................................... len:20 al:1
....................ACGCUAACCUGCUUUCACUUCC..................................................... len:22 al:15
....................AuGCUAACCUGCUUUCACUUC...................................................... len:21 al:1
....................ACGCUAACCUGCUUUCACUUCa..................................................... len:22 al:4
....................AuGCUAACCUGCUUUCACUUCC..................................................... len:22 al:2
....................gCGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:1
....................AuGCUAACCUGCUUUCACUUCCAUUU................................................. len:26 al:1
....................ACGCUAACCUGCUUUCACUUu...................................................... len:21 al:1
....................ACGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:36
....................ACGCUAACCUGCUUUCACUUC...................................................... len:21 al:5
.....................uGCUAACCUGCUUUCACUUCC..................................................... len:21 al:1
.....................CGCUAACCUGCUUUCACUUCa..................................................... len:21 al:1
......................GCUAACCUGCUUUCACUUCCA.................................................... len:21 al:1
......................GCUAACCUGCUUUCACUUCu..................................................... len:20 al:2
..........................................AUUUAAUGCAAGUGAGAGAAGGUUAGUGUGa...................... len:31 al:2
...........................................UUUAAUGCAAGUGAGAGAAGaUU............................. len:23 al:1
...........................................UUUAAUGCAAGUGAGAGAAGGUUAGUGUGa...................... len:30 al:1
.................................................cCAAGUGAGAGAAGGUUAGUGUGG...................... len:24 al:2
.................................................cCAAGUGAGAGAAGGUUAGUGU........................ len:22 al:1
.................................................aCAAGUGAGAGAAGGUUAGUGU........................ len:22 al:1
..................................................CAAGUGAGAGAAGaUUAGUGUGG...................... len:23 al:4
..................................................CAuGUGAGAGAAGGUUAGUGU........................ len:21 al:5
..................................................CAgGUGAGAGAAGGUUAGUGUGG...................... len:23 al:21
..................................................CAAGUGAGAGAAGGUUAGUa......................... len:20 al:8
..................................................CAAGUGAGAGAAGGUUAGUGUcG...................... len:23 al:5
..................................................CAgGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:2
..................................................CAAGUGAGAGAAGGUUAGUGU........................ len:21 al:1807
..................................................CAAGUGAGAaAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUaU........................ len:21 al:7
..................................................CAAGUGAGAGAAuGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:256
..................................................CcAGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:119
..................................................CAAGUGAGAGAAGGUUAGUGUaG...................... len:23 al:9
..................................................CAAGUGAGAuAAGGUUAGUGUGG...................... len:23 al:1
..................................................uAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:2
..................................................CAAGUGAGAGAAuGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUgGUGU........................ len:21 al:4
..................................................CuAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAgGGUUAGUGU........................ len:21 al:9
..................................................CAAGUGAGAGAAGGUUAGUGUGaUU.................... len:25 al:1
..................................................CAAGUGAGAGAAGGUUAGcGUGG...................... len:23 al:7
..................................................CAAGUGAGAGAgGGUUAGUGUGG...................... len:23 al:27
..................................................gAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGcGAGAGAAGGUUAGUGUGG...................... len:23 al:17
..................................................CAAGUGAGAGAAGGUUAGUGUa....................... len:22 al:45
..................................................gAAGUGAGAGAAGGUUAGU.......................... len:19 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGg..................... len:24 al:8
..................................................CAAGUGAGAGAAGGUcAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGuUUAGUGU........................ len:21 al:2
..................................................CAAGUGgGAGAAGGUUAGUGU........................ len:21 al:14
..................................................CAAGUGAGuGAAGGUUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAGg.......................... len:19 al:1
..................................................CAAGUGAGAGAAGGUUgG........................... len:18 al:1
..................................................CAAGUGAGAGAAGGUUAaUGUGGU..................... len:24 al:1
..................................................uAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUa................... len:26 al:3
..................................................CAAGUGAGAGAAGGUUAa........................... len:18 al:1
..................................................CcAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGUc.................... len:25 al:5
..................................................CAAGUGAGAGuAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGu...................... len:23 al:521
..................................................CAAGUGAGAGAAGGUUAu........................... len:18 al:1
..................................................CAAGUGuGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGa..................... len:24 al:37
..................................................CAAGUGAGAGAAGGUUgGUGUG....................... len:22 al:1
..................................................uAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:28
..................................................CAAGUaAGAGAAGGUUAGUGU........................ len:21 al:3
..................................................CAAGUGAGAGgAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUUAGgGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAG........................... len:18 al:11
..................................................CAAGUGAGAGAAGGUUgGUGUGG...................... len:23 al:15
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUG................... len:26 al:2
..................................................CAAGUGAGAGAAGGUUAGcGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUuGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGc..................... len:24 al:70
..................................................CAAGUGAGgGAAGGUUAGUGUGG...................... len:23 al:13
..................................................CuAGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGgGAAGGUUAGUGUG....................... len:22 al:2
..................................................gAAGUGAGAGAAGGUUAGUGU........................ len:21 al:11
..................................................CgAGUGAGAGAAGGUUAGUGU........................ len:21 al:9
..................................................CAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:5129
..................................................CAAGUGAGAGAAGGUUAGU.......................... len:19 al:54
..................................................CAAGUGAGAGAAGGUUAGUuU........................ len:21 al:2
..................................................CAAGUGAGAGAgGGUUAGUGUG....................... len:22 al:3
..................................................uAAGUGAGAGAAGGUUAGUGUGGUUG................... len:26 al:1
..................................................CAAGUGAGAGAgGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUcAGUGU........................ len:21 al:5
..................................................CAAGUGAGAGAAGGUUAGUGUc....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGUGgGG...................... len:23 al:11
..................................................CAAGUcAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGgGAGAAGGUUAGUGUGGU..................... len:24 al:3
..................................................CAAGUGAGAGAAGGUUAGcGUGGU..................... len:24 al:3
..................................................CAuGUGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUuUGG...................... len:23 al:1
..................................................CAAaUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUGa........................ len:21 al:99
..................................................gAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:33
..................................................CAAGUGAGAGAAGGUUAGUG......................... len:20 al:59
..................................................CAAGUGgGAGAAGGUUAGUGUGG...................... len:23 al:30
..................................................CAAGUGAaAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAuGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGcUAGUGU........................ len:21 al:5
..................................................CAAGUGAGAGAAGGUUAGUcU........................ len:21 al:9
..................................................CAAGUGAGAGgAGGUUAGUGU........................ len:21 al:5
..................................................CAAGUGAGAGAAGGUcAGUGUGG...................... len:23 al:10
..................................................CAAGUGAGAGAAGGcUAGUGUGGUU.................... len:25 al:1
..................................................CAAGUGAGgGAAGGUUAGUG......................... len:20 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGUU.................... len:25 al:23
..................................................CAcGUGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUaAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGuUU.................... len:25 al:5
..................................................CAAGUGAGAGAAGGUUAGUGUGcU..................... len:24 al:6
..................................................CAAGUGAGAGAAGGUUAGUGUGGcU.................... len:25 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGUa.................... len:25 al:8
..................................................CAAGUGAGAGAAGGUUAGa.......................... len:19 al:1
..................................................CAAGUGuGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGgGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGc.......................... len:19 al:7
..................................................gAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGcGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUu................... len:26 al:15
..................................................CAAGUGcGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGgGAAGGUUAGUGU........................ len:21 al:8
..................................................CAAGUGAGAGAAGaUUAGUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGg........................ len:21 al:46
..................................................CAAGUGAGAGAAGGUUAGUGUGuU..................... len:24 al:29
..................................................CAAGUGAGAGAAGGUcAGUGUG....................... len:22 al:1
..................................................CAgGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGcUAGUGUGG...................... len:23 al:9
..................................................CgAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:21
..................................................CAAGUGAGAGAAGGUUAGUGc........................ len:21 al:360
..................................................CAAGUGAGAGAAGGUUAGaGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGc...................... len:23 al:159
..................................................CAAGUGAGAGAAGGgUAGUGU........................ len:21 al:1
..................................................uAAGUGAGAGAAGGUUAGUGU........................ len:21 al:7
..................................................CAAGUGAGAGgAGGUUAGUGUGG...................... len:23 al:30
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUc................... len:26 al:1
..................................................CAAGUGAGAGAAGGUUAGUGaGG...................... len:23 al:4
..................................................CAAuUGAGAGAAGGUUAGUGUGG...................... len:23 al:2
..................................................CAcGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGcGAGAGAAGGUUAGUGU........................ len:21 al:9
..................................................CAAGUGAGAGAAGGUUAGUGUGa...................... len:23 al:1775
..................................................CAAGUGAGAGAAaGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUaUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUGcG....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGaGUGG...................... len:23 al:4
..................................................CAAGUGAGAGAAGuUUAGUGUGG...................... len:23 al:4
..................................................CAAuUGAGAGAAGGUUAGUGU........................ len:21 al:2
..................................................CAAGgGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUu....................... len:22 al:4
..................................................CAAGUGAGAGAAGGUUAGUGcGG...................... len:23 al:20
..................................................CAAGUGAGAGAAGcUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGuGAAGGUUAGUGU........................ len:21 al:1
..................................................CAgGUGAGAGAAGGUUAGUGU........................ len:21 al:8
..................................................CAAGUGAGAGAAGGUUAuUGUGG...................... len:23 al:2
...................................................AAGUGAGAGAAGGUUAGUGUGGU..................... len:23 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGGUc.................... len:24 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGGaU.................... len:24 al:1
...................................................AAGUGAGAGAAGGUUAGUGUG....................... len:21 al:2
...................................................gAGUGAGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................uAGUGAGAGAAGGUUAGUGUGGUU.................... len:24 al:1
...................................................AAGUGAGAGAAGGUUAGUGU........................ len:20 al:12
...................................................AAGUGAGAGAAGGUUAGUGUGuUU.................... len:24 al:1
...................................................AAGUGAGAGAAGGUUAGUGc........................ len:20 al:5
...................................................AAGUGAGAGAAGGUUAGUGUGG...................... len:22 al:41
...................................................AAGUGAGAGAAGGUUAGUGUGGa..................... len:23 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGc...................... len:22 al:5
...................................................AAGUGAGAGAAGGUUAGUGUGu...................... len:22 al:2
...................................................AAGUGAGAGAAGGUUAGUGUGa...................... len:22 al:14
....................................................AGUGAGAGAAGGUUAGUG......................... len:18 al:2
....................................................AGUGAGAGAAGGUUAGUGa........................ len:19 al:1
....................................................gGUGAGAGAAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAgGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGUc.................... len:23 al:2
....................................................AGUGAGAGAAGGUUAGUcU........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUGu...................... len:21 al:3
....................................................AGUGAGAGAAGGUUAGUGUGGa..................... len:22 al:1
....................................................AGUGgGAGAAGGUUAGUGUG....................... len:20 al:1
....................................................AGUGAGAGAAGGUUAGUGUGa...................... len:21 al:23
....................................................AGUGAGAGAAGGUUAGUGg........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGU..................... len:22 al:2
....................................................AGUGAGAGAAGGUUAGUGUcG...................... len:21 al:1
....................................................AGUGAGAGgAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUaU........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGUUaU.................. len:25 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGUU.................... len:23 al:2
....................................................AGUGAGAGAAGGUUAGUGUGG...................... len:21 al:49
....................................................AGUGAGAGAAGGUUAGUGUGuU..................... len:22 al:1
....................................................AGUGAGAGAAGGUUAGUGU........................ len:19 al:20
.....................................................GUGAGAGAAGGUUAGUGU........................ len:18 al:1
.....................................................GUGAGAGAAGGUUAGUGUGa...................... len:20 al:1
.....................................................GUGAGAGAAGGUUAGUGUGu...................... len:20 al:2
.....................................................GUGAGAGAAGGUUAGUGUGG...................... len:20 al:4
......................................................UGAGAGAAGGUUAGUGUGGc..................... len:20 al:1
......................................................UGAGAGAAGGUUAGUGUGG...................... len:19 al:2
......................................................UGAGAGAAGGUUAGUGUGuU..................... len:20 al:2
......................................................UGAGAGAAGGUUAGUGUGGUU.................... len:21 al:4
.......................................................GAGAGAAGGUUAGUGUGG...................... len:18 al:1