Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000009l:616285-616377 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_5899.ps.pdf
Locus Name: Cluster_5899
UGAAAACUGACAAUAGUUACAUUUCACUAGAUGAGCGCUAACUGUUAUUGUUCUGCAUUAUCGGUGAAAUUGUAACUGUUGUCUCCUGUUGUU
........((((((((((((((((((((.((((((((..(((.......))).))).)))))))))))).))))))))))))).......... (-31.90)
....................AUUUCACUAGAUGAGCGCUAAa................................................... len:22 al:10
....................AUUUCACUAGAUGAGCGCg...................................................... len:19 al:1
....................AUcUCACUAGAUGAGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGgGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAcGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUGAGuGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUAgC................................................... len:22 al:10
....................AUUUCcCUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:1178
....................AUUUCACUAGAUGAGCGCUu..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCGCgA..................................................... len:20 al:2
....................AUUUCgCUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCAgUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGgUGAGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGAGCGCUAA.................................................... len:21 al:20
....................AUUcCACUAGAUGAGCGCUAAC................................................... len:22 al:8
....................AUUUCACUAGAUGAGgGCU...................................................... len:19 al:1
....................AUUUCACUAGAUGAGCGCUgA.................................................... len:21 al:2
....................AUUUuACUAGAUGAGCGCUAAC................................................... len:22 al:4
....................cUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCAuUAGAUGAGCGCUAAC................................................... len:22 al:1
....................gUUUCACUAGAUGAGCGCU...................................................... len:19 al:2
....................AUUUCACUAGAUGAGCGuUAAC................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCUAc.................................................... len:21 al:1
....................gUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:18
....................AUUUCACUAGAUGAGCGCUAACUu................................................. len:24 al:1
....................AUUUCACUAGAUGAaCGCUAAC................................................... len:22 al:2
....................AUaUCACUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCaCU...................................................... len:19 al:2
....................AUUUCACUAGAUGgGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGcGCGCUAAC................................................... len:22 al:1
....................AUUUCACaAGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUAACc.................................................. len:23 al:31
....................AUUUCACUAGAUGAGCGCUAcC................................................... len:22 al:2
....................gUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACcAGAUGAGCGCUAAC................................................... len:22 al:5
....................AUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:176
....................AUUUCACUAGAUGAGCGCUAu.................................................... len:21 al:1
....................AUUUCACUAGAUGAGCGCUAgCU.................................................. len:23 al:2
....................AUUUCACUuGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCc...................................................... len:19 al:13
....................AcUUCACUAGAUGAGCGCUAAC................................................... len:22 al:6
....................AUUUCACUAGAUGAGCGCUAACUuU................................................ len:25 al:2
....................AUUUCACUAGAUGAGCGCUA..................................................... len:20 al:85
....................AUUUCACUAGAUGAGCGCU...................................................... len:19 al:51
....................AUUUCACUAGAUGAGCGCa...................................................... len:19 al:4
....................AUUcCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUcCACUAGAUGAGCGCU...................................................... len:19 al:2
....................AUUUuACUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUg..................................................... len:20 al:2
....................uUUUCACUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCGCUcAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCgAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUgAC................................................... len:22 al:5
....................AUUUCACUAGAUGAGCGCUAACa.................................................. len:23 al:148
....................uUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................uUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:7
....................AUUUCACUgGAUGAGCGCUAAC................................................... len:22 al:7
....................AUUUCACUAGAcGAGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGAGCGCcAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUAACg.................................................. len:23 al:7
....................AUUUCACUAGAUGAGCGCUAAu................................................... len:22 al:97
....................AUUUCACUAGAUGgGCGCUAA.................................................... len:21 al:2
....................AUUUCACUAGAUGAGCGCcA..................................................... len:20 al:9
....................AUUUCACUAGAUGAGCGCUAAuU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUAACUG................................................. len:24 al:1
.....................UUUCACUAGAUGAGCGCUAACa.................................................. len:22 al:3
.....................UUUCACUAGAUGAGCGCUAAC................................................... len:21 al:4
.....................UUUCACUAGAUGAGCGCU...................................................... len:18 al:2
.....................UUUCACUAGAUGAGCGCUAACU.................................................. len:22 al:1
......................UUCACUAGAUGAGCGCUAACa.................................................. len:21 al:1
......................UUCACUAGAUGAGCGCUAACU.................................................. len:21 al:1
......................UUCACUAGAUGAGCGCUAACUGUUAUUGUUa........................................ len:31 al:1
......................UUCACUAGAUGAGCGCUA..................................................... len:18 al:1
......................UUCACUAGAUGAGCGCUAAu................................................... len:20 al:1
......................UUCACUAGAUGAGCGCUAACUGUUAUUGUU......................................... len:30 al:1
.......................UCACUAGAUGAGCGCUAAC................................................... len:19 al:1
..........................................UGUUAUUGUUCUGCAUUAUCGGUGAAAUUGU.................... len:31 al:1
...................................................UCUGCAUUAUCGGUGAAAUUGUc................... len:23 al:1
...................................................UCUGCAUUAUCGaUGAAAUUGU.................... len:22 al:1
...................................................UCUGCAUUAUCGGUGAAAUUGc.................... len:22 al:10
...................................................UCUGCAUUAUCGGUGAAAUc...................... len:20 al:2
...................................................UCUGCAUUAUCGGUGAAAUUGU.................... len:22 al:55