Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000007l:3377283-3377376 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_4254.ps.pdf
Locus Name: Cluster_4254
UACAGCAAGGGUUGGAGGUUACCAGACCCCUGCAAUCAAAGAACUUUUUGUCUUUGAUUGCUGUGAUCUGGUUAUCUCGACUUCUUAACAACGA
......(((((.(.(((((.((((((.(.(.(((((((((((........))))))))))).).).)))))).))))).).)))))........ (-33.50)
....................ACCAGACCCCUGCAAUCAAgGA.................................................... len:22 al:1
....................ACCgGACCCCUGCAAUCAA....................................................... len:19 al:2
....................ACCgGACCCCUGCAAUCAAAGA.................................................... len:22 al:7
....................ACCAGACCCCUGCAAUCAAAGA.................................................... len:22 al:1
....................ACCAGACCCCUGCAAUCAA....................................................... len:19 al:2
......................CgGACCCCUGCAAUCAAAGA.................................................... len:20 al:2
....................................................UUUGAUUGCUGUGAUCUGGU...................... len:20 al:10
....................................................UUUGAUUGCUGUGAUCUGGUc..................... len:21 al:4
....................................................UUUGAUUGCUGUGAUCUGGUUAU................... len:23 al:43
....................................................UUUGAUUGCUGUGAUCUGGUUA.................... len:22 al:143
....................................................UUUGAUUGCUGUGAUCUGGUUAUa.................. len:24 al:2
....................................................UUUGAcUGCUGUGAUCUGGUUA.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUa........................ len:18 al:1
....................................................cUUGAUUGCUGUGAUCUGGUU..................... len:21 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUAUu.................. len:24 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUAc................... len:23 al:7
....................................................UUUGAUUGCUGUGAUCcGG....................... len:19 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUAa................... len:23 al:3
....................................................UUUGAUUGCUGUGAUCUGaUU..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGUa..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUuU................... len:23 al:2
....................................................UUUGAUUGCUGUGgUCUGGUUA.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUgA.................... len:22 al:2
....................................................cUUGAUUGCUGUGAUCUGGUUA.................... len:22 al:1
....................................................UUUGAUUGCcGUGAUCUGGUUA.................... len:22 al:2
....................................................UUUGAUUGCUGUGAUCUGGcU..................... len:21 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUgU................... len:23 al:3
....................................................UUUGAUUGCUGUGAUCUGGUUu.................... len:22 al:6
....................................................UUUGAUUGCUGUGAUCUGGUcA.................... len:22 al:1
....................................................UUUGAUUGCUGUGgUCUGGU...................... len:20 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUg.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUU..................... len:21 al:68
....................................................UUUGAUUGCUGUGAUCUGGc...................... len:20 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUAg................... len:23 al:1
.....................................................UUGAUUGCUGUGAUCUGGUUA.................... len:21 al:1
.......................................................GAUUGCUGUGAUCUGGUUAU................... len:20 al:1
........................................................AUUGCUGUGAUCUGGUUAc................... len:19 al:1