Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000004l:1859862-1859953 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_3437.ps.pdf
Locus Name: Cluster_3437
CUGUUUACGGUUUAACUGGGUAGCAUAACAUUGUAAGAGAUCUUUAAAGGUCUCUUACAUUGUUGUGCUGCCUGGAAAAACUGAACUGACUG
..(((..((((((..(((((((((((((((.((((((((((((....)))))))))))).)))))))))))))))..))))))....))).. (-46.60)
....................UAGCAUAACAUUGUAAGAGAUCcU................................................ len:24 al:13
....................UAGCAUAACAUUGUAAGAGAUCUUUAAAGu.......................................... len:30 al:1
....................UAGCAUAACAUUGUAAGg...................................................... len:18 al:1
....................UAGCAUAACAUUGcAAGAGAUCU................................................. len:23 al:12
....................UAGCAUAACAUUGUAAGgGAUCU................................................. len:23 al:29
....................UuGCAUAACAUUGUAAG....................................................... len:17 al:1
....................cAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:24
....................aAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAUCUaU............................................... len:25 al:22
....................UAGCAUAACAUUGUAAGAuAUCU................................................. len:23 al:1
....................UAGCAUAACAUUaUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACgUUGUAAGAGAUCU................................................. len:23 al:13
....................UAGCAUAACAUUGUAAGAGu.................................................... len:20 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUg.............................................. len:26 al:1
....................UAGCAUAACAUUGUAAGAGgUCUU................................................ len:24 al:3
....................UAGCAUAACAUUGUAAGAGAUCUUU............................................... len:25 al:143
....................UAGCAUAACAUUGUAAGAGAaCU................................................. len:23 al:4
....................UAGCAUAACAUUGUAAGgGAUCUU................................................ len:24 al:1
....................UuGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:10
....................gAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGA...................................................... len:18 al:4
....................UAGCAcAACAUUGUAAGAGAUCU................................................. len:23 al:14
....................UAGCAUAACAUUGUAAGAGAU................................................... len:21 al:7
....................UAGCAUAACAUUGUAAGAGAcCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGUAAGAGAUCc................................................. len:23 al:846
....................UAGCAUAACAUUGUAAGAGgUCU................................................. len:23 al:30
....................UAGCAUAACAUUGUAAGAGAUCa................................................. len:23 al:630
....................UAGCAUAACuUUGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUuUU................................................ len:24 al:1
....................UAGCAUAAaAUUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUgAGAGAUCU................................................. len:23 al:15
....................UAGCAUAACAUUGUAAGAGAUaU................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGAgCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAUuU................................................. len:23 al:6
....................UAGCgUAACAUUGUAAGAGAUCUUU............................................... len:25 al:1
....................UAGaAUAACAUUGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAa....................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUa................................................ len:24 al:17
....................UAGCAUAACAUcGUAAG....................................................... len:17 al:2
....................UAGCAUAgCAUUGUAAGAGAUCU................................................. len:23 al:54
....................UAGCAUAgCAUUGUAAG....................................................... len:17 al:5
....................UAGCAUAACAUUGUAcGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAuGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUAAAGG.......................................... len:30 al:2
....................UAuCAUAACAUUGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGA.................................................... len:20 al:3
....................UAGCAUAACgUUGUAAGAGAUCUUUAAA............................................ len:28 al:1
....................UAGCAUAACAUUGUAAGAGAUa.................................................. len:22 al:6
....................UAGCAUAACAUUGUAAGAGAUCUc................................................ len:24 al:37
....................UAGCAUAACAUUGUAAGAGAUCUUUuA............................................. len:27 al:6
....................cAGCAUAACAUUGUAAG....................................................... len:17 al:6
....................UgGCAUAACAUUGUAAGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGaAAGAGAUCU................................................. len:23 al:1
....................UAaCAUAACAUUGUAAGAGAUCU................................................. len:23 al:4
....................UAGCAUAACAUcGUAAGAGAUCU................................................. len:23 al:19
....................UgGCAUAACAUUGUAAG....................................................... len:17 al:2
....................UAGCAUAACAUUGUAAGAGAUCUg................................................ len:24 al:3
....................UAGCAUAACAUUGUAuGAGAUCU................................................. len:23 al:3
....................UAGCAUAACAUUGUAAGAGAUCUUaA.............................................. len:26 al:2
....................UAGCAUAgCAUUGUAAGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAgCAUUGUAAGAGAUCUU................................................ len:24 al:2
....................UAGCAUAACAUUGUAAGAGAgC.................................................. len:22 al:1
....................UAGCAUAACAUUGUuAGAGAUCU................................................. len:23 al:1
....................cAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAaAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUgAGAGAUCUUU............................................... len:25 al:2
....................UAGCAUAACAUUGUAAGAGAUCUUUA.............................................. len:26 al:5
....................UAGuAUAACAUUGUAAGAGAUCU................................................. len:23 al:10
....................UAGCAUAACAUUGUAAGAGAUCUcU............................................... len:25 al:4
....................UAGCAUAACAcUGUAAG....................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGg.................................................... len:20 al:1
....................UAGCAUAACAUUGUAAGAGAUCUaUA.............................................. len:26 al:1
....................UAaCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUAuA............................................ len:28 al:2
....................UAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:338
....................UAGCAUAACAUUGUAcG....................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUc.............................................. len:26 al:2
....................UAGCAUAAuAUUGUAAGAGAUCU................................................. len:23 al:4
....................UAGCAUAACAUcGUAAGAGAUCUU................................................ len:24 al:3
....................UAGCAUAACAUUGUAAGAGAcCU................................................. len:23 al:61
....................UAGCAUAACAUUGUAAGuGAUCU................................................. len:23 al:2
....................UAGCAUAACAgUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGAgCU................................................. len:23 al:8
....................UAGCAUAACAUUGUAAGAGAUu.................................................. len:22 al:14
....................gAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:17
....................UAGCAUAACAUUGUAAGAGAUCUUUAu............................................. len:27 al:1
....................UAGCAgAACAUUGUAAGA...................................................... len:18 al:6
....................UAGCAUAACAUUGUAAGAGAcCUU................................................ len:24 al:1
....................UcGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:7
....................aAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:8
....................UAGCAUAACAUUGUAgG....................................................... len:17 al:2
....................UAGCAUAACAUUGUAAGAGAUCUUg............................................... len:25 al:3
....................UAGCAUAACAUUGUcAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUCaU................................................ len:24 al:1
....................UAGCAUAuCAUUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUuACAUUGUAAG....................................................... len:17 al:1
....................UAGCAUgACAUUGUAAGAGAUCU................................................. len:23 al:8
....................UAGCAUAACAUUGUAgGAGAUCU................................................. len:23 al:18
....................UAGCAUAACgUUGUAAGAGAUCUUU............................................... len:25 al:2
....................UAGCgUAACAUUGUAAGAGAUCU................................................. len:23 al:18
....................UAGCAUAACAUUGUAAGgGAUCUUU............................................... len:25 al:1
....................UAGCAaAACAUUGUAAGAGAUCU................................................. len:23 al:3
....................UAGCAUAACcUUGUAAGAGAUCU................................................. len:23 al:1
....................UgGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:23
....................UAGCAUAACAUUGUAAGAGAc................................................... len:21 al:2
....................UAGCAUAACAUUGUAAGAGAUCUUa............................................... len:25 al:9
....................UAGCAUAACAUUGUAAGAaAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUc............................................... len:25 al:22
....................UAGCAUAACAUUGUAAG....................................................... len:17 al:380
....................UuGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAcUGUAAGAGAUCU................................................. len:23 al:8
....................UgGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:3
....................UAGCuUAACAUUGUAAGAGAUCU................................................. len:23 al:3
....................UAGCAUAACAUUGUAAGAGAUCUUUu.............................................. len:26 al:31
....................UAGCAUAACAUgGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:5104
....................UAGCAUAACAUUGcAAGAGAUCUU................................................ len:24 al:1
....................gAGCAUAACAUUGUAAG....................................................... len:17 al:3
....................UAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:2
....................UAGCAUAACAUUGUAAGAGuUCU................................................. len:23 al:3
....................UAGCAUAACAUUGUAAGAGcUCU................................................. len:23 al:2
.....................AGCAUAACAUUGUAAGAGAUuU................................................. len:22 al:1
.....................AGCAUAACAUUGUAAGAGAUCU................................................. len:22 al:8
.....................AGCAUAACAUUGUAAGAGAUCa................................................. len:22 al:3
......................GCAUAACAUUGUAAGAGAUCc................................................. len:21 al:1
......................GCAUAACAUUGUAAGAGAUCU................................................. len:21 al:1
......................GCAUAACAUcGUAAGAGAUCU................................................. len:21 al:1
.......................CAUAACAUUGUAAGAGAUCU................................................. len:20 al:2
........................AUAACAUUGUAAGAGAUCU................................................. len:19 al:5
........................AUAACAUUGUAAGAGAUCc................................................. len:19 al:1
........................AUAgCAUUGUAAGAGAUCU................................................. len:19 al:1
..........................................UUUAAAGGUCUCUUACAUUGUUGUGCUGCu.................... len:30 al:2
..........................................UUUAAAGGUCUCUUACAUUGUUGUGCUGCa.................... len:30 al:1
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCC.................... len:29 al:6
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCCa................... len:30 al:1
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCa.................... len:29 al:2
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCu.................... len:29 al:2
.................................................GUCUCcUACAUUGUUGUGCUGCC.................... len:23 al:3
.................................................GUCUCUUACAUcGUUGUGCUGCC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCUGCCg................... len:24 al:7
.................................................GUCUCUUACAUUGUUGUGCUGCa.................... len:23 al:142
.................................................GUCUCUUACAUUGUUGUGCc....................... len:20 al:1
.................................................GUCUCUUACAUUGUUGUGuUGCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUcGUGCUGCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUUGUGCUGg..................... len:22 al:2
.................................................GUCUCUUACAUUGUUGUGCUGu..................... len:22 al:31
.................................................GUCUCUUACAUUGUUGUGCUGCCUa.................. len:25 al:2
.................................................aUCUCUUACAUUGUUGUGCUGCCU................... len:24 al:1
.................................................GUCUCUUACAUUGUUGUGCcGC..................... len:22 al:1
.................................................GUCUCUUACAUUGUUGUGCU....................... len:20 al:7
.................................................GUCUCUUACAUUGUUGUGCUGCCc................... len:24 al:12
.................................................GUCUCUUACAUUGUUGUGCUGCCa................... len:24 al:100
.................................................GUCUCUUACAUUGUUGUGCUGC..................... len:22 al:90
.................................................GUCUCUUACAUUGUUGUGCUGCg.................... len:23 al:12
.................................................GcCUCUUACAUUGUUGUGCUGCC.................... len:23 al:3
.................................................GUCUCUUACAUUGUUGUGCUcCCU................... len:24 al:1
.................................................aUCUCUUACAUUGUUGUGCUGC..................... len:22 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCCUc.................. len:25 al:1
.................................................GUCUCUUACAUUGUUGUGCUa...................... len:21 al:1
.................................................GUCUCUUACAUUGcUGUGCUGCC.................... len:23 al:3
.................................................GUCUCUUACAUUGUUGUGCg....................... len:20 al:1
.................................................GUCUCUUACgUUGUUGUGCUGCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUUGUGCUaCC.................... len:23 al:1
.................................................GUCcCUUACAUUGUUGUGCUGC..................... len:22 al:1
.................................................GUCUCUUACAUUGUUGUGCUG...................... len:21 al:19
.................................................GUCUCUUACAUUGUUGUGCUGuC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCUGCCU................... len:24 al:43
.................................................GUCUCUUgCAUUGUUGUGCUGC..................... len:22 al:2
.................................................aUCUCUUACAUUGUUGUGCUGCC.................... len:23 al:2
.................................................aUCUCUUACAUUGUUGUGCUG...................... len:21 al:1
.................................................GUCUCUUACAUUGUUGUGCUGaC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCUGCCUu.................. len:25 al:11
.................................................GUCUCUUACAUUGUUGUGCUGCuU................... len:24 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCaU................... len:24 al:2
.................................................GUCUCUUACAUUGUUGUGCUGCC.................... len:23 al:281
.................................................GUCcCUUACAUUGUUGUGCUGCC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCUGCu.................... len:23 al:215
.................................................GUCUCUUACAUUGUUGUGCUGa..................... len:22 al:6
.................................................GUCUCUUACAUUGUUGUGCUuCCU................... len:24 al:1
.................................................GUCUCUUACAUUGUUGcGCUGCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUUGUGCaG...................... len:21 al:2
.................................................GUCUCUUACAUUGUUGUGC........................ len:19 al:1
..................................................UCUCUUACAUUGUUGUGCUu...................... len:20 al:2
..................................................UCUCUUACAUUGUUGUGCUGCC.................... len:22 al:397
..................................................UaUCUUACAUUGUUGUGCUGCC.................... len:22 al:2
..................................................UCUCUUACAUUGUUGUaCUGCC.................... len:22 al:1
..................................................UCcCUUACAUUGUUGUGCUGCCU................... len:23 al:2
..................................................UCUCUUACAUUGUUGUGCUGCu.................... len:22 al:297
..................................................UCUCUUACAUUGUUGUGCUa...................... len:20 al:6
..................................................UCUCUUACAUUGcUGUGCUGCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUGCa.................... len:22 al:200
..................................................UCUCUUACAUUGUUGUGCa....................... len:19 al:1
..................................................UCUCUUACAUUGUUGUGCUGCCUc.................. len:24 al:1
..................................................UCUCUUACAUUGUUGUGCUGCg.................... len:22 al:11
..................................................UCUCUUACAUUGUUaUGCUGCC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCcGCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUcCCU................... len:23 al:1
..................................................UCUCUUACAUUGUUGUGCUGCCa................... len:23 al:93
..................................................UCUCUUACAUUGUUGUGCUGC..................... len:21 al:35
..................................................UCUCUUACAUUGUUGUGCUaCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUGuC.................... len:22 al:1
..................................................UCcCUUACAUUGUUGUGCUGCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUGaC.................... len:22 al:3
..................................................UCUCUUACAUUGUUGUGCUGCCc................... len:23 al:6
..................................................UCUCUUACAUUGUUGUGgUGC..................... len:21 al:2
..................................................UCUCUUACAUcGUUGUGCUGCC.................... len:22 al:2
..................................................UCUCUUACAUUGUUGUGCUcC..................... len:21 al:2
..................................................UCUCUUACAUUGUUGUGCc....................... len:19 al:2
..................................................UCUCUUAuAUUGUUGUGCUGC..................... len:21 al:1
..................................................UCUCUUACAUUGUUGUGCUGa..................... len:21 al:5
..................................................UCUCUUACAUUGUUGUGCUGCCUu.................. len:24 al:5
..................................................UCUCUUACAUUGUUGUGCUGCCg................... len:23 al:8
..................................................gCUCUUACAUUGUUGUGCUGC..................... len:21 al:1
..................................................UCUCUUACAUUGUUGUGCUGCCU................... len:23 al:38
..................................................UCUCUUACAUUGUUGUGCgGC..................... len:21 al:1
..................................................UCUCUUAuAUUGUUGUGCUGCC.................... len:22 al:1
..................................................aCUCUUACAUUGUUGUGCUGCC.................... len:22 al:2
..................................................UCUCUUACAUUGUUGUGCU....................... len:19 al:5
..................................................UCUCUUAaAUUGUUGUGCUGCC.................... len:22 al:1
..................................................UCUCUUACgUUGUUGUGCUGCC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCUG...................... len:20 al:16
..................................................UCUCUUACAUUGUUGUGCUGu..................... len:21 al:16
..................................................UCUCUUACAUUGUUGUGCUGCuU................... len:23 al:1
..................................................UCUCUUACAUUGUcGUGCUGCC.................... len:22 al:4
...................................................CUCUUACAUUGUUGUGCUGu..................... len:20 al:2
....................................................UCUUACAUUGUUGUGCUGCCa................... len:21 al:1
.........................................................CAUUGUUGUGCUGCu.................... len:15 al:1