Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000002l:14046541-14046634 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_3367.ps.pdf
Locus Name: Cluster_3367
AGCAAAAUGAAUACAGAAUAGGAAUGUGAGAUACUGCCAUGCAUUUAGUGUCUGGCAGUAUGUUAUUUUUCCCAUUUGGUAUUCUAAUUUUCAU
........((((((.((((.((((.((((.(((((((((.((((...)))).))))))))).))))..)))).)))).)))))).......... (-33.80)
...................AGGAAUGUGAGAUACUGCCAUGC.................................................... len:23 al:3
....................GGAAUGUGAGAUACUGCCAUGCg................................................... len:23 al:2
....................GGAAUGUGAGAUACUGCCAUGC.................................................... len:22 al:17
....................GGAAcGUGAGAUACUGCCAUGC.................................................... len:22 al:1
....................GGAAUGUGAGAUACUGCCAUGa.................................................... len:22 al:2
....................GGAAUGUGAGAUAuUGCCAUGC.................................................... len:22 al:1
....................GGAAUGUGAGAUACUGCCAUGu.................................................... len:22 al:10
....................GGAAUGUGAGAUACUGCu........................................................ len:18 al:1
....................GGAAUGUGAGAUACUGCC........................................................ len:18 al:1
....................GGAAUGUGAGAUACUGCCAUGCA................................................... len:23 al:46
....................GGAAUGUGAGAUACUGCCAUGCu................................................... len:23 al:5
......................AAUGUGAGAUACUGCCAUGu.................................................... len:20 al:1
........................UGUGAGAUACUGCCAUGCA................................................... len:19 al:2
........................UGUGAGAUACUGCCAUGCAc.................................................. len:20 al:1
........................UGUGAGAUACUGCCAUGC.................................................... len:18 al:1
..........................................gUUUAGUGUCUGGCAGUAUGUUAUUUUU........................ len:28 al:1
..........................................AUUUAGUGUCUGGCAGUAUGUUAUUUUU........................ len:28 al:2
..........................................AUUUAGUGUCUGGCAGUAUGUUAUUUU......................... len:27 al:2
..........................................AUUUAGUGUCUGGCAGUAUGUUAUUUUUC....................... len:29 al:1
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCC..................... len:30 al:4
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCC...................... len:29 al:2
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCu..................... len:30 al:3
...........................................UUUgGUGUCUGGCAGUAUGUUAUUUUUCCC..................... len:30 al:1
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUaCCCA.................... len:31 al:3
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCCu.................... len:31 al:4
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCCc.................... len:31 al:4
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCCA.................... len:31 al:27
...........................................UUUAGUGUCaGGCAGUAUGUUAUUUUUCCCA.................... len:31 al:1
.............................................UAGUGUCUGGCAGUAUGUUAUUUUUCCCA.................... len:29 al:1
..............................................AGUGUCUGGCAGUAUGUUAUUUUUCCCA.................... len:28 al:1
..............................................AGUGUCUGGCAGUAUGUUAUUUU......................... len:23 al:1
..............................................AGUGUCUGGCAGUAUGUUAUUUUUCa...................... len:26 al:1
..............................................AGUGUCUGGCAGUAUGUUAU............................ len:20 al:1
...............................................GUGUCUGGCAGUAUGUUAUUUUUCCCA.................... len:27 al:1
.................................................cUCUGGCAGUAUGUUAUUUUUCCCAU................... len:26 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCu...................... len:22 al:105
..................................................UCUaGCAGUAUGUUAUUUUUC....................... len:21 al:2
..................................................UCUGGCAGcAUGUUAUUUUUCCCAU................... len:25 al:1
..................................................UCaGGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UuUGGCAGUAUGUUAUUUUUCC...................... len:22 al:4
..................................................UCUGuCAGUAUGUUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUaUC....................... len:21 al:2
..................................................aCUGGCAGUAUGUUAUUUU......................... len:19 al:1
..................................................UCUGGCAGUAUGUUAUUa.......................... len:18 al:1
..................................................UCcGGCAGUAUGUUAUUUUUC....................... len:21 al:6
..................................................UCUGGCAGUAUGUUAcUUUUCC...................... len:22 al:2
..................................................UCUGGCAGUAUGUUAUUUUUC....................... len:21 al:918
..................................................UCUGGCAGUAUGUUAUUUUUCCuA.................... len:24 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCCAc................... len:25 al:125
..................................................UCUGGCAGUAUGUUAUUUUUCCCc.................... len:24 al:75
..................................................UCUGGCAGUAUGUUAUUUUUCCCu.................... len:24 al:227
..................................................UCUGGCAGUAUGUUAcUUUUCCCAU................... len:25 al:4
..................................................UCUGGCAGaAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUcUUCC...................... len:22 al:2
..................................................UCUaGCAGUAUGUUAUUUUUCCC..................... len:23 al:5
..................................................UCUGGCAGUAUGUcAUUUUUC....................... len:21 al:4
..................................................cCUGGCAGUAUGUUAUUUUUCCC..................... len:23 al:4
..................................................UCUGGCAGUAcGUUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCuCA.................... len:24 al:1
..................................................UCUGGCAGcAUGUUAUUUUUC....................... len:21 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUUU................. len:27 al:4
..................................................UCUGGCAGcAUGUUAUUUUUCCCAUU.................. len:26 al:1
..................................................UCUGGCAGUAUGUUAUUUcUCC...................... len:22 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCCCuUU.................. len:26 al:8
..................................................UCcGGCAGUAUGUUAUUUU......................... len:19 al:1
..................................................UuUGGCAGUAUGUUAUUUUUCCC..................... len:23 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCCCuU................... len:25 al:42
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUc.................. len:26 al:19
..................................................UCUGGCAGUAUGUUAUUcUUCCCAUU.................. len:26 al:1
..................................................aCUGGCAGUAUGUUAUUUUUCC...................... len:22 al:3
..................................................UCgGGCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUAUGUUAUcUUUCCCA.................... len:24 al:1
..................................................cCUGGCAGUAUGUUAUUUUUCCCA.................... len:24 al:4
..................................................UgUGGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAa................... len:25 al:33
..................................................UCUGGCAGUAUGUUAUUUUcCC...................... len:22 al:7
..................................................UCUGGCAGUAUGUUAUU........................... len:17 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCCcU................... len:25 al:16
..................................................UCUGGCgGUAUGUUAUUUUUCC...................... len:22 al:5
..................................................UCUGGCAGUAUGUUAUUUUcCCC..................... len:23 al:12
..................................................UCUGGCAGUAcGUUAUUUUUCC...................... len:22 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCCCA.................... len:24 al:442
..................................................UCUGGCAGUAUGcUAUUUUUCCCAU................... len:25 al:1
..................................................UCUGGCAGUgUGUUAUUUUU........................ len:20 al:2
..................................................UCUGGCAGUAUGUUAUUUUcCCCAU................... len:25 al:4
..................................................UuUGGCAGUAUGUUAUUUUUC....................... len:21 al:7
..................................................UCUGGCAGUAUGUcAUUUUUCCCA.................... len:24 al:1
..................................................cCUGGCAGUAUGUUAUUUUU........................ len:20 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCa...................... len:22 al:64
..................................................UCUGGCAGUAUGUUAUcUUUCCCAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUa....................... len:21 al:8
..................................................UCUGGCAGUgUGUUAUUUUUCCCAU................... len:25 al:5
..................................................UCUGGCAGUAUGUUAUUUUU........................ len:20 al:194
..................................................UCUGGCAGUAUGUUAUUcUUC....................... len:21 al:3
..................................................cCUGGCAGUAUGUUAUUUUUCCCAU................... len:25 al:4
..................................................UCUGGCAGUAUGUUAUUUUa........................ len:20 al:1
..................................................UCaGGCAGUAUGUUAUUUUUCCCAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCuC..................... len:23 al:2
..................................................UCUGGCAGUAUGUUAUUUU......................... len:19 al:30
..................................................UCUGGCAGUAUGUUAaUUU......................... len:19 al:1
..................................................cCUGGCAGUAUGUUAUUUUUCC...................... len:22 al:3
..................................................UCUGGCAGUAUGUUAUUUc......................... len:19 al:4
..................................................UCUGGCAGUAUGUaAUUUUUCC...................... len:22 al:2
..................................................UCUGGCAGUAUGUUgUUUUU........................ len:20 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUU.................. len:26 al:55
..................................................UCaGGCAGUAUGUUAUUUUUCCC..................... len:23 al:1
..................................................UCcGGCAGUAUGUUAUUUUUCC...................... len:22 al:5
..................................................UCUGGuAGUAUGUUAUUUUU........................ len:20 al:1
..................................................UCUGGCAGUAUGUUAaUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUcAUUUUUCCCAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUUa................. len:27 al:2
..................................................UCUGGCAGUAUGUUAUcUUUCC...................... len:22 al:3
..................................................UCUGaCAGUAUGUUAUUUUUCCC..................... len:23 al:1
..................................................UCUGGCcGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUaCCCAU................... len:25 al:1
..................................................UCUGGCAGUAaGUUAUUUUUCCC..................... len:23 al:2
..................................................UCUGGCAGUAUGUUAUUcUUCCC..................... len:23 al:5
..................................................UCUGGCAGUAUGUcAUUUUU........................ len:20 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAaU.................. len:26 al:25
..................................................UCUGGCAGUAUGUUAUUUa......................... len:19 al:2
..................................................UCUGGCAGUAUGUUAUUUUcCCCA.................... len:24 al:6
..................................................UCUGGCAGUAUGUUAUUUUUuC...................... len:22 al:2
..................................................UCUGGCAGUAUGUUAUUUUUuCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAgU.................. len:26 al:1
..................................................UCUGGCAGcAUGUUAUUUUUCCC..................... len:23 al:3
..................................................UCUGGCAGUAUGUUAgUUUUCCC..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCgU................... len:25 al:10
..................................................UCUGGCAGUAUGUUAUUUcUC....................... len:21 al:2
..................................................UCUGGCAGUAUGUUAUUaUUCCCAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCgAU................... len:25 al:3
..................................................UCUGGCAGcAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCgCAU................... len:25 al:1
..................................................UCUGGCAGaAUGUUAUUUUUCCCAU................... len:25 al:1
..................................................UCUGGCAGUgUGUUAUUUUUCCC..................... len:23 al:4
..................................................UCUGGCAGUAgGUUAUUUUUC....................... len:21 al:2
..................................................UCUGGCAGUAUGUcAUUUUUCC...................... len:22 al:3
..................................................UCUuGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGcUAUUUUUCC...................... len:22 al:2
..................................................UCUGGCAGUAUGaUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUu....................... len:21 al:21
..................................................UCUGGCAGUAUGUUAUUUUUCCCAU................... len:25 al:598
..................................................UuUGGCAGUAUGUUAUUUUUCCCA.................... len:24 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCuCAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUcUCCCAU................... len:25 al:2
..................................................UCUGGCAGUAUGUUAcUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUc........................ len:20 al:18
..................................................UCUGGCAGUAUGcUAUUUUUC....................... len:21 al:6
..................................................aCUGGCAGUAUGUUAUUUUUC....................... len:21 al:3
..................................................UCUGGCAGUAUGUUAUUUUgC....................... len:21 al:2
..................................................UCUGGCgGUAUGUUAUUUUU........................ len:20 al:3
..................................................UCUGGCAGUAUGcUAUUUUUCCC..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAg................... len:25 al:11
..................................................UCUGGCAGUAUGUUAUUUUUaC...................... len:22 al:1
..................................................UCUGGuAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUAUGUUAUUU.......................... len:18 al:12
..................................................cCUGGCAGUAUGUUAUUU.......................... len:18 al:1
..................................................UCcGGCAGUAUGUUAUUUUU........................ len:20 al:2
..................................................UCUGGuAGUAUGUUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUgUGUUAUUUUUCC...................... len:22 al:2
..................................................UCaGGCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAcUU................. len:27 al:1
..................................................UCUGGCAGUAaGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUgUUUUUCC...................... len:22 al:5
..................................................UCUGGCAGUAUGUUAcUUUUCCC..................... len:23 al:3
..................................................UCUGGCAGUgUGUUAUUUUUC....................... len:21 al:3
..................................................UCUGGCAGUgUGUUAUUUUUCCCA.................... len:24 al:3
..................................................UCUGGCAGUAcGUUAUUUUUCCC..................... len:23 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCgC..................... len:23 al:1
..................................................UCcGGCAGUAUGUUAUUUUUCCC..................... len:23 al:4
..................................................UCUGGCAGUAUGUUAUUUUUCC...................... len:22 al:669
..................................................UCUGGCAGUAUGaUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGcAUGUUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUgU................. len:27 al:1
..................................................UCUGaCAGUAUGUUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUg.................. len:26 al:1
..................................................UCUGGCAGUAUGUUAgUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUcUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUuCC..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUcUUCCCAU................... len:25 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCu..................... len:23 al:350
..................................................UCUGGCAGUAUGUUAUUUUUaCCAU................... len:25 al:1
..................................................UCUGGgAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................aCUGGCAGUAUGUUAUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUUUG................ len:28 al:1
..................................................UCUGGCgGUAUGUUAUUUUUC....................... len:21 al:7
..................................................UCUGGCAGUAUGUUAUUUUUCCg..................... len:23 al:20
..................................................UCUGGCAGUAUGUUAUcUUUC....................... len:21 al:2
..................................................UCaGGCAGUAUGUUAUUUUUCCCA.................... len:24 al:3
..................................................UCUGGCAGUAUaUUAUUUUUCCC..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCC..................... len:23 al:1012
..................................................UaUGGCAGUAUGUUAUUUUUCCC..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCg.................... len:24 al:17
..................................................UCUGGCAGUAaGUUAUUUU......................... len:19 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUUc................. len:27 al:1
..................................................cCUGGCAGUAUGUUAUUUUUC....................... len:21 al:5
..................................................UCUGGCAGUAUGUUAUcUUUCCC..................... len:23 al:2
..................................................UCUGaCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUgUGUUAUUUUUCCCAUU.................. len:26 al:1
..................................................UCUGGCAGUAUGUUgUUUUUCCCA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUgUUUUUCCCAU................... len:25 al:4
..................................................UCUGGCgGUAUGUUAUUUUUCCCAU................... len:25 al:3
..................................................gCUGGCAGUAUGUUAUUUUUCCC..................... len:23 al:1
..................................................UCUGGCgGUAUGUUAUUUUUCCC..................... len:23 al:6
..................................................UCUGGCAGUAcGUUAUUUUUC....................... len:21 al:4
..................................................UCUGGgAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUcC....................... len:21 al:7
..................................................UCUGGCAGUAUGUUAUUUUUCCCAcU.................. len:26 al:5
..................................................UCUGGuAGUAUGUUAUUUUUC....................... len:21 al:5
..................................................aCUGGCAGUAUGUUAUUUUUCCCAU................... len:25 al:1
..................................................UCcGGCAGUAUGUUAUUUUUCCCA.................... len:24 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCCCAUa.................. len:26 al:11
..................................................UaUGGCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCg...................... len:22 al:2
..................................................UCUGGCAGUAUGUUuUUUUUCC...................... len:22 al:1
..................................................UCUuGCAGUAUGUUAUUUUUCC...................... len:22 al:1
...................................................CUGGCAGUAUGUUAUUUUUC....................... len:20 al:2
...................................................CUGGCAGUAUGUUAUUUUUCCCAU................... len:24 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCCA.................... len:23 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCC..................... len:22 al:2
....................................................UGGCAGUAUGUUAUUUUUC....................... len:19 al:1