Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000002l:14046235-14046328 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_3366.ps.pdf
Locus Name: Cluster_3366
AGCAAAGUGAAUACAGAAUAGGAAUGUAAGAUACUGCCAUGCAUUUAGUGUCUGGCAGUAUGUUAUUUUUCCAAUUUAGUAUUCAAAUUUUAAU
.......(((((((.((((.((((.((((.(((((((((.((((...)))).))))))))).))))..)))).)))).)))))))......... (-33.90)
AGCAAAGUGAAUACAGAAUA.......................................................................... len:20 al:1
.GCAAAGUGAAUACAGAAU........................................................................... len:18 al:1
.GCAAAGUGAAUACAGAAUA.......................................................................... len:19 al:2
............ACAGAAUAGGAAUGUAAGAU.............................................................. len:20 al:1
...................AGGAAUGUAAGAUACUGCCAUGCA................................................... len:24 al:2
...................AGGAAUGUAAGAUACUGCCAUGa.................................................... len:23 al:1
...................AGGAAUGUAAGAUACUGCCAUGC.................................................... len:23 al:1
...................AGGAAUGUAAGAUACUGCCAUGu.................................................... len:23 al:3
...................AGGAAUGUAAGgUACUGCCAUGC.................................................... len:23 al:1
....................GGAAUGUAAGAUACUGCCAUaCA................................................... len:23 al:1
....................GGAAUGUAAGAUACUGCCAUGCu................................................... len:23 al:11
....................GGAAUGUAAGAUACUGCa........................................................ len:18 al:2
....................GGAAUGUAAGAUACUGCCAUGCAUU................................................. len:25 al:2
....................GGAAUGUAAGAUACUGCCAcGCA................................................... len:23 al:1
....................GGAgUGUAAGAUACUGCCAUGCA................................................... len:23 al:1
....................GGAAUGUAAGAUACUGCCAUu..................................................... len:21 al:1
....................GGAAUGUAAGAUACUGCCAUGu.................................................... len:22 al:9
....................GGAAUGUAAGAUACUGCCAUG..................................................... len:21 al:1
....................GGAAUGUAAGAUACUGCCAUGCAUUUAGUGU........................................... len:31 al:1
....................GGAAUGUAAGAUgCUGCCAUGCA................................................... len:23 al:1
....................GGAAUGUAAGAUACUGCCAUGuA................................................... len:23 al:1
....................GGAAUGUAAGAUACUGCCAUGCAUa................................................. len:25 al:1
....................GGAAUGUAAGAUACUGCCAUcCA................................................... len:23 al:2
....................GGAAUGUAAGgUACUGCCAUGCA................................................... len:23 al:24
....................GGAAUGUAAGAUACUGCCAUGa.................................................... len:22 al:5
....................GGAAUGUAAGAUACUGCu........................................................ len:18 al:1
....................GGAAUGUAAGAUACUGCCAUGCg................................................... len:23 al:3
....................GGAAUGUAAGAUACUGCCAUGC.................................................... len:22 al:43
....................GGAAUGUAAGAUACUGCCAUGCA................................................... len:23 al:72
....................GGAAUGUAAGgUACUGCCAUGC.................................................... len:22 al:17
....................GaAAUGUAAGAUACUGCCAUGC.................................................... len:22 al:1
....................GGAAUGUAAGAUACUGCCgUGCA................................................... len:23 al:1
.....................GAAUGUAAGAUACUGCCAUGa.................................................... len:21 al:2
.....................GAAUGUAAGAUACUGCCAUGCA................................................... len:22 al:16
.....................GAAUGUAAGAUACUGCCAUGCu................................................... len:22 al:1
.....................GAAUGUAAGAUACUGCCAUGCg................................................... len:22 al:1
.....................GAAUGUAAGAUACUGCCAUGu.................................................... len:21 al:3
.....................GAAUGUAAGAUACUGCCAUGC.................................................... len:21 al:4
......................AAUGUAAGAUACUGCCAUGuA................................................... len:21 al:1
.......................AUGUAAGAUACUGCCAUGC.................................................... len:19 al:1
.......................AUGUAAGAUACUGCCAUGu.................................................... len:19 al:1
........................UGUAAGAUACUGCCAUGC.................................................... len:18 al:2
........................UGUAAGAUACUGCCAUGCAUU................................................. len:21 al:1
.........................................CAUUUAGUGUCUGGCAGUAUGUUAUUUUU........................ len:29 al:1
..........................................AUUUAGUGUCUGGCAGUAUGUUAUUUUU........................ len:28 al:1
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCA..................... len:30 al:1
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCu..................... len:30 al:2
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCAu.................... len:31 al:1
...........................................UUUAGUGUCUGGCAGUAUGUUAUUUUUCCAA.................... len:31 al:10
..............................................AGUGUCUGGCAGUAUGUUAUUUUUCCAAUU.................. len:30 al:1
..................................................UCcGGCAGUAUGUUAUUUUUC....................... len:21 al:3
..................................................UCUGaCAGUAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................UuUGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................gCUGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................aCUGGCAGUAUGUUAUUUUUCCA..................... len:23 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCu..................... len:23 al:218
..................................................UCUGGCAGUAUGUUAcUUUUCCAAU................... len:25 al:3
..................................................UCUGGCgGUAUGUUAUUUUUC....................... len:21 al:2
..................................................UCUGGCAGUAUGUUAUUcUUCCAAU................... len:25 al:3
..................................................UCUGGCAGUuUGUUAUUUUUCCA..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCu...................... len:22 al:77
..................................................UCUGGCAGUAUGUUAUUUUcC....................... len:21 al:4
..................................................UCUGGCAGUAUGUUAUUUUUCCAAaU.................. len:26 al:4
..................................................UuUGGCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAuU................... len:25 al:4
..................................................UuUGGCAGUAUGUUAUUUUUCCA..................... len:23 al:1
..................................................UCUGGCAGUgUGUUAUUUUUC....................... len:21 al:3
..................................................UCUGGCAGUAUGUUuUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUcUCCAAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAAUc.................. len:26 al:30
..................................................UCUGGCAGUAUGUUAUUUUUCC...................... len:22 al:497
..................................................UCUGGCAGUAUGUUAUUUUUCaA..................... len:23 al:1
..................................................UCUaGCAGUAUGUUAUUUUUCCA..................... len:23 al:1
..................................................UCUGGCgGUAUGUUAUUUUUCCA..................... len:23 al:3
..................................................UCcGGCAGUAUGUUAUUUUUCC...................... len:22 al:2
..................................................UCUGGCAGUAUGcUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGCAGUAcGUUAUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGCAGUAUGUUAUcUUUCCAAU................... len:25 al:2
..................................................UCUGGCAGUAUGUUAUUUUcCCA..................... len:23 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCAAUUU................. len:27 al:5
..................................................UCUGGCAGUAUGUUAUUUUUCCA..................... len:23 al:416
..................................................UCUGGCAGUAUGaUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUU......................... len:19 al:25
..................................................UCUGGCAGUAUGgUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUgCCAAU................... len:25 al:1
..................................................UCUGGCAGUAUGcUAUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGuAGUAUGUUAUUUUUCCA..................... len:23 al:1
..................................................UCUGGCAGUAUGUUgUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUcUUUCCA..................... len:23 al:2
..................................................gCUGGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAAg................... len:25 al:6
..................................................UCUGGuAGUAUGUUAUUUUUCCAAU................... len:25 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCg..................... len:23 al:11
..................................................UCUGGCAGUAUGUUgUUUUUCC...................... len:22 al:1
..................................................UuUGGCAGUAUGUUAUUUUUCCAAUU.................. len:26 al:1
..................................................gCUGGCAGUAUGUUAUUUUUCCA..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAAcU.................. len:26 al:9
..................................................UCUGGCAGUgUGUUAUUUUUCCAAU................... len:25 al:7
..................................................UCUGGCAGUAUGUUAUUUUUCCAAa................... len:25 al:15
..................................................UCUGGCAGUAUGUUAUUUUUC....................... len:21 al:779
..................................................UCUGGCAGUAUGUUAUUUUU........................ len:20 al:169
..................................................UCUGGCAGUAUGUUAUUUcUCCAA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUaU......................... len:19 al:1
..................................................UCUGGCAGUAUGUUAUcUUUCCAAUU.................. len:26 al:2
..................................................UCUGGCAGUAUGUcAUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCuA..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAgU................... len:25 al:10
..................................................UCUGGCAGUAUGUUAUUU.......................... len:18 al:6
..................................................UCUGGCAGUAUGUUAUUUUcCC...................... len:22 al:2
..................................................UCUGGCAGUAcGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCa...................... len:22 al:51
..................................................UCUGGCgGUAUGUUAUUUUUCCAA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAc.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAAUU.................. len:26 al:197
..................................................UCUGGCAGUAUGUUAUUUUUCCAu.................... len:24 al:6
..................................................UCUGGCAGUAUGUUAUUUUcCCAA.................... len:24 al:3
..................................................UCUGGCAGUAUGUUAUUUUc........................ len:20 al:11
..................................................UuUGGCAGUAUGUUAUUUUU........................ len:20 al:1
..................................................cCUGGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUcUUCCAAUU.................. len:26 al:1
..................................................UCUGGCgGUAUGUUAUUUUUCC...................... len:22 al:2
..................................................UCUGGCgGUAUGUUAUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGCAGUAUGUUAUUaUUCCAAU................... len:25 al:2
..................................................UCUGGuAGUAUGUUAUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGuAGUAUGUUAUUUUUCC...................... len:22 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:802
..................................................UCUGGCAGUAUGUUAUUUUUCaAA.................... len:24 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAg.................... len:24 al:3
..................................................gCUGGCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUGaCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGcUAUUUUUC....................... len:21 al:2
..................................................UCUGGCAGUAUGUUgUUUUUCCA..................... len:23 al:2
..................................................UCUGGCAGUAUGUUgUUUUUCCAAU................... len:25 al:2
..................................................UCUGGCAGUAUGUUgUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGCAGUAUGUUAUUUc......................... len:19 al:1
..................................................UCUGGCAGUAUGUcAUUUUUCC...................... len:22 al:2
..................................................UCUGGCAGUAUGUUAUUUUUCCgAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUu....................... len:21 al:13
..................................................UCUGGCAGUgUGUUAUUUUUCCAA.................... len:24 al:2
..................................................UCUGGCAGUAUGUUAUUUUUa....................... len:21 al:3
..................................................UCUGGCAGUAUGUUAUUUUUCCAAc................... len:25 al:97
..................................................UCUGGCAGUAcGUUAUUUUUCCAA.................... len:24 al:1
..................................................UuUGGCAGUAUGUUAUUUUUC....................... len:21 al:2
..................................................UCUGGCAGUAUGUUAUUUUcCCAAU................... len:25 al:4
..................................................UCUGGCAGUAUGUUAaUUUUCCA..................... len:23 al:1
..................................................UCUGGCAGUgUGUUAUUUUUCCA..................... len:23 al:3
..................................................UCUGGCgGUAUGUUAUUUUUCCAAU................... len:25 al:6
..................................................UCcGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:8
..................................................UCUGGCAaUAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................cCUGGCAGUAUGUUAUUUUUCCAAUU.................. len:26 al:1
..................................................UCUGGCAGUgUGUUAUUUUUCC...................... len:22 al:3
..................................................UCUGGCAGUAUGUUAUUUUgCCA..................... len:23 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAAUa.................. len:26 al:8
..................................................UCUGGCAGUAgGUUAUUUUUCCAAU................... len:25 al:1
..................................................aCUGGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUa........................ len:20 al:1
..................................................UCUGGCAGgAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCCAA.................... len:24 al:92
..................................................UCUGGCAGUAUGUUAcUUUUCCA..................... len:23 al:1
..................................................UCUGGCAGUAUGcUAUUUUUCCA..................... len:23 al:1
..................................................UaUGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGCAGcAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGCAGcAUGUUAUUUUUCCAA.................... len:24 al:1
..................................................UCUGGCAGUAgGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAUGUUAUUUUUCuAAU................... len:25 al:1
..................................................aCUGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:1
..................................................UCUGGuAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................aCUGGCAGUAUGUUAUUUUUCC...................... len:22 al:1
..................................................UCUaGCAGUAUGUUAUUUUUC....................... len:21 al:1
..................................................UCUGGCAGUAcGUUAUUUUUCCAAU................... len:25 al:4
..................................................UCcGGCAGUAUGUUAUUUUUCCA..................... len:23 al:1
..................................................cCUGGCAGUAUGUUAUUUUUCCAAU................... len:25 al:6
..................................................UCUGGCAGUAUGUcAUUUUUCCAAU................... len:25 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCAAaU.................. len:25 al:2
...................................................CUGGCAGUAUGUUAUUUUUCCAAUU.................. len:25 al:2
...................................................CUGGCAGUAUGUUAUUUUUC....................... len:20 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCA..................... len:22 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCAAUa.................. len:25 al:1
...................................................CUGGCAGUAUGUUAUUUUU........................ len:19 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCAAUUU................. len:26 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCAAcU.................. len:25 al:1
...................................................CUGGCAGUAUGUUAUUUUUCCAAUUc................. len:26 al:1