Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000002l:7337508-7337601 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_3250.ps.pdf
Locus Name: Cluster_3250
AGAAUAUCAGUGAGGUUAAAAAUGAUCCCUGCUCUUAUGAAUGUAAUUAGGUUCAUAACAGUGAGGACCAUUCUUGACUUCAUUUCAUUUCUGU
((((....(((((((((((.((((.(((.((((.((((((((........)))))))).)))).))).)))).)))))))))))....)))).. (-30.70)
....................AAUGAUCCCUGCUCUUAUGAA..................................................... len:21 al:5
....................AAUGAUCCCUGCUCUUAUGAAc.................................................... len:22 al:9
....................AAUGAUCCCUGCUCUUAUGAAUuU.................................................. len:24 al:1
....................AAUGAUCCCUGCUCUUAUGAAU.................................................... len:22 al:63
....................AAUGAUCCCUGCUCUUAUGAAUaU.................................................. len:24 al:2
....................AAUGAUCCCUGCUCUUAUGA...................................................... len:20 al:7
....................AAUGAUCCCcGCUCUUAUGAAU.................................................... len:22 al:1
....................AuUGAUCCCUGCUCUUAUGAAU.................................................... len:22 al:1
....................AAUGAUCCCUGCUCUUAUG....................................................... len:19 al:6
....................AAUGAUCCCUGCUCUUAUGAAUGU.................................................. len:24 al:1
....................AAUGAcCCCUGCUCUUAUGA...................................................... len:20 al:1
....................AAUGuUCCCUGCUCUUAUGAAU.................................................... len:22 al:2
....................AAUGAUCCCUGCUCUUAUGAAa.................................................... len:22 al:2
....................AAUGAUCCCUGCUCUUAUGAAUu................................................... len:23 al:22
....................AAUGAUCCCUGCUCUUAU........................................................ len:18 al:5
....................AAUGAUCCCUGCUCUUAUGAAUa................................................... len:23 al:1
....................AAUGAUCCCUGCUCUUAUGAAUG................................................... len:23 al:1
....................AAUGAUCCCUGCUCUUAUGAAUc................................................... len:23 al:1
.....................AUGAUCCCUGCUCUUAUGAAU.................................................... len:21 al:2
.....................AUGAUCCCUGCUCUUAUGAAUu................................................... len:22 al:1
......................UGAUCCCUGCUCUUAUGAAU.................................................... len:20 al:2
...................................................UUCAUAACAGUGAGGACCAUUCU.................... len:23 al:11
...................................................UUCAUAACAGcGAGGACCAUUCU.................... len:23 al:1
....................................................UCAUAACAGUGAGGACCAUUCUUu.................. len:24 al:5
....................................................UCAUgACAGUGAGGACCAUUCU.................... len:22 al:1
....................................................UCAUAACAGUGAGGACCAUUCUU................... len:23 al:9
....................................................UCAUAACAGUGAGGACCAUUCa.................... len:22 al:9
....................................................UCAUAACAGUGAGGACCAUUCg.................... len:22 al:2
....................................................UCAUAACAGUGAGGACCAc....................... len:19 al:2
....................................................UCAUAACAGUGAGGACCAUUaU.................... len:22 al:1
....................................................UCAUAACAGUGgGGACCAUUCUU................... len:23 al:1
....................................................UCAUAACAGUGAGGACCAUUCU.................... len:22 al:127
....................................................UCAUAACAGUGAGGACCAU....................... len:19 al:7
....................................................UCAUAACAGUGAGGACCAUU...................... len:20 al:1
....................................................UCAUAACAGUGAGGACCAUUCaU................... len:23 al:1
....................................................UCAUAACAGUGAGGACCAUUCc.................... len:22 al:9
....................................................UCAUAACAGUGAGGACCAUcCU.................... len:22 al:2
....................................................UCAUAACAGUGAGGACCgUUCU.................... len:22 al:1
....................................................UCAUAACAGUGAGGACCAUUC..................... len:21 al:1
....................................................UCAUAACAGUGAGGACCAUUCUc................... len:23 al:1
....................................................UCAUAACAGUGAGGACCAaUC..................... len:21 al:1
.....................................................CAUAACAGUGAGGACCAUUCc.................... len:21 al:3
.....................................................CAUAACAGUGAGGACCAUU...................... len:19 al:1
.....................................................CAUAACAGUGAGGACCAUUCU.................... len:21 al:8
......................................................AUAACAGUGAGGACCAUUCU.................... len:20 al:5