Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000001l:20063072-20063168 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_2859.ps.pdf
Locus Name: Cluster_2859
UGUUGCAAGUUCAGCUUGGAUUAAGAACACCCAAAAUAGCUGAGGAUUUUGUUUCCUGCUAUAUUGAGUGUUCUAACUCCUGCGAGAGCCUAGUGCA
...((((.((((.((..(((...(((((((.(((.(((((..((((.......))))))))).))).)))))))...))).))..))))....)))) (-31.70)
.....................cAAGAACACCCAAAAUAGCUGAGG.................................................... len:24 al:1
.....................UAAGAACACCCAAAAUAGCUGAGG.................................................... len:24 al:16
.....................UAAGAACACCCAAAAUAGCUGAa..................................................... len:23 al:2
.....................UAAGAACACCCAAAAUAGCUGAGa.................................................... len:24 al:4
.....................UAAGAACACCCAAAAUAGCUGA...................................................... len:22 al:9
.....................UAAGAACACCCAAAAUAGCUGAG..................................................... len:23 al:4
.....................UAAGAACACCCAAAAUAGCUG....................................................... len:21 al:2
.....................UAAGAACACCCAAAAUAGCUGAGGAUU................................................. len:27 al:2
.....................UAAGAACACCCAAAAUAGCUGAu..................................................... len:23 al:1
.....................UAAGAACACCCAAAAUAGCUGAGGg................................................... len:25 al:1
.....................UAAGAACACCCAAAAUAGCUa....................................................... len:21 al:1
.....................UAAGAACACCCAAAAUAGCUGAGGA................................................... len:25 al:9
.....................UAAGAACACCCgAAAUAGCUGAGG.................................................... len:24 al:1
.....................UAAGAACACCCAAAAUAGCUGAGu.................................................... len:24 al:2
.....................UAAGAACgCCCAAAAUAGCUG....................................................... len:21 al:1
......................uAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:7
......................AAGAACACCCAAAAUAGCaG....................................................... len:20 al:1
......................uAGAACACCCAAAAUAGCU........................................................ len:19 al:1
......................AAGgACACCCAAAAUAGCUGAGGA................................................... len:24 al:7
......................AAGAgCACCCAAAAUAGCUGAG..................................................... len:22 al:2
......................AAGAACACCCAAAAUAGCUGAGGAUUUU............................................... len:28 al:3
......................AAGAACuCCCAAAAUAGCUGA...................................................... len:21 al:1
......................AAGAAgACCCAAAAUAGCUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAUAGCUGAGGAUUU................................................ len:27 al:2
......................AAaAACACCCAAAAUAGCUG....................................................... len:20 al:2
......................AAGAACACCCAAAAUAGCcGA...................................................... len:21 al:2
......................AAGAuCACCCAAAAUAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGuUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAUAGCUGA...................................................... len:21 al:900
......................AAGAACACCCAAAAUAGuUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAUAGCUuA...................................................... len:21 al:1
......................AAuAACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAUAGCUGgGG.................................................... len:23 al:3
......................AAGAACACCCAAAAUAGCUGgG..................................................... len:22 al:2
......................AAGAACACCCAAAAUAGCUcAGGA................................................... len:24 al:1
......................AAGAACACCCAAgAUAGCUGAGG.................................................... len:23 al:4
......................AAGuACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
......................gAGAACACCCAAAAUAGCUGAGGAU.................................................. len:25 al:2
......................AAuAACACCCAAAAUAGCUGAGGA................................................... len:24 al:3
......................AAGAACACCCAAAAUAGuUGAG..................................................... len:22 al:1
......................AAGAACACCCAAAAUAGCgG....................................................... len:20 al:3
......................AAGgACACCCAAAAUAGCUGAGG.................................................... len:23 al:10
......................AAGAACACCCAAAAUAGCUGAGGAg.................................................. len:25 al:1
......................AAGAACACCCAAAAUAGCUGAGGAcU................................................. len:26 al:1
......................AAGuACACCCAAAAUAGCUGAG..................................................... len:22 al:1
......................AgGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:6
......................gAGAACACCCAAAAUAGCUG....................................................... len:20 al:9
......................AcGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCUGAaG.................................................... len:23 al:1
......................uAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:1
......................AAGAACACCCAAgAUAGCUGA...................................................... len:21 al:1
......................AgGAACACCCAAAAUAGCUGA...................................................... len:21 al:16
......................AAGAACACCuAAAAUAGCUGAG..................................................... len:22 al:1
......................AAGAACACCCAAgAUAGCUGAG..................................................... len:22 al:2
......................AAGAACACCCAAAAUgGCUGAGGA................................................... len:24 al:1
......................AAGAACACCuAAAAUAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCUaA...................................................... len:21 al:4
......................AAGAACACCCAAAAUAGCUGg...................................................... len:21 al:17
......................AAGAACACCCAgAAUAGCUG....................................................... len:20 al:1
......................AAGAACACCCAAAAUAGC......................................................... len:18 al:3
......................AAGAACACCCAuAAUAGCUGAGG.................................................... len:23 al:2
......................AAGAACACCCAAgAUAGCUGAGGA................................................... len:24 al:1
......................AAGAAuACCCAAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAUAGCUGAGaAU.................................................. len:25 al:1
......................AAGAACACCCAAAAUAGCUG....................................................... len:20 al:215
......................AAGAACACCaAAAAUAGCUGAGGA................................................... len:24 al:2
......................AAGAACACCCAAAAUAGCUGAGGAgU................................................. len:26 al:1
......................AAGAACACCCAAAAUAGCUGAGGAUU................................................. len:26 al:38
......................AgGAACACCCAAAAUAGCUG....................................................... len:20 al:4
......................AAGAACACCCAAAAUAGCUGAGGAUa................................................. len:26 al:6
......................cAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:2
......................AAGAACACCuAAAAUAGCUGAGG.................................................... len:23 al:4
......................AAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:353
......................AAGAACACCCAAAAUAGCUGgGGA................................................... len:24 al:8
......................cAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:3
......................AAGAACACCCAgAAUAGCUGA...................................................... len:21 al:4
......................AAGAACACCCAAAAUAGCUGAuGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCUGAGGuU.................................................. len:25 al:3
......................AuGAACACCCAAAAUAGCUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAUAGCUGAGGg................................................... len:24 al:13
......................AAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:982
......................AAGAACgCCCAAAAUAGCUGA...................................................... len:21 al:4
......................AAGgACACCCAAAAUAGCUGA...................................................... len:21 al:3
......................AAGAACACCCgAAAUAGCUGAGGA................................................... len:24 al:2
......................AAGAACACCCAgAAUAGCUGAG..................................................... len:22 al:1
......................AAGAACACCCAAAAUAGCUGAGu.................................................... len:23 al:47
......................AAGAgCACCCAAAAUAGCUGA...................................................... len:21 al:8
......................AAGAACACCCAAAAUAGCgGAGGAUU................................................. len:26 al:1
......................AAGAACACCCAAAAUAGCUGAaGA................................................... len:24 al:1
......................AAGAACACCCgAAAUAGCUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAcAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCaGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCcGAGG.................................................... len:23 al:4
......................AAGAACACCCAAgAUAGCUG....................................................... len:20 al:3
......................AAGAACACCCuAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAUgGCUGA...................................................... len:21 al:3
......................AAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:977
......................AAGAACACCCAAAAUAGCUGAa..................................................... len:22 al:43
......................AAGAACACCCAAAAUAGuUGAGGA................................................... len:24 al:5
......................AAGAACACCCAAAAUAGCUc....................................................... len:20 al:4
......................uAGAACACCCAAAAUAGCUGA...................................................... len:21 al:5
......................AAGAACACCCAAAAUAGCcGAGGA................................................... len:24 al:5
......................AAGAACACCCAgAAUAGCUGAGG.................................................... len:23 al:3
......................cAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
......................AAGAACgCCCAAAAUAGCUGAGG.................................................... len:23 al:4
......................AAGAACACCCAAAAUgGCUGAG..................................................... len:22 al:1
......................AAGAACACCCAAAAUAGCc........................................................ len:19 al:1
......................AAGAACACCCgAAAUAGCUG....................................................... len:20 al:1
......................gAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:8
......................AAGgACACCCAAAAUAGCUGAG..................................................... len:22 al:1
......................gAGAACACCCAAAAUAGCUGA...................................................... len:21 al:16
......................AcGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAaAGCUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAUAGCUGAGa.................................................... len:23 al:276
......................AAGAACACCCAAAAcAGCUGAGG.................................................... len:23 al:1
......................AAGAACACaCAAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAUAGCUGAc..................................................... len:22 al:1
......................AAGAACACCCuAAAUAGCUGAG..................................................... len:22 al:1
......................AAGAACACCCAAAAUAGCUGAGGAUg................................................. len:26 al:1
......................AAGAACAuCCAAAAUAGCUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAUAGCUGAGGAUc................................................. len:26 al:5
......................AAGAACACCCAuAAUAGCUGA...................................................... len:21 al:1
......................AgGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:10
......................AAcAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCUGc...................................................... len:21 al:4
......................AAGAACACaCAAAAUAGCUG....................................................... len:20 al:1
......................AAGAACACCCAAAAUAGCUa....................................................... len:20 al:46
......................AAGAACAuCCAAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAACACCCAAAAUAGCa........................................................ len:19 al:1
......................AAGAgCACCCAAAAUAGCUG....................................................... len:20 al:1
......................AAGAgCACCCAAAAUAGCUGAGGA................................................... len:24 al:4
......................AAGAACACCCAAAAUgGCUGAGG.................................................... len:23 al:3
......................AAGAACACCCAAAAUAGCUGAGGgU.................................................. len:25 al:1
......................AAGAACgCCCAAAAUAGCUGAGGA................................................... len:24 al:7
......................gAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:9
......................gAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:18
......................AAGAACACCCAAAAUAGCUGAGGAa.................................................. len:25 al:9
......................AAGAACACCCAAAgUAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAAUAGCUGAGc.................................................... len:23 al:14
......................AAGAACACCCAAAgUAGCUGAGG.................................................... len:23 al:2
......................AAGAACACCaAAAAUAGCUGA...................................................... len:21 al:2
......................AAGAACACCCAAAAUAGCUGAGGAU.................................................. len:25 al:50
......................AAGAACACCCAAAAUAGCUGAGGAc.................................................. len:25 al:5
......................AAGAgCACCCAAAAUAGCUGAGG.................................................... len:23 al:2
......................AAGAACACCCAAAAUAGu......................................................... len:18 al:3
......................AAGAACACCCAAAAUAGCUGAuG.................................................... len:23 al:2
......................cAGAACACCCAAAAUAGCUGA...................................................... len:21 al:3
......................AAGAACACCCAAAAUAGCUGAu..................................................... len:22 al:3
......................AuGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
......................AAGAAuACCCAAAAUAGCUGAG..................................................... len:22 al:1
......................AAGAACACCCAAAAUAGCUGAGcA................................................... len:24 al:6
......................AAGAACACCCAAAAUAGCcG....................................................... len:20 al:1
......................AAGAACACCCAAAAUAGCU........................................................ len:19 al:7
......................AAGAACACCCgAAAUAGCUGAGG.................................................... len:23 al:2
......................AAGAACACCCAAAAUAGCUcA...................................................... len:21 al:3
......................AAGAcCACCCAAAAUAGCUGA...................................................... len:21 al:1
......................AAGAACACCCAAAAUAGCUGu...................................................... len:21 al:24
......................uAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:11
......................AgGAACACCCAAAAUAGCUGAG..................................................... len:22 al:2
......................AAGAACACCCAAAAUAGCUGAGGu................................................... len:24 al:27
......................AAGAACACCCAAAAUAGCUu....................................................... len:20 al:14
......................AAGAACACCCAAAAUAaCUGAGG.................................................... len:23 al:1
......................AuGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
......................AAGAACACCCAAAgUAGCUGA...................................................... len:21 al:1
.......................AGAACACCCAAAAUAGCUGAGG.................................................... len:22 al:1
.......................AGAACACCCAAAAUAGCUGgGG.................................................... len:22 al:1
.......................AGgACACCCAAAAUAGCUGAGGA................................................... len:23 al:2
.......................uGAACACCCAAAAUAGCUGAGG.................................................... len:22 al:2
.......................AGAACACCCAAAAUAGCUGAGGA................................................... len:23 al:2
........................GAACACCCAAAAUAGCUGA...................................................... len:19 al:1
........................GAACACCCAAAAUAGCUGAG..................................................... len:20 al:1
...........................CACCCAAAAUAGCUGAGGA................................................... len:19 al:1
.............................CCCAAAAUAGCUGAGGAUUU................................................ len:20 al:1
............................................GAUUUUGUUUCCUGCUAUAUUGAGUGU.......................... len:27 al:1
..............................................UUUUGUUUCCUGCUAUAUUGAGUGU.......................... len:25 al:1
.......................................................CUGCUAUAcUGAGUGUUCUAAC.................... len:22 al:1
.......................................................CUGCUAUAUUGAGUGUUC........................ len:18 al:1
.......................................................CUGCUAUAUUGAGUGUUCUA...................... len:20 al:1
.......................................................CUGCUAUAUUGAGUGUUCUAACU................... len:23 al:12
.......................................................CUGCUAUAUUGAGUGUUCUAACa................... len:23 al:1
.......................................................CUGCUAUAUUGAGUGUUCUAACc................... len:23 al:1
.......................................................CUGCUAUAUUGAGUGUUCUAAuU................... len:23 al:1
.......................................................CUGCUAUAUUGAGUGUUCUAAC.................... len:22 al:32
.......................................................CUGCUAUAUUGAGUGUUCUAAu.................... len:22 al:2
.......................................................CUGCUAUAUUGAGUGUUCc....................... len:19 al:1
........................................................UGCUAUAUUGAGUGUUCUAAC.................... len:21 al:1