Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:13351746-13351842 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_1951.ps.pdf
Locus Name: Cluster_1951
ACAGUUUCUGUCCGUGGCUCUAAAAUGUCGGUUGCUUAAGCUCUCUAAUAGUAAGCUCAAGCACACGACGUUUUGGAGCCACGGGCGGCAAAAGCAA
...(((((((((((((((((((((((((((..(((((.((((..((...))..)))).)))))..)))))))))))))))))))))))...)))).. (-55.30)
.CAGUUUCUGcCCGUGGCUC............................................................................. len:19 al:1
.CAGUUUCUGUCCGUGGCUC............................................................................. len:19 al:3
..AGUUUCUGUCCGUGGCUu............................................................................. len:18 al:2
...................CUAAAAUGUCGGUUGCUUAAGCU....................................................... len:23 al:2
....................UAAAAUGUCGGUUGCUUAuGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCUUAAGCUCa..................................................... len:24 al:7
....................UAAAAUGUCGGUUGCUUAAGCUu...................................................... len:23 al:54
....................UAAAAUGUCGGUUGCUUAAGg........................................................ len:21 al:1
....................UAAAAUGUCGGUUuCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCGGgUGCUUAAGCU....................................................... len:22 al:4
....................UAAAAUGUCGGUUGCUUgA.......................................................... len:19 al:8
....................UAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7452
....................UAAAAUGUCGGUUGCUUAAGCa....................................................... len:22 al:1599
....................cAAAAUGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUUg........................................................... len:18 al:22
....................UAAAAUGUCaGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGaCGGUUGCUUAAGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGuUUA........................................................... len:18 al:2
....................aAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7
....................UAAAAUGUCGGUUGCgUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAGCcC...................................................... len:23 al:1
....................UAAAAUGUCGGUUGCUUAAGu........................................................ len:21 al:74
....................UAAgAUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................UAAAAaGUCGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUcAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUcGCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCGGUUGCUUAAu......................................................... len:20 al:2
....................gAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................UAgAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:17
....................UAAAgUGUCGGUUGCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUuCUUAAGCU....................................................... len:22 al:1
....................UgAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUuAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUgAGCU....................................................... len:22 al:1011
....................UAAAAUGUCGGUUGCUUgAGCUC...................................................... len:23 al:9
....................UAAAAUGUgGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAgAAUGUCGGUUGCUUAAGC........................................................ len:21 al:5
....................UAAcAUGUCGGUUGCUUAAGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCcUAAGCU....................................................... len:22 al:33
....................UAAAgUGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUgA........................................................... len:18 al:1
....................UAAgAUGUCGGUUGCUUAAGCU....................................................... len:22 al:15
....................UAAAAUGUuGGUUGCUUAAGCU....................................................... len:22 al:3
....................UAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:243
....................UAAAAUGUCGGcUGCUUAAGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUAAGCUCc..................................................... len:24 al:9
....................UAAAAUGUCGGUUGCUUAAaC........................................................ len:21 al:4
....................UAAAAUGUCGGUUGCUUc........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUUgAG......................................................... len:20 al:6
....................UAAAAUGUCGuUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAA.......................................................... len:19 al:12
....................cAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................UAAAAUGUCaGUUGCUUAAGCU....................................................... len:22 al:9
....................UAAAAUGUCGGUUGCUUAAGCc....................................................... len:22 al:1693
....................UAAAAcGUCGGUUGCUUA........................................................... len:18 al:2
....................UAAAAUGUCGGUUGCUaAAGCU....................................................... len:22 al:7
....................UAAAAUGcCGGUUGCUUAA.......................................................... len:19 al:1
....................UAAAAUGUCGGaUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGCUUAAuC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUcAG......................................................... len:20 al:2
....................UAgAAUGUCGGUUGCUUA........................................................... len:18 al:3
....................UAAAuUGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCGGUUGuUUAAGCU....................................................... len:22 al:11
....................UAAAAUGUCGGUUGCUUAAGCUa...................................................... len:23 al:137
....................UAAAAUGUCGGUaGCUUAAGCU....................................................... len:22 al:2
....................UAAAAUcUCGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCgUA........................................................... len:18 al:2
....................UAAAAUGUCGGUUGCUUAAGgU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAuCU....................................................... len:22 al:8
....................UAAAAUGUCGGUUGCcUA........................................................... len:18 al:2
....................UAAAAUGUCGGUcGCUUA........................................................... len:18 al:2
....................UAAAAUGUCGGUUGCUcA........................................................... len:18 al:8
....................UAAAAUGUCGGUUGCUgAAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUgAGC........................................................ len:21 al:39
....................UAAAAUuUCGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAcGUCGGUUGCUUAAGCU....................................................... len:22 al:24
....................UAAAAgGUCGGUUGCUUA........................................................... len:18 al:1
....................UAAAAUGUCuGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAGCUuU..................................................... len:24 al:10
....................UAAAAUGUCGGUUGCUcAAGCU....................................................... len:22 al:14
....................UAuAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGcCGGUUGCUUA........................................................... len:18 al:3
....................UAcAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:6
....................UAAAAUGUCGGcUGCUUA........................................................... len:18 al:2
....................UgAAAUGUCGGUUGCUUA........................................................... len:18 al:3
....................UAAAcUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................UcAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................UAAAAUGUCGGUUGCUUAAGCg....................................................... len:22 al:335
....................UAAAAUGUCGGUcGCUUAAGCU....................................................... len:22 al:29
....................UAAAAUGUCGGUUGCUUAAGCUg...................................................... len:23 al:1
....................UAAAAUGUCGGUUaCUUAAGCU....................................................... len:22 al:5
....................UAAAAUGUCGGUUGCUUAcGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAcC........................................................ len:21 al:2
....................UAAAAUGUCGGcUGCUUAAGCU....................................................... len:22 al:14
....................UAAAAUGUCGGUUGCUUAAGCUaU..................................................... len:24 al:7
....................UgAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:27
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAAUA............................................... len:30 al:2
....................UAAAAUGUCGGUUGCUUAAGCUCg..................................................... len:24 al:1
....................UAAAAUGUCGGUUGCUUAAaCU....................................................... len:22 al:24
....................UAAAAUGUCGGUUGCUUuA.......................................................... len:19 al:1
....................UAAAAUGUCGGUUGCaUAAGCU....................................................... len:22 al:2
....................UuAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................UAAAuUGUCGGUUGCUUAAGCU....................................................... len:22 al:3
....................UAAAAcGUCGGUUGCUUAAGC........................................................ len:21 al:3
....................UAAAAUGUCGGUUGCUUA........................................................... len:18 al:464
....................gAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................cAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:22
....................UAAAAUaUCGGUUGCUUAAGCU....................................................... len:22 al:4
....................UAAAAUGUCGGUUGCUUu........................................................... len:18 al:13
....................UAAAAUGUCGGUUGCUUAgGC........................................................ len:21 al:1
....................UAAAAUGUCGGUUGCUUAAGCUCUCUAAU................................................ len:29 al:1
....................UAAAAUGUCGGUUGCUUgAGCUCU..................................................... len:24 al:8
....................UAAAAUGUCGGUUGCUUAAGCcCU..................................................... len:24 al:1
....................UAAAAUGUCGGUUGCUUAAcCU....................................................... len:22 al:4
....................UAAAgUGUCGGUUGCUUAAGCU....................................................... len:22 al:22
....................UAAAAUGUaGGUUGCUUAAGCU....................................................... len:22 al:1
....................UAAAAUGUCGGUUGCUUAAGuU....................................................... len:22 al:42
....................UAAAAUGUCGGUUGCUUAAGCUC...................................................... len:23 al:15
....................UAAAAUGUCGGUUGCUUAAGaU....................................................... len:22 al:11
....................UAAAgUGUCGGUUGCUUAAGCUC...................................................... len:23 al:1
....................UAAAAUGUCGGUUGCUUAAGCgC...................................................... len:23 al:1
....................UAAAAUGUCGGUUGCUUAAGa........................................................ len:21 al:4
....................UAAAAUGUCGaUUGCUUAAGCU....................................................... len:22 al:5
....................UAAAAUGUCGGUUGCUUAAG......................................................... len:20 al:35
....................UAAAAUGUCGGUUGCUUAAGCUCUCU................................................... len:26 al:2
....................UAAAAUGUCGGUUGCUUAgGCU....................................................... len:22 al:44
....................UAAAAUGUCGGUUGCUUAAa......................................................... len:20 al:4
....................UAAAAUGUCGGUUGCUaA........................................................... len:18 al:3
....................UAAAAUGUCGGUUGCUUAAGCUCU..................................................... len:24 al:17
....................UAAAAUGcCGGUUGCUUAAGCU....................................................... len:22 al:25
.....................AAAAUGUCGGUUGCUUAAGCa....................................................... len:21 al:8
.....................AAAAUGUCGGUUGCUUAAGCUCa..................................................... len:23 al:13
.....................AAAAUGUCGGUUGCUUgAGCUCU..................................................... len:23 al:25
.....................AAAAUGUCGGUUGCUUgAGCU....................................................... len:21 al:15
.....................AAAAUGUCGGUUGCUUAAGCUaU..................................................... len:23 al:2
.....................AAAAUGUCGGUUGCUUAAGCUCUu.................................................... len:24 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCUa.................................................... len:24 al:1
.....................AAAAUGUCGGUUGCUUAAGCcCU..................................................... len:23 al:2
.....................AAAAUGUCGGUUGCUUAAGCc....................................................... len:21 al:11
.....................AAAAUGUCGGUUGCUUAAGCUuU..................................................... len:23 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCc..................................................... len:23 al:15
.....................AAAAUGUCGGUUGCUUAAGCUaUC.................................................... len:24 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCg..................................................... len:23 al:2
.....................AAAAUGUCGGUUGCUUAAGCU....................................................... len:21 al:36
.....................AAAAUGUCGGUUGCUUAA.......................................................... len:18 al:1
.....................AAAAUGUCGGUUGCUUgAGC........................................................ len:20 al:3
.....................AAAAUGUCGGUUGCUUgAGCUC...................................................... len:22 al:7
.....................AAAAUGUCGGUUGCUUAAGCUC...................................................... len:22 al:4
.....................AAAAUGUCGGUUGCUUAAGCUu...................................................... len:22 al:4
.....................AAAAUGUCGGUUGCUUAAGC........................................................ len:20 al:4
.....................uAAAUGUCGGUUGCUUAAGCU....................................................... len:21 al:3
.....................AAAAUGUCGGUUGCUUAAGCUCU..................................................... len:23 al:34
......................AAAUGUCGGUUGuUUAAGCU....................................................... len:20 al:1
......................AAAUGUCGGUUGCUUAAGCU....................................................... len:20 al:4
......................AAAUGUCGGUUGCUUAAGCUCUu.................................................... len:23 al:1
......................AAAUGUCGGUUGCUUAAGCa....................................................... len:20 al:1
......................AAAUGUCGGUUGCUUAAGCUCU..................................................... len:22 al:3
......................uAAUGUCGGUUGCUUAAGCU....................................................... len:20 al:2
......................AAAUGUCGGUUGCUUAAGCUCa..................................................... len:22 al:1
......................AAAUGUCGGUUGCUUAAGCc....................................................... len:20 al:4
.......................AAUGUCGGUUGCUUAAGCU....................................................... len:19 al:1
.......................AAUGUCGGUUGCUUAAGC........................................................ len:18 al:1
.......................AAUGUCGGUUGCUUgAGCU....................................................... len:19 al:3
.......................AAUGUCGGUUGCUUAAGCa....................................................... len:19 al:1
.......................AAUGUCGGUUGCUUAAGCUCU..................................................... len:21 al:2
.......................AAUGUCGGUUGCUUAAGCc....................................................... len:19 al:2
........................AUGUCGGUUGCUUAAGCUCc..................................................... len:20 al:1
........................AUGUCGGUUGCUUAAGCUCU..................................................... len:20 al:1
.........................UGUCGGUUGCUUAAGCUCUCU................................................... len:21 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGUUUU....................... len:30 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGg.......................... len:27 al:1
..............................................AAUAGUAAGCUCAAGCACA................................ len:19 al:1
...................................................UAAGCUCAAGCACACGACGUUU........................ len:22 al:1
...................................................UAAGCUCAAGCACACGACGUUc........................ len:22 al:1
......................................................GCUCAAGCACACGACGUUUU....................... len:20 al:2
......................................................GCUCAAGCACACGACGUUUUG...................... len:21 al:1
......................................................GCUCAAGCACACGACGUUUUGG..................... len:22 al:2
......................................................GCUCAAGCACACGACGUUUUGa..................... len:22 al:1
......................................................GCUCAAGCACACGACGUUUc....................... len:20 al:1
.......................................................CUCAAGCgCACGACGUUUUGGA.................... len:22 al:1
.......................................................CUCAAGCACACGACGUUUUGGu.................... len:22 al:1
.......................................................CUCAAGCACACGACGUUUUGGAu................... len:23 al:1
.......................................................CUCAAGCACACGACGUUUUGGA.................... len:22 al:6
.......................................................CUCAAGCACACGACGUUU........................ len:18 al:1