Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000039l:35764-35856 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_19193.ps.pdf
Locus Name: Cluster_19193
AAGGAAUGUAUUUUAUUUCACGCAUCAUGUUUCCCUCUUUAUUUUAAAUCAAGGAGGAAGCAUGAUACGUAAAAUAAAGGAAAAAUAAAGAGG
..........((((((((.(((.(((((((((((.(((((..........)))))))))))))))).))).)))))))).............. (-24.80)
...................ACGCAUCAUGUUUCCCUCUUUA.................................................... len:22 al:1
....................CGCAUCAUGUUUCCCUCUUUu.................................................... len:21 al:1
....................CGCAUCAUGUUUCCCUCUUc..................................................... len:20 al:4
....................CGCAUCAUGUUUCCCUCa....................................................... len:18 al:1
....................CGCAUCAUGUUUCCCUCUUUAUa.................................................. len:23 al:1
....................CGCAUCAUGUUUCCCUCUUUA.................................................... len:21 al:11
....................uGCAUCAUGUUUCCCUCUUUAU................................................... len:22 al:2
....................CGCAUCAUGUUUCCCUCUUUAaU.................................................. len:23 al:1
....................CGCAUCAUGUUUCCCUCU....................................................... len:18 al:2
....................gGCAUCAUGUUUCCCUCUUUAU................................................... len:22 al:1
....................CGCAUCAUGUUUCCCUCUUUAUU.................................................. len:23 al:7
....................CGCAUCAUGUUUCCCUCUU...................................................... len:19 al:2
....................CGCAUCAUGUUUCCCUCUUUAU................................................... len:22 al:30
....................CGCAUCAUGUUcCCCUCUUUAU................................................... len:22 al:1
....................CGCAUCAUGUUUCCCUCcUU..................................................... len:20 al:1
....................CGuAUCAUGUUUCCCUCUUUAU................................................... len:22 al:1
....................uGCAUCAUGUUUCCCUCUUU..................................................... len:20 al:1
....................CGCAcCAUGUUUCCCUCUUUAU................................................... len:22 al:1
....................aGCAUCAUGUUUCCCUCUUUAU................................................... len:22 al:1
....................CGCAUCAUGUUUCCCUCUUU..................................................... len:20 al:4
................................................UCAAGGAGGAAGCAUGAUACGU....................... len:22 al:4
................................................UCAAGGAGGAAGCAUGAUACGUu...................... len:23 al:1
................................................UCAAGGAGGAAGCAUGAUACGc....................... len:22 al:4
................................................UCAAGGAGGAAGCAUGAUACGUA...................... len:23 al:3
.................................................CAAGGAGGAAGCAUGAUACGUAg..................... len:23 al:1
.................................................CAAGGAGGAAGCAUGAUACcU....................... len:21 al:3
.................................................CAAGGAGGAAGCAUGAUACGUAcA.................... len:24 al:1
.................................................gAAGGAGGAAGCAUGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACGa....................... len:21 al:4
.................................................CAAGGAGGAAGCAUGAUACGUg...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACGcA...................... len:22 al:3
.................................................CAAGGAGGAAGCAUGAUgCGUA...................... len:22 al:2
.................................................CAAGGAGGAAGCAUGAUACGUAc..................... len:23 al:21
.................................................CAAGGAGGAAGCAcGAUACGU....................... len:21 al:2
.................................................CAAGGAGGAAGCAcGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAgAC......................... len:19 al:1
.................................................CAAGGAGGAAGCAUGAUAC......................... len:19 al:3
.................................................CAAGGAGGAAGCAUGAUA.......................... len:18 al:4
.................................................uAAGGAGGAAGCAUGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACGUA...................... len:22 al:130
.................................................gAAGGAGGAAGCAUGAUACGU....................... len:21 al:1
.................................................CAAGGAGGAAGCAUGAUACGc....................... len:21 al:38
.................................................CAAGGAGGAAGCAUGAUACGUAu..................... len:23 al:98
.................................................CAAGGAGGAAGCAUGAUACGUAA..................... len:23 al:2
.................................................CAAGGAGGAAGCAUGAUACGU....................... len:21 al:105
.................................................CAgGGAGGAAGCAUGAUACGUA...................... len:22 al:1
.................................................CAAGGAGGAAGCAUGAUACGUu...................... len:22 al:9
.................................................uAAGGAGGAAGCAUGAUACGU....................... len:21 al:2
.................................................CAAGGAGGAAGCAUGAUACGUc...................... len:22 al:5
.................................................CAAGGAGGAAGCAUGAUAuGUAA..................... len:23 al:1
.................................................CAAGGAGGAAGCAUGgUAC......................... len:19 al:2
.................................................CAAGGAGGAAGCAUGAUACGUAuA.................... len:24 al:3
.................................................CAAGGAGGAAGCAUGAUACGg....................... len:21 al:2
..................................................AAGGAGGAAGCAUGAUACGUAA..................... len:22 al:1
..................................................AAGGAGGAAGCAUGAUACGUAu..................... len:22 al:4
..................................................gAGGAGGAAGCAUGAUACGUA...................... len:21 al:1
..................................................AAGGAGGAAGCAUGAUACGUA...................... len:21 al:2
..................................................AAGGAGGAAGCAUGAUACGU....................... len:20 al:2
...................................................AGGAGGAAGCAUGAUACGUA...................... len:20 al:16
...................................................AGGAGGAAGCAUGAUACGUAu..................... len:21 al:6
...................................................AGGAGGAAGCAUGAUACGcA...................... len:20 al:2
...................................................AGGAGGAAGCAUGAUACGUAA..................... len:21 al:1
...................................................AGGAGGAAGCAUGAUACGUu...................... len:20 al:1
...................................................AGGAGGAAGCAUGAUACGU....................... len:19 al:9