Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000035l:8367726-8367821 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_18772.ps.pdf
Locus Name: Cluster_18772
GGAAAUUUUGUCUCUAAAGGCGGUGAAAGUCGCUUCAAUACACAUUUGAUGUAUAUUGUACGACUCUCAUCGUGUUUCAGACAAUUACUUGAACCA
.......((((((..(((.(((((((.(((((...(((((.((((...)))).)))))..))))).))))))).))).))))))............ (-29.00)
....................CGGUGAAAGUCGCUUCAAaACACA.................................................... len:24 al:1
....................CaGUGAAAGUCGCUUCAAUACACA.................................................... len:24 al:1
....................CGGUGAAAGUCGCUUCAAUACACA.................................................... len:24 al:24
....................CGGUGAAAGUCGCUUCAAUACAC..................................................... len:23 al:4
....................CGGUGAAAGUCGCUUCAAUACA...................................................... len:22 al:1
....................CGGUGAAAGUCGCUUCAAUgCACA.................................................... len:24 al:1
....................CGGUGAAAGUCGCUUCAAUACAu..................................................... len:23 al:1
.......................UGAAAGUCGCUUCAAUACACAUUUGA............................................... len:26 al:1
..........................................CAUUUGAUGUAUAUUGUACGACUCUCAUu......................... len:29 al:1
...........................................AUUUGAUGUAUAUUGUACGACUCUCAUCGUa...................... len:31 al:1
............................................UUUGAUGUAUAUUGUACGACUCUCAUCGUa...................... len:30 al:1
............................................UUUGAUGUAUAUUGUACGACUCUCAUCGUGU..................... len:31 al:1
............................................UUUGAUGUAUAUUGUACGACUCUCAUCGUG...................... len:30 al:5
............................................UUUGAUGUAUAUUGUACGACUCUCAUCGa....................... len:29 al:2
...................................................UAUAUUGUACGACUCUCAUgGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACUCUCAUCGcGU..................... len:24 al:3
...................................................UAUAUcGUACGACUCUCAUC......................... len:20 al:1
...................................................UAUAUUGUACGACUCUCA........................... len:18 al:1
...................................................UAUAUUGUACGACUCUCAUa......................... len:20 al:9
...................................................UAUAUUGUACGACUCUCAU.......................... len:19 al:41
...................................................UAUAUUGUACGACUCUCAcCGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGUU.................... len:25 al:33
...................................................UAUAUUGUACGACUCUCAUCGUG...................... len:23 al:369
...................................................UAUAUUGUACGACUCUCAUCGUGaU.................... len:25 al:1
...................................................UAUAUUGUACuACUCUCAUCGUGU..................... len:24 al:1
...................................................UAUAUUGUgCGACUCUCAUCGUG...................... len:23 al:9
...................................................UAUAUUGUACGACUCUCAUCGUuU..................... len:24 al:3
...................................................UAUAUUGUACGACcCUCAUCGUGU..................... len:24 al:6
...................................................UAUgUUGUACGACUCUCAUCGUGU..................... len:24 al:2
...................................................UAUAUUGUgCGACUCUCAUCGUGUU.................... len:25 al:1
...................................................UAUAUUGUACGACUCUCAUCcU....................... len:22 al:3
...................................................UAUAUUGUACGACUCUCAUu......................... len:20 al:15
...................................................UAUAUUGUgCGACUCUCAUC......................... len:20 al:2
...................................................UAUAUUGUACGACUCUCAUCGcG...................... len:23 al:2
...................................................UAUAUUGUACGACUCUCAUCGUuUU.................... len:25 al:1
...................................................UAcAUUGUACGACUCUCAUCGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACaCUCAUCGUGU..................... len:24 al:2
...................................................UAUAcUGUACGACUCUCAUCGUGU..................... len:24 al:2
...................................................UAUAUUGUACGACUCUCgUCGUG...................... len:23 al:1
...................................................UuUAUUGUACGACUCUCAUCGUG...................... len:23 al:2
...................................................UAUAUUGUACGACcCUCAUC......................... len:20 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGUc.................... len:25 al:9
...................................................UAUAUUGUgCGACUCUCAUCGUGU..................... len:24 al:14
...................................................cAUAUUGUACGACUCUCAUCGU....................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGg..................... len:24 al:11
...................................................UAUAUUGUACGACUCUCAUCGUGUg.................... len:25 al:1
...................................................UAUAUUGUACGACUCUCAUCGgG...................... len:23 al:2
...................................................UAUAUUGUACGACUCUCAUCa........................ len:21 al:6
...................................................UAUAUUGUACGACUCUCAUCaU....................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGUaU................... len:26 al:1
...................................................UAUAUUGUACGACUCUCAUCGU....................... len:22 al:98
...................................................UAUAUUGUACGACUCUCAUCG........................ len:21 al:10
...................................................UAUAUUGUACGACUCUCAUCu........................ len:21 al:3
...................................................UAUAUUGUACGACUCUCAUCGUcU..................... len:24 al:4
...................................................UAUAUUGUACGACUCUCAUCaUGU..................... len:24 al:1
...................................................UAUAUUGUACGACUCUCAcCGU....................... len:22 al:1
...................................................UAUAUUGaACGACUCUCAUCGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGUa.................... len:25 al:42
...................................................UAUAUUGUAuGACUCUCAUCGUGU..................... len:24 al:2
...................................................UAUAUUGUACGACUCUCAUCGaGU..................... len:24 al:2
...................................................UAUAUUGUACGACUCUCAcC......................... len:20 al:1
...................................................UAUAUUGUACGgCUCUCAUCGUGU..................... len:24 al:2
...................................................UAUAUUGUgCGACUCUCAUCGU....................... len:22 al:2
...................................................UAUAUUGUACGACUCUCAc.......................... len:19 al:2
...................................................UAUAUUGUACGACcCUCAUCGUG...................... len:23 al:4
...................................................UAUAUUGUACuACUCUCAUCGUG...................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCGc....................... len:22 al:22
...................................................UAUAUUGUACGACgCUCAUC......................... len:20 al:1
...................................................UAUAUUGUACGACUCUCAUCGaG...................... len:23 al:2
...................................................UAUAUUGUACGACUCUCgUCGUGU..................... len:24 al:2
...................................................UAUAUUGUACGACUCUCAUCGa....................... len:22 al:11
...................................................UAUAUUGUACGACUCUCAUCc........................ len:21 al:1
...................................................UAUAUUGUACGACUCUCAUuGUG...................... len:23 al:1
...................................................UAUAUcGUACGACUCUCAUCGUG...................... len:23 al:2
...................................................UAUAUUGUACGACUCUCgU.......................... len:19 al:1
...................................................UAUAUUGaACGACUCUCAUCGUGUU.................... len:25 al:1
...................................................UcUAUUGUACGACUCUCAUCGUGU..................... len:24 al:1
...................................................UcUAUUGUACGACUCUCAUCG........................ len:21 al:1
...................................................UAUAUUGUACGACUCUCAUCGUaU..................... len:24 al:3
...................................................UAUAUUGUACGgCUCUCAUCGUG...................... len:23 al:1
...................................................gAUAUUGUACGACUCUCAUCGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACUCcCAUCGUGU..................... len:24 al:2
...................................................UAUAUUGUACGACUCUCAUCGUGU..................... len:24 al:533
...................................................UAUAUUGUACGAuUCUCAU.......................... len:19 al:1
...................................................UAUAUUGUACGACUCaCAUCGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACcCUCAUCGU....................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGa..................... len:24 al:35
...................................................UAUAUUGUACGACUCUCAUCGUGc..................... len:24 al:81
...................................................UAUAUUGUACGACUCcCAUCGUGUU.................... len:25 al:2
...................................................UAUAUUGUACGACUCUCAcCGUG...................... len:23 al:1
...................................................UAUAUcGUACGACUCUCAUCGUGU..................... len:24 al:4
...................................................UAUAUUGcACGACUCUCAUCGUGU..................... len:24 al:2
...................................................UAUAUUGUACGACUCUCAUCGUa...................... len:23 al:111
...................................................UAUAUUGUACGACUCUCAUCGUu...................... len:23 al:22
...................................................cAUAUUGUACGACUCUCAUCGUGU..................... len:24 al:1
...................................................UAUAUUGUACGACUCcCAUC......................... len:20 al:3
...................................................UAUAUUGUACGACUCUCAUCGUc...................... len:23 al:7
...................................................UAUAUUGUACGACUCUCAUuGU....................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGg....................... len:22 al:6
...................................................UAUAUUGUACGACUCUCAUC......................... len:20 al:127
....................................................AUAUUGUACGACUCUCAUCGUGUU.................... len:24 al:1
....................................................AUAUUGUACGACUCUCAUCGUGc..................... len:23 al:2
....................................................AUAUUGUACGACUCUCAUCGaG...................... len:22 al:1
....................................................AUAUUGUACGACUCUCAUCGaGU..................... len:23 al:1
....................................................AUAUUGUACGACUCUCAUCGU....................... len:21 al:3
....................................................AUAUUGUACGACUCUCAUCGUa...................... len:22 al:3
....................................................AUAUUGUACGACUCUCAcCGUGU..................... len:23 al:1
....................................................AUAUUGUACGACUCUCAUC......................... len:19 al:3
....................................................AUAUUGUACGACUCUCAUCGUGU..................... len:23 al:22
....................................................AUAUUGUACGACUCUCAUCGUG...................... len:22 al:5
....................................................AUAUUGUACGACUCUCAUCGUGa..................... len:23 al:1
....................................................AUAUUGUACGgCUCUCAUCGUGU..................... len:23 al:1
.....................................................UAUUGUACGACUCUCAUCGUGc..................... len:22 al:1
.....................................................UAUUGUACGACUCUCAUCGUGU..................... len:22 al:2
.....................................................UAUUGUACGACUCUCAUCGU....................... len:20 al:2
.....................................................UAUUGUACGACUCUCAUCGUGUU.................... len:23 al:1
.....................................................UAUUGUACGACUCUCAUCGUG...................... len:21 al:1
.....................................................UAUUGUACGACUCUCAUC......................... len:18 al:1
.......................................................UUGUACGACUCUCAUCGU....................... len:18 al:1
.......................................................UUGUACGACcCUCAUCGU....................... len:18 al:1
.......................................................UUGUACGACUuUCAUCGU....................... len:18 al:1