Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000035l:4808338-4808432 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_18723.ps.pdf
Locus Name: Cluster_18723
AGUUUUGAAUGAAAUUGUAGUGGCUCUUUUAAGUAGUUGAAUAAUUAAAUUUACUCACUGCUUAAAAGAGUCACUACAGCUUUGUCUUACUUUAC
........(((((.(((((((((((((((((((((((.((.(((......))).))))))))))))))))))))))))).))))).......... (-36.40)
.GUUUUGAAUGAAAUUGUAGa.......................................................................... len:20 al:1
.GUUUUGAAUGAAAUUGUAGU.......................................................................... len:20 al:8
..UUUUGAAUGAgAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGgAAUUGUAGU.......................................................................... len:19 al:1
..UUUUGAAUGAAAUUaUAGU.......................................................................... len:19 al:1
..UUUUGgAUGAAAUUGUAGU.......................................................................... len:19 al:2
..UUUUGAAUGAAAUUGUAGU.......................................................................... len:19 al:77
..UUUUGAAUGAAAUUGUAGa.......................................................................... len:19 al:5
..UUUUGAAUGAAAcUGUAGU.......................................................................... len:19 al:1
..cUUUGAAUGAAAUUGUAG........................................................................... len:18 al:1
...UUUGAAUGAAAUUGUAGa.......................................................................... len:18 al:1
...UUUGAAUGAAAUUGUAGU.......................................................................... len:18 al:13
.......AAUGAAAUUGUAGUGGCUCUUUUAAGUAGUU......................................................... len:31 al:1
..........GAAAUUGUAGUGGCUCUUUUAAGU............................................................. len:24 al:1
...........AAAUUGUAGUGGCUCUUUUAAGUAGUU......................................................... len:27 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAA................................................... len:24 al:4
....................UGGCUCUUUUAAGUAGUUGAAUA.................................................... len:23 al:9
....................UGGCUCUUUUAAGUAGUUGAAU..................................................... len:22 al:4
....................UGGCUCUUUUAAGUAuUUGAAUA.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAc..................................................... len:22 al:4
....................UGGCUCUUUUAAGUgGUUGAAUAA................................................... len:24 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAa.................................................. len:25 al:1
....................UGGCUCUUUUAAGUAGUcGAAU..................................................... len:22 al:1
....................UGGCUCUUUUAAGUAGUUGAAUc.................................................... len:23 al:1
....................UGGCUCUUUUAAGUAGUUGAAUAAUU................................................. len:26 al:2
....................UGGCUCUUUUAAGUAGUUGAAUu.................................................... len:23 al:3
.....................GGCUCUUUUAAGUAGUUGAAU..................................................... len:21 al:1
.......................CUCUUUUAAGUAGUUGgAUAA................................................... len:21 al:2
........................UCUUUUAAGUAGUUGgAUAA................................................... len:20 al:3
..........................UUUUAAGUAGUUGgAUAA................................................... len:18 al:1
..................................................UUACUCACUGCUUAAAAGA.......................... len:19 al:2
....................................................ACUCACUGCUUAAAAGgGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCuCU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCACa.................... len:23 al:23
....................................................ACcCACUGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCACUuC.................. len:25 al:2
....................................................ACUCACUGCUUAAAAGAGUCA...................... len:21 al:1
....................................................ACUCACUGCUUAAAAGAa......................... len:18 al:1
....................................................ACUCACUGCUUAAAAGAaU........................ len:19 al:1
....................................................ACUCACUGCUUAAAuGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCAg..................... len:22 al:1
....................................................ACUCACUGCUUAAAAGAGUCACU.................... len:23 al:192
....................................................ACUCACUGCUUAAAAGAGUCACUu................... len:24 al:13
....................................................ACUCACUGCUUAAAAGAGUCACc.................... len:23 al:44
....................................................ACUCACcGCUUAAAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAgGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAgAAGAGUCACU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGUCACUA................... len:24 al:1
....................................................ACUCACUGCUUAAAAGAGUCcCU.................... len:23 al:1
....................................................ACUCACUGCUUAAAAGAGcCACU.................... len:23 al:1
....................................................gCUCACUGCUUAAAAGAGUCACU.................... len:23 al:10
....................................................ACUCACUGCUUAAAAGAGUCAu..................... len:22 al:1
....................................................ACUCACUGCUUAAAAGAuUCACU.................... len:23 al:3
....................................................ACUCACUGCUUAAAAGAGUCACg.................... len:23 al:10
....................................................ACaCACUGCUUAAAAGAGUCAC..................... len:22 al:2
....................................................ACUCACUGCUUAAAAGAGUCAC..................... len:22 al:3
....................................................ACUCACUGCUUAAAAGAGUCACUc................... len:24 al:5
....................................................ACUCACUGCUUAAAAGAcUCACU.................... len:23 al:2
.....................................................CUCACUGCUUAAAAGAGUC....................... len:19 al:4
.....................................................CUCACUGCUUAAAAGAGUCACg.................... len:22 al:13
.....................................................CUCACUGCUUAAAAGAGUCACcA................... len:23 al:1
.....................................................CUCACUGCUUAAAAGAGcCACU.................... len:22 al:6
.....................................................CUCACUGCUUAAAAGAGUCACc.................... len:22 al:107
.....................................................CUCACUGCUUAAAAGAGUCAC..................... len:21 al:20
.....................................................CUCACUGCUUgAAAGAGUCACU.................... len:22 al:1
.....................................................CaCACUGCUUAAAAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAuGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAAAAGAGaCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCgCU.................... len:22 al:1
.....................................................CUCAuUGCUUAAAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAgGAGUCACU.................... len:22 al:7
.....................................................CcCACUGCUUAAAAGAGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAGUCAuU.................... len:22 al:2
.....................................................CUCACUGCUUAAAAGAcUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCA...................... len:20 al:1
.....................................................CUCACUGCUUAAAAGAGUa....................... len:19 al:1
.....................................................CUCACUGCUUAAAAGAGUCu...................... len:20 al:3
.....................................................CUCACUGCUUAAAAGAGUCACU.................... len:22 al:502
.....................................................CUCACUGCUUAAAAGAGUCACUuC.................. len:24 al:4
.....................................................CUCACUGCUUAAAAGAGUCACUu................... len:23 al:10
.....................................................CUCACUGCUUAAAAGAGUCAa..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGgGUCAC..................... len:21 al:1
.....................................................CUCACUGCUUAAAAGAGUCACUc................... len:23 al:3
.....................................................CUCgCUGCUUAAAAGAGUCACU.................... len:22 al:3
.....................................................CUCACUGCUUAAAAGgGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCcCU.................... len:22 al:6
.....................................................CUCACUGCUUAAAAGAGUCAu..................... len:21 al:3
.....................................................CUCACUGCUUAAAAGAuUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGUCACa.................... len:22 al:58
.....................................................CUCACcGCUUAAAAGAGUCACU.................... len:22 al:2
.....................................................CUCACUGCUUAgAAGAGUCACU.................... len:22 al:1
.....................................................CUCACUGCUUAAAAGAGU........................ len:18 al:1
.....................................................CUCACUGCUUAAAAGAGUu....................... len:19 al:1
......................................................UCACUGCUUAAAAGAGUCACa.................... len:21 al:2
......................................................UCACUGCUUAAAAGAGUCACU.................... len:21 al:10
......................................................UCACUGCUcAAAAGAGUCACU.................... len:21 al:1
......................................................UCACUGCUUAAAAGAGUCgCU.................... len:21 al:1
......................................................cCACUGCUUAAAAGAGUCACU.................... len:21 al:1
.......................................................CgCUGCUUAAAAGAGUCACU.................... len:20 al:1
.......................................................CACUGCUUAAAAGAGUCACg.................... len:20 al:1