Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:7263486-7263580 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_1862.ps.pdf
Locus Name: Cluster_1862
CAGAGAUUUUGCAUUGCAUUUUUCAAAUUAGGAAGGGAGGUGUUUUACUGAACACCGCUCUGCUAAUUUGAAGAGAUACAGUGUAAGAAUUUGCA
((((..((((((((((..(((((((((((((..((((.(((((((....))))))).)))).)))))))))))))...)))))))))).)))).. (-37.30)
CAGAGAUUUUGCAUUGCAUU........................................................................... len:20 al:2
.AGAGAUUUUGCAUUGCAcU........................................................................... len:19 al:2
.AGAGAUUUUGCAUUGCAUU........................................................................... len:19 al:6
...................cUUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:26 al:2
...................UUUUCAAAUUAGGAAGGGAGGUGUa................................................... len:25 al:3
...................UUUUCAAAUUAGGAAGGuAGGUGUU................................................... len:25 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:26 al:3
...................UUcUCAAAUUAGGAAGGGAGGUGU.................................................... len:24 al:2
...................UUUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:27 al:1
...................UaUUCAAAUUAGGAAGGGAGGUGU.................................................... len:24 al:1
...................UUUUCAAAUUAGGAAGGGAGGc...................................................... len:22 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGg.................................................... len:24 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGUU................................................... len:25 al:12
...................UUUUCAAAUUAGGAAGGGAGGUGUc................................................... len:25 al:1
...................UUUUCAAAUUAGGAAGGGAGGUa..................................................... len:23 al:4
...................UUUUCAAAUUAGGAAGGGAGGUGU.................................................... len:24 al:24
...................UUUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:26 al:10
...................UUUUCAAAUUAGGAAGGGAGGUG..................................................... len:23 al:13
...................UUUUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:26 al:1
...................UUUUCAAAUUAGGAAGGGAGGU...................................................... len:22 al:3
...................UUUUCAAAUUAGGAAGGGAGcU...................................................... len:22 al:1
...................UUUUCAAAUUAGGAAGGGAGGUGc.................................................... len:24 al:7
....................UUUCAAAUUAGGAAGGGAGGgGUU................................................... len:24 al:4
....................UUUCAAAaUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUaUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUUUa................................................. len:26 al:75
....................UUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:573
....................UUUCAgAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUaU.................................................. len:25 al:9
....................UUUCAAAUUuGGAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGaGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUcGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGuAGGGAGGUGU.................................................... len:23 al:1
....................UUUaAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUc................................................ len:27 al:1
....................UUUCAAAUUAGaAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGgAGGGAGGUGUU................................................... len:24 al:13
....................UUUCAAAUUAGGAAGGGAGaUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAgGGGAGGUGUUU.................................................. len:25 al:3
....................UUUCAAAUUAGGAAGGGAGGcG..................................................... len:22 al:1
....................UUUCAAAUUAGGAAGGGAGu....................................................... len:20 al:1
....................UUUCAAAUUAGGAAGGGAGGUGcUU.................................................. len:25 al:16
....................UUUCAAAUUAGGuAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUACUG............................................. len:30 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:25 al:180
....................UUUCAAAUUAGGAAGGGAGGUGgU................................................... len:24 al:29
....................UUUCAAAUUAGGAAGGGAGGUGc.................................................... len:23 al:104
....................UUUCAAAUUuGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUc..................................................... len:22 al:2
....................UUUCAgAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:3004
....................UUUCAAAUUAGGAAGGGAGGcGUUUU................................................. len:26 al:1
....................UaUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGGAaGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGGAGGcGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAAGGGAGGUGg.................................................... len:23 al:14
....................UUUCAAAUUAGGAAGGGAGGUGUUUUAuU.............................................. len:29 al:1
....................UUUCAAAUUAGGAAGGGAGGUGa.................................................... len:23 al:25
....................UUUCgAAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UUUCAAgUUAGGAAGGGAGGUGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAAGGGAG........................................................ len:19 al:21
....................UUUCAAAUUAGGuAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUcU.................................................. len:25 al:15
....................UUUCAAAUUAGGAAGGGAGGa...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGGAGGUGaUU.................................................. len:25 al:10
....................UUUCAAAUUAGGAAGGGAGGUGUUaUA................................................ len:27 al:2
....................UUUCAAAUUAGGAAGGGAaGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGAGGUu..................................................... len:22 al:11
....................UUUCAAAUUAGGAAGGGAGGUGUaUU................................................. len:26 al:2
....................UUUCAAAUUAGGAcGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAAUUAGGAAGGGAa........................................................ len:19 al:4
....................UUcCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUcUU................................................. len:26 al:2
....................UUUCAAAUUAGGAgGGGAGGUGUU................................................... len:24 al:14
....................UUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1199
....................UUUCAAAUUAGGAAGGGAuGUGUU................................................... len:24 al:2
....................UUUCAgAUUAGGAAGGGAGGUGUU................................................... len:24 al:10
....................UUUCAAAUUAGGAAGGGAGGUGUUcU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGaG..................................................... len:22 al:1
....................UUUCAAAUUAGGgAGGGAGGUGUUU.................................................. len:25 al:8
....................UUUCAAAUUgGGAAGGGAGGUGU.................................................... len:23 al:3
....................UUUCAAAUUAGGAAGGGAGGcGUUU.................................................. len:25 al:1
....................cUUCAAAUUAGGAAGGGA......................................................... len:18 al:1
....................UcUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:10
....................UUUCAAAUUAGGAAGGGAGGU...................................................... len:21 al:84
....................UUUCAAAUUAGGAAGGGAGcU...................................................... len:21 al:1
....................UUUCAAAUUgGGAAGGGAGGUGUU................................................... len:24 al:5
....................UUUCAAAUUAGGAAaGGAGGUGUU................................................... len:24 al:1
....................cUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:6
....................UUUCAAgUUAGGAAGGGAGGUGU.................................................... len:23 al:2
....................UUUCAAAUUAGGAAGGGgGGUGU.................................................... len:23 al:6
....................UUUCAAAUUAGGgAGGGAGGUGU.................................................... len:23 al:2
....................UUUCAAAUUAGGAAGGGAGGUuU.................................................... len:23 al:4
....................UUUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:25 al:159
....................UUUCAAAUcAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAaGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGuGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUG..................................................... len:22 al:59
....................UUUCAAAUUAGGAAGGGAGGUGUc................................................... len:24 al:493
....................UUUuAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UaUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:2
....................UUUCAAAUUcGGAAGGGAGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAuGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGaU................................................... len:24 al:6
....................UUUCAgAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:2
....................UcUCAAAUUAGGAAGGGA......................................................... len:18 al:1
....................UUUCAAAUUAGGAAGGGA......................................................... len:18 al:13
....................UUUCAAAUUAGGAAGGGAGGUa..................................................... len:22 al:18
....................UUUCAAAcUAGGAAGGGAGGUGUU................................................... len:24 al:5
....................UUUCgAAUUAGGAAGGGAGGUGUU................................................... len:24 al:14
....................UUUCAAAUUgGGAAGGGAGGUGUUU.................................................. len:25 al:7
....................aUUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUcAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAgUUAGGAAGGGAGGUGUUU.................................................. len:25 al:3
....................UUUCAAAUUAGGAAGGGAGGUGUUaU................................................. len:26 al:39
....................UUUCAAgUUAGGAAGGGA......................................................... len:18 al:1
....................UUUCuAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUcU.................................................... len:23 al:3
....................UUcCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:4
....................UcUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:6
....................UUUCcAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAaGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGGAGa....................................................... len:20 al:8
....................gUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGgGGUGUU................................................... len:24 al:18
....................UUUCAAAUUAGGAAGGGAGuU...................................................... len:21 al:1
....................UUUCgAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:5
....................UUUCAAAUUAGGAAGGGgGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGc...................................................... len:21 al:14
....................UUUCAAAUUAGGAAGGGgGGU...................................................... len:21 al:1
....................UUUCAAAUUAGGAAGGaAGGUGUUU.................................................. len:25 al:2
....................UUUCAAuUUAGGAAGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGAAGGGAGGcGU.................................................... len:23 al:1
....................UUUCAAAUUAuGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUu................................................ len:27 al:37
....................UUUCAAAUUAGGAuGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUcGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUgU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGaUGUUU.................................................. len:25 al:1
....................UUUCAgAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUcAGGAAGGGAGGUGUU................................................... len:24 al:3
....................UUUCAAAUUAGGuAGGGAGGUGUUUU................................................. len:26 al:1
....................UUaCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUuUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUGcU................................................... len:24 al:137
....................UUUCAAAUUAGGAAGGaAGGUGUU................................................... len:24 al:2
....................UcUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:2
....................UUUCcAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUg.................................................. len:25 al:6
....................UUUCAAAUUAGGAAGGGg......................................................... len:18 al:3
....................cUUCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:27
....................UUUCAAAUUAGGAAaGGAGGUGU.................................................... len:23 al:1
....................UUcCAAAUUAGGAAGGGAGGU...................................................... len:21 al:1
....................UaUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUcCAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:8
....................UUUCAAAUUAGGAgGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUaU.................................................... len:23 al:3
....................UcUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:4
....................UUUCAAAUgAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUc................................................. len:26 al:20
....................UUUaAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:1
....................UUUuAAAUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGG....................................................... len:20 al:29
....................UUUCAAAUUAGGAAGGGAGGUGUg................................................... len:24 al:38
....................UUUCAAAcUAGGAAGGGAGGUGUUU.................................................. len:25 al:2
....................UUUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:215
....................cUUCAAAUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUuAAAUUAGGAAGGGAGGUGUU................................................... len:24 al:2
....................UUUCAAuUUAGGAAGGGAGGUGU.................................................... len:23 al:1
....................UUUCAAAUUAGGAAGGGgGGUGUUU.................................................. len:25 al:8
....................UUUCAuAUUAGGAAGGGAGGUGUUUU................................................. len:26 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUa................................................... len:24 al:177
....................UUUCAAuUUAGGAAGGGAGGUGUUU.................................................. len:25 al:1
....................UUUCAAAUUAGGAAGGGAGGUGUUUUA................................................ len:27 al:8
.....................UUCAAAUUAGGAAGGGAGGUGUc................................................... len:23 al:6
.....................UUCAAAUUAGGAAGGGAGGUGUg................................................... len:23 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUUc.................................................. len:24 al:2
.....................UUCAAAUUAGGAAGGGAGGUGU.................................................... len:22 al:3
.....................UcCAAAUUAGGAAGGGAGGUGUUU.................................................. len:24 al:1
.....................UUCAAAUUAGGAAGGGAGGUG..................................................... len:21 al:3
.....................UUCAAAUUAGGAAGGGAGGUGUUgU................................................. len:25 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUUU................................................. len:25 al:5
.....................UUCAAAUUAGGAAGGGAGGUGUUa.................................................. len:24 al:2
.....................UUCAAAUUAGGAAGGGAGGUGUa................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGgU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUUU.................................................. len:24 al:20
.....................UUCAAAUUAGGAAGGGAGGU...................................................... len:20 al:1
.....................UgCAAAUUAGGAAGGGAGGUGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGgGUU................................................... len:23 al:1
.....................UUCAAAUUAGGAAGGGAGGUGcUU.................................................. len:24 al:1
.....................UUCAAAUUAGGAAGGGAGGUGUU................................................... len:23 al:40
......................UCAAAUUAGGAAGGGAGGUGUa................................................... len:22 al:1
.......................CAAAUUAGGAAGGGAGGUGUU................................................... len:21 al:3
.......................gAAAUUAGGAAGGGAGGUGUU................................................... len:21 al:2
.......................CAAAUUAGGAAGGGAGGg...................................................... len:18 al:1
.......................CAAAUUAGGAAGGGAGGUGUUc.................................................. len:22 al:2
.......................CAAAUUAGGAAGGGAGGUGUa................................................... len:21 al:1
.......................CAAAUUAGGAAGGGAGGUGUUU.................................................. len:22 al:2
.......................CAAAUUAGGAAGGGAGGUGUc................................................... len:21 al:4
........................AAAUUAGGAAGGGAGGUGUa................................................... len:20 al:1
........................AAAUUAGGAAGGGAGGUGUUU.................................................. len:21 al:1
........................AAAUUAGGAAGGGAGGUGUc................................................... len:20 al:1
.........................AAUUAGGAAGGGAGGUGUU................................................... len:19 al:4
..........................AUUAGGAAGGGAGGUGUU................................................... len:18 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUUGAAGA..................... len:31 al:2
...........................................UUUACUGAACACCGCUCUGCUAAUUU.......................... len:26 al:1
...........................................UUUACUGAACACCGCUCUGCUAAUUUGAAG...................... len:30 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGAG.................... len:31 al:3
............................................UUACUGAACACCGCUCUGCUAAUUUGA........................ len:27 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAGAa.................... len:31 al:1
............................................UUACUGAACACCGCUCUGCUAAUUUGAAG...................... len:29 al:2
....................................................CACCGCUCUGCUAAUUUGAAGA..................... len:22 al:9
....................................................CACCGCUCUGuUAAUUUGAAGAG.................... len:23 al:1
....................................................CACCGCUCUGCUAAUUUGAAG...................... len:21 al:8
....................................................CACCGCUCUGCUAAUUUGAAu...................... len:21 al:1
....................................................CACCGCUCUGCUAAUUUGAAa...................... len:21 al:1
....................................................CACCGCUCUGCUAAUUUGAA....................... len:20 al:5
....................................................CACCGCUCUGCUAAUUUGAAGAGA................... len:24 al:4
....................................................CACCGCUCUGCUAAUUUGA........................ len:19 al:16
....................................................CACCGCUCUGCUAAUUUGAAGAc.................... len:23 al:1
....................................................CACCGCUCUGCUAAUUUGAAGu..................... len:22 al:1
.....................................................ACCGCUCUGCUAAUUUGA........................ len:18 al:1
......................................................uCGCUCUGCUAAUUUGAAG...................... len:19 al:1