Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ntLink_6:5157537-5157626 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_1832.ps.pdf
Locus Name: Cluster_1832
UGGAAUAAUGGCUGUGCGAGUCAAAUGUUUCGGCUUGUUCCCGUUUUCGGUAACAAGCCGAAGCAUUUAUCUCUCUCAGUCGCUGGAUCU
.(((.((.((((((.(.(((..(((((((((((((((((.(((....))).)))))))))))))))))..))).).)))))).))..))) (-43.00)
UGGAAUuAUGGCUGUGCG........................................................................ len:18 al:2
UGGAAUAAUGGCUGUGCGAGUu.................................................................... len:22 al:1
UGGAAUuAUGGCUGUGCGAGUC.................................................................... len:22 al:19
UGGAAUAAUGGCUGUGCGAGUC.................................................................... len:22 al:1
.GGAAUAAUGGCUGUGCGAGUC.................................................................... len:21 al:3
.GGAAUuAUGGCUGUGCGAGUC.................................................................... len:21 al:11
..GAAUAAUGGCUGUGCGAGUC.................................................................... len:20 al:7
..GAAUAAUGGaUGUGCGAGUC.................................................................... len:20 al:1
..GAAUAAUGGCUGUGCGAGUa.................................................................... len:20 al:2
..GAAUAgUGGCUGUGCGAGUC.................................................................... len:20 al:1
..GAAUuAUGGCUGUGCGAGUC.................................................................... len:20 al:65
...AAUAAUGGCUGUGCGAGUu.................................................................... len:19 al:4
...AAUAAUGGCUGUGCGAGUa.................................................................... len:19 al:4
...AAUAAUGGCUGUGCGAGUg.................................................................... len:19 al:2
...AAUuAUGGCUGUGCGAGU..................................................................... len:18 al:4
...AAUuAUGGCUGUGCGAGUC.................................................................... len:19 al:349
...AAUAAUGGCUGUGCGAaUC.................................................................... len:19 al:1
...AAUAAUGGCUGUGCGAGUC.................................................................... len:19 al:28
....AUAAUGGCUGUGCGAGUu.................................................................... len:18 al:1
....AUAAUGGCUGUGCGAGUg.................................................................... len:18 al:2
....AUuAUGGCUGUGCGAGUC.................................................................... len:18 al:32
....AUAAUGGCUGUGCGAGUC.................................................................... len:18 al:6
.....UuAUGGCUGUGCGAGUC.................................................................... len:17 al:2
.....UuAUGGCUGUGCGAGU..................................................................... len:16 al:4
....................UCcAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:4
....................UCcAAUGUUUCGGCUUGUUCC................................................. len:21 al:1
....................UCAAAUGUUUCGGCUUGUUCCCG............................................... len:23 al:1
.....................CcAAUGUUUCGGCUUGUUCCCG............................................... len:22 al:2
.....................CcAAUGUUUCGGCUUGUUCCCGUU............................................. len:24 al:1
......................AAAUGUUUCGGCUUGUUCCCuUUUU........................................... len:25 al:1
......................AAAUGUUUCGGCUUGUUCCC................................................ len:20 al:138
......................AAAUuUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AuAUGUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................cAAUGUUUCGGCUUGUUCCC................................................ len:20 al:301
......................AAAUGUUcCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:28
......................gAAUGUUUCGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCcUGUUCCCG............................................... len:21 al:2
......................AgAUGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................uAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:4
......................cAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:5366
......................AAAUGUUUgGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:824
......................gAAUGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAgUGUUUCGGCUUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUUCCu................................................ len:20 al:70
......................AgAUGUUUCGGCUUGUUCCCG............................................... len:21 al:11
......................AAAUGUUUCGGCUUGUUCCCcUU............................................. len:23 al:1
......................uAAUGUUUCGGCUUGUUCC................................................. len:19 al:6
......................AAAUGUUUCGGCUUGUUCCa................................................ len:20 al:95
......................cAAUGUUUCGGCUUGUUCCCGUUU............................................ len:24 al:11
......................gAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:5
......................AAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:28
......................gAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:4
......................AAAUGUUUCGGCUUGUUuCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCGc.............................................. len:22 al:5
......................AAAUGUUUCGGCUUGaUCC................................................. len:19 al:1
......................cAAUGUUUCGGCUUGUUCC................................................. len:19 al:615
......................AAAUGUUUCGGCUUuUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCcUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUUCCCGa.............................................. len:22 al:5
......................AAAUGUcUCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUUUCGGCUcGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUu.................................................. len:18 al:23
......................AAAUGcUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGUUUuGGCUUGUUCCCG............................................... len:21 al:1
......................AAAUGgUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUUCu................................................. len:19 al:106
......................AAAUGUUaCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAgGUUUCGGCUUGUUCCCG............................................... len:21 al:1
......................AcAUGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUcCCCG............................................... len:21 al:3
......................AcAUGUUUCGGCUUGUUCCCG............................................... len:21 al:4
......................AAAUGUUUCGGCUcGUUCCCG............................................... len:21 al:2
......................AAAUGUUUCaGCUUGUUC.................................................. len:18 al:1
......................gAAUGUUUCGGCUUGUUCC................................................. len:19 al:7
......................AAAcGUUUCGGCUUGUUCCCGU.............................................. len:22 al:1
......................AgAUGUUUCGGCUUGUUCC................................................. len:19 al:3
......................cAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:245
......................AAAUGUUUCGGCUUGUUCg................................................. len:19 al:8
......................AAAUGUUUCGGCUUGUUa.................................................. len:18 al:8
......................AAAUGUUUCGGCUUGUUCCCGgU............................................. len:23 al:1
......................AAAUGUUcCGGCUUGUUCC................................................. len:19 al:1
......................uAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:31
......................AAAUGUUUCGGCUUGUUCCCcU.............................................. len:22 al:6
......................AAAUGUUUCGGCUUGcUCCCG............................................... len:21 al:4
......................cAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:280
......................AAAUGUUUCGGCUUGUUCCCuUU............................................. len:23 al:1
......................AAgUGUUUCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUUUCGGCUUGUU................................................... len:17 al:2
......................cAAUGUUUCGGCUUGUUCCCGUUUU........................................... len:25 al:2
......................AAAUGUUUCGGCUUGUUCCuG............................................... len:21 al:4
......................AAAUGUUUCGGCUUGUUCCg................................................ len:20 al:5
......................AAAUGUUUCGGCUUGaUCCCG............................................... len:21 al:2
......................cAAUGUUUCGGCUUGUU................................................... len:17 al:1
......................AAAUGUUUCGGCUUGUUCCCu............................................... len:21 al:136
......................gAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:33
......................AAAUGUUUCGGCUUGUUCCuGU.............................................. len:22 al:1
......................AuAUGUUUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCuUUU............................................ len:24 al:1
......................uAAUGUUUCGGCUUGUUCCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUGUUCaC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUcCCCGU.............................................. len:22 al:1
......................AAAUGUUcCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUUUCGGCcUGUUC.................................................. len:18 al:2
......................AAAUGUUUCGGCUUGUaCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUcC.................................................. len:18 al:3
......................AAAcGUUUCGGCUUGUUCCCG............................................... len:21 al:4
......................AAAUGUUUCGGCUUGUUCCCuU.............................................. len:22 al:4
......................AAAUGUUUCGGCUUGUUCCCc............................................... len:21 al:59
......................AAAUGUUUCGGCUUGUUC.................................................. len:18 al:100
......................AAAUGUUUCGGCUUGUUuC................................................. len:19 al:1
......................uAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:5
......................AAAUGUUUCGGCUUGUUCa................................................. len:19 al:343
......................AAAUGUUUCGGCUUGUUCC................................................. len:19 al:232
......................cAAUGUUUCGGCUUGUUC.................................................. len:18 al:113
......................AAAUGUUUCGGCUUGUUCCCGUa............................................. len:23 al:2
......................AAAUGUUUCGGCUUGUUCCCGUc............................................. len:23 al:8
......................AAAUGUUUCGGCUUGUUCCCa............................................... len:21 al:611
......................AAAUGUUUCGGCUUGUUCuC................................................ len:20 al:4
......................AAAUGUcUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCGUg............................................. len:23 al:1
.......................AAUGUUUCGGCUUGUUCCCu............................................... len:20 al:22
.......................AgUGUUUCGGCUUGUUCC................................................. len:18 al:1
.......................AAUGUUUCGGCUUGUUCCu................................................ len:19 al:4
.......................AAUGUUUCGGCUUGUUCC................................................. len:18 al:15
.......................AAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:6
.......................AAUGUUUCGGCUUGUUCCCuU.............................................. len:21 al:2
.......................AAUGUUUCGGCUUGUUCa................................................. len:18 al:11
.......................AAUGUUUCGGCUUGUUCCCGa.............................................. len:21 al:1
.......................gAUGUUUCGGCUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCCa................................................ len:19 al:7
.......................AAUGUUUCGGCUUGUUaC................................................. len:18 al:1
.......................AAUGUUUCGGCUUGUUCaC................................................ len:19 al:1
.......................AAUGUUUCGGCUUGUUCCg................................................ len:19 al:1
.......................AAUGUUUCGGCcUGUUCCCG............................................... len:20 al:2
.......................AgUGUUUCGGCUUGUUCCC................................................ len:19 al:1
.......................gAUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:1
.......................AAUGUUUCGGCUUGUUCg................................................. len:18 al:3
.......................AAUGUUUCGGCUUGUUCCCa............................................... len:20 al:56
.......................AAUGUUUCGGuUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCu................................................. len:18 al:7
.......................AAUGUUUCGGCUUGUUCCCGc.............................................. len:21 al:3
.......................gAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCCCG............................................... len:20 al:101
.......................cAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:3
.......................cAUGUUUCGGCUUGUUCCCG............................................... len:20 al:1
.......................AAUGUUUCGGCUUGUUCCC................................................ len:19 al:10
.......................AAUGUUUCGGCUUGUUCCCuUU............................................. len:22 al:1
.......................AAUGUUUCGGCUUGUUCCCc............................................... len:20 al:5
.......................AAUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:1
........................AUGUUUCGGCUUGUUCCCGU.............................................. len:20 al:27
........................uUGUUUCGGCUUGUUCCC................................................ len:18 al:2
........................AUGUUUCGGCUUGUUCCCGcU............................................. len:21 al:2
........................AUGUUUCGGCUUGUUCCuG............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCCuUU............................................. len:21 al:2
........................AUGUUUCGGCUUGUUCCCGgU............................................. len:21 al:2
........................AUGUUUCGGCUUGUUCCCGUUUUCGGgAACA................................... len:31 al:3
........................AUGUUUCGGCUUGUUCCCGc.............................................. len:20 al:4
........................AUGUUUCGGCUUGUUCCCGUa............................................. len:21 al:10
........................AUGUUUCGGCUUGUUCCCu............................................... len:19 al:18
........................AUGUUUCGGCUUGUUCCCcU.............................................. len:20 al:3
........................AUGUUUCGGCUUGUUCCCG............................................... len:19 al:46
........................AUGUUUCGGCUUGUUCCCGUU............................................. len:21 al:57
........................AUGUUUCGGCUUGUUCCu................................................ len:18 al:7
........................AUGUUUCGGuUUGUUCCC................................................ len:18 al:1
........................AUGUUUCGGCUUGUUCCCaUU............................................. len:21 al:7
........................gUGUUUCGGCUUGUUCCCGU.............................................. len:20 al:1
........................AUGUUUCGGCUUGUUCCCa............................................... len:19 al:27
........................AUGUUUCGGCUUGUUCCCaUUUU........................................... len:23 al:1
........................AUGUUUCGGCUUGUUCCCuU.............................................. len:20 al:21
........................AUGUUUCGGCUUGUUCCCuUUUU........................................... len:23 al:1
........................AUGUUUCGGCUUGUUCCCGUUUUCGGgAA..................................... len:29 al:1
........................AUGUUUCGGCUUGUUCCCaU.............................................. len:20 al:1
........................AUGUUUCGGCUUGUUCCa................................................ len:18 al:4
........................AUGUUUCGGCUUGUUCCCGUg............................................. len:21 al:1
........................AUGUUUCGGCUUGUUCCC................................................ len:18 al:11
........................AUGUUUCGGCUUGUUCCCGg.............................................. len:20 al:1
........................AUGUUUCGGCUUGUUCCCGUc............................................. len:21 al:11
........................AUGUUUCGGCUUGUUCCCc............................................... len:19 al:3
........................AUGUUUCGGCUUGUUCCCGa.............................................. len:20 al:1
........................AUGUUUCGGCUUGUUCCCuUUU............................................ len:22 al:1
........................AUGUUUCGGCUUGcUCCCGUU............................................. len:21 al:2
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgAAC.................................... len:29 al:1
.........................UGUUUCGGCUUGUUCCCaUU............................................. len:20 al:2
.........................UGUUUCGGCUUGUUCCCGUc............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAACu................................... len:30 al:2
.........................UGUUUCGGCUUGUUCCCGUU............................................. len:20 al:7
.........................UGUUUCGGCUUGUUCCCGUUUUCGGUAACA................................... len:30 al:3
.........................UGUUUCGGCUUGUUCCCGUa............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCa............................................... len:18 al:5
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgAACA................................... len:30 al:8
.........................UGUUUCGGCUUGUUCCCuUU............................................. len:20 al:4
.........................UGUUUCGGCUUGUUCCCGU.............................................. len:19 al:1
.........................UGUUUCGGCUUGUUCCCaU.............................................. len:19 al:1
.........................UGUUUCGGCUUGUUCCCGUUUUCGGgAA..................................... len:28 al:1
..........................GUUUCGGCUUGUUCCCGUUUUCGu........................................ len:24 al:1
..........................GUUUCGGCUUGUUCCCGU.............................................. len:18 al:1
...........................UUUCGGCUUGUUCCCGUUUUCGGgAA..................................... len:26 al:10
.................................................GUAACAAGCCGAAGCAUUUAU.................... len:21 al:5
.................................................GUAACgAGCCGAAGCAUUU...................... len:19 al:1
.................................................GUAACAAGCCGAAGCAUU....................... len:18 al:3
.................................................GUAACAAGCCGAAGCAUUUu..................... len:20 al:1
.................................................GUAACAAGCCGAAGCAcUU...................... len:19 al:1
.................................................GUAACAAGCCGAAGCAUUU...................... len:19 al:7
.................................................GUAACAAGCCGAAGCAUUUA..................... len:20 al:11
.................................................GUAACAAGCCGAAGCAUUUAUu................... len:22 al:1
.................................................GUAACAAGCCGAAGCAUUUAa.................... len:21 al:11