Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000031l:5461305-5461397 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_17776.ps.pdf
Locus Name: Cluster_17776
UUGAAUUGUCUGUGGCCUUCACGGCACCCCUUGCUAGAGUUAUUUAAUAACGCUAGGAAGGGAUGCCGGGAAGGAGAUGGUACAACUCAAAAU
((((.((((((((..(((((.(((((.(((((.((((.(((((...))))).)))).))))).))))).)))))..)))).)))).))))... (-44.70)
....................ACGGCACCCCUUGCUgGAGUUA................................................... len:22 al:4
....................ACGGCACCCCUcGCUAGAGUUA................................................... len:22 al:1
....................ACGGCACCCCUUGCUAGAGUUA................................................... len:22 al:3
....................ACGGCACCCCUUGCUAGAGUU.................................................... len:21 al:1
....................ACGGCACCCCUUGCUAGAGU..................................................... len:20 al:1
.................................................ACGCUAGGAAGGGAUGCCGaG....................... len:21 al:1
.................................................ACGCUAGGAAGGaAUGCCGGGA...................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGa....................... len:21 al:1
.................................................ACGCUAGGAAGGGAUGCuGGGA...................... len:22 al:1
.................................................ACGCUAGGgAGGGAUGCCGGGA...................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCa......................... len:19 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGAu..................... len:23 al:15
.................................................ACGCUAGGAAGGGAUGCCGG........................ len:20 al:1
.................................................ACGCUAGGAAGGGAUGCg.......................... len:18 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGA...................... len:22 al:84
.................................................ACGCUAGGAAGGGAUGCCGGGAA..................... len:23 al:3
.................................................ACGCUAGGAAGGGAUGCCG......................... len:19 al:2
.................................................gCGCUAGGAAGGGAUGCCGGGA...................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCaGGA...................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGu...................... len:22 al:5
.................................................ACGCUAGuAAGGGAUGCCGGGA...................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGg...................... len:22 al:2
.................................................ACaCUAGGAAGGGAUGCCGGGA...................... len:22 al:3
.................................................ACGCUAGGAAGGGgUGCCGGGA...................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCc......................... len:19 al:1
.................................................ACGCUAGGAAGGGAUGCCGGG....................... len:21 al:10
.................................................ACGCUAGGAAGGGAUGCCGGGAAu.................... len:24 al:1
.................................................ACGCUAGGAAGGGAUGCCGGcA...................... len:22 al:1