Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000026l:8745540-8745635 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_16409.ps.pdf
Locus Name: Cluster_16409
CCAGGCUCUCAGUAUCACAUGGUAGAAGUCCUCAAUCACCCUCUUUACGCAGUGUGAUUGGAGACUUUUAUCGUGGCCUGAGUGCACUUUUCUGCC
..((((.(((((...(.(((((((((((((.((((((((.((........)).)))))))).)))))))))))))).))))).)).))........ (-36.90)
...................UGGUAGAAGUCCUCAAUCACCCU...................................................... len:23 al:4
....................GGUAGAAGUCCcCAAUCACCCU...................................................... len:22 al:1
...........................................UUUACGCAGUGUGAUUGGAGACUUUUAUCGU...................... len:31 al:1
................................................GCAGUGUGAUUGGAGACUUUUAUCGU...................... len:26 al:1
.................................................CAGUGUGAUUGGAGACUUUUAUCGU...................... len:25 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUGc.................... len:24 al:1
....................................................UGUGAUUGGAGACUUUUAUaGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUa........................ len:20 al:4
....................................................UGUGAUUGGAGACcUUUAU......................... len:19 al:1
....................................................UGUGAUUGGAGACUUcUAUCGU...................... len:22 al:5
....................................................UGUGAUUGGAGACUUUUAUCGg...................... len:22 al:40
....................................................UGUGAUUGGAGACUcUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGAGACUUUUAUCuU...................... len:22 al:2
....................................................UGUGAUUGGAGACUUUUc.......................... len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUCGa...................... len:22 al:86
....................................................UGUGAUUGaAGACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACcUUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUu.......................... len:18 al:2
....................................................UGUGAUUGGAGACUUUUgUCGU...................... len:22 al:1
....................................................UGUGgUUGGAGACUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUu..................... len:23 al:253
....................................................UGUGAUUGGAGACUUUUAUCa....................... len:21 al:12
....................................................UGUGAUUGGAGACUUUUAUCG....................... len:21 al:25
....................................................UGUGAUUGGAGACUUUUAUCcU...................... len:22 al:27
....................................................UGUGgUUGGAGACUUUUAUCGU...................... len:22 al:9
....................................................UGUGAUUGGAGACUUUUAcCGU...................... len:22 al:3
....................................................UGUGAcUGGAGACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUUUUAUCGcG..................... len:23 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUc..................... len:23 al:38
....................................................UGUGAUUGGAGACUUUUAgCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUC........................ len:20 al:37
....................................................UGUGAUUGGAGACUUUUA.......................... len:18 al:15
....................................................UGUGgUUGGAGACUUUUAUC........................ len:20 al:1
....................................................aGUGAUUGGAGACUUUUAUCGU...................... len:22 al:8
....................................................UGcGAUUGGAGACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUUUUAUCGUG..................... len:23 al:3
....................................................UGUGAUUGGAGACUUUUAUCGUa..................... len:23 al:37
....................................................UGUGAUUGGAGACUUUUAU......................... len:19 al:54
....................................................UGUGAUUGGAGACUUUUAUuGU...................... len:22 al:2
....................................................cGUGAUUGGAGACUUUUA.......................... len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUCGU...................... len:22 al:1690
....................................................cGUGAUUGGAGACUUUUAUCGU...................... len:22 al:11
....................................................UGUGAUUGGAGACcUUUAUCGU...................... len:22 al:8
....................................................UGUGAUcGGAGACUUUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGAGACUUU............................ len:16 al:4
....................................................UGUGAUUGGAGACUUUUAUCGUGu.................... len:24 al:1
....................................................UGUGAUUGGAGACUUaUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGgGACUUUUAUCGU...................... len:22 al:7
....................................................UGUGAUUGGAGgCUUUUAUCGU...................... len:22 al:9
....................................................UuUGAUUGGAGACUUUUAUCGU...................... len:22 al:8
....................................................UaUGAUUGGAGACUUUUAUCGU...................... len:22 al:2
....................................................UGUGAUUGGAGACUUUUAUCGc...................... len:22 al:364
....................................................UGUGAUUGGAGACUUUcAUCGU...................... len:22 al:7
....................................................UGUGAUUaGAGACUUUUAUCGU...................... len:22 al:4
....................................................UGUGAUUGGAGACUUUUuUCGU...................... len:22 al:1
....................................................UGUGAUUGGAGACUcUUAUCG....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUAUCu....................... len:21 al:1
....................................................UGUGAUUGGAGACUUUUAc......................... len:19 al:9
....................................................UGUGAUUGGAGACUUUUuU......................... len:19 al:2
....................................................UGUGAUUGGAGACUUUUAUCaU...................... len:22 al:11
.....................................................GUGAUUGGAGACUUUUAUCGU...................... len:21 al:2
......................................................UGAUUGGAGACUUUUAUCGU...................... len:20 al:1