Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:15156415-15156507 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_15928.ps.pdf
Locus Name: Cluster_15928
CACUGCUUUCAAUAGUUUGGAUUUACCACAUUCAGGAUAGACAUGUUCUAUAUCUAGCCUGAAUGAGGUAAUAUUUAAGCUGUUAAAUUGCAU
...(((....(((((((((((((((((.((((((((.((((.(((...))).)))).)))))))).))))).)))))))))))).....))). (-32.80)
......................UUACCACAUUCAaGAUAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUAG..................................................... len:18 al:4
......................UUACCACAUUCAGGAUAGA.................................................... len:19 al:7
......................UUACCACAcUCAGGAUAGACAU................................................. len:22 al:1
......................UUAuCACAUUCAGGAUAGACAU................................................. len:22 al:2
......................cUACCACAUUCAGGAUAGACA.................................................. len:21 al:3
......................cUACCACAUUCAGGAUAGAC................................................... len:20 al:2
......................UUgCCACAUUCAGGAUAGACAU................................................. len:22 al:2
......................UUACCACAUUCAGGAUAGAu................................................... len:20 al:16
......................UUACCACAUUCAGGAUAGACAUGUUu............................................. len:26 al:1
......................UUACCACAUUCAGGgUAGACA.................................................. len:21 al:4
......................UUACCACAUUCAGGAUAGACAU................................................. len:22 al:616
......................UUACCACAUUCAGGAUAGACAUG................................................ len:23 al:16
......................UUACCgCAUUCAGGAUAGAC................................................... len:20 al:2
......................UUACCACAUUCAGGAUAGACAUGUUCc............................................ len:27 al:1
......................UUACCACgUUCAGGAUAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUcGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGAgA.................................................. len:21 al:1
......................UUAaCACAUUCAGGAUAGACA.................................................. len:21 al:2
......................UUACuACAUUCAGGAUAGACAU................................................. len:22 al:1
......................aUACCACAUUCAGGAUAGA.................................................... len:19 al:1
......................UUACCACAUUCAGGAUAGACAUGUU.............................................. len:25 al:2
......................UUACuACAUUCAGGAUAGACA.................................................. len:21 al:2
......................UUACCACAUUCAGGAUAGACc.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGACgU................................................. len:22 al:10
......................UUACCACAUUCAGGAUAGACAUu................................................ len:23 al:47
......................UUACCACAUUCAGGAUAGACu.................................................. len:21 al:20
......................aUACCACAUUCAGGAUAGACAU................................................. len:22 al:3
......................UUcCCACAUUCAGGAUAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCU............................................ len:27 al:2
......................UUACCACAUUCAGGAcAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCa............................................ len:27 al:6
......................UUACCACAUcCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGuUAGACAU................................................. len:22 al:1
......................UUACCACgUUCAGGAUAGACAU................................................. len:22 al:1
......................UUACCACgUUCAGGAUAGACA.................................................. len:21 al:2
......................UUACCACAUUCAaGAUAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGgCAU................................................. len:22 al:4
......................UUACCACAUUCgGGAUAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUAGACAUGUUCg............................................ len:27 al:1
......................UUACCACAcUCAGGAUAGACA.................................................. len:21 al:1
......................cUACCACAUUCAGGAUAGACAU................................................. len:22 al:3
......................UUACCACAUUCAGGAUAGAg................................................... len:20 al:1
......................UUACCACAUUCAGGAUAGACAUc................................................ len:23 al:6
......................UUACCACAUUCAGGAUAGACg.................................................. len:21 al:11
......................UUACCuCAUUCAGGAUAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAcAGACAU................................................. len:22 al:1
......................UUACCACAUcCAGGAUAGACAU................................................. len:22 al:1
......................UUACCACAUUCAGGAUAGACAUGUUC............................................. len:26 al:6
......................UUACCACAUUCAGGAUAGgCA.................................................. len:21 al:4
......................UUACCACAUUCAGGAUAGACAg................................................. len:22 al:7
......................UUACCACAUUCAGGAUAGACA.................................................. len:21 al:362
......................UUACCACAUUCAGGAUgGAC................................................... len:20 al:1
......................UUACCgCAUUCAGGAUAGACA.................................................. len:21 al:3
......................UcACCACAUUCAGGAUAGACAU................................................. len:22 al:3
......................UcACCACAUUCAGGAUAGACA.................................................. len:21 al:4
......................UUACCACAUUCgGGAUAGACAU................................................. len:22 al:3
......................UUACCACAcUCAGGAUAGAC................................................... len:20 al:1
......................UUACCACAUUCAGGAUAGACAUa................................................ len:23 al:16
......................UUACCACAUUCuGGAUAGACA.................................................. len:21 al:2
......................UUACCACAUUCAGGAUAGAC................................................... len:20 al:134
......................UUACCACAUUCAGGAUAGcCA.................................................. len:21 al:4
......................UUACCACAUUCAGGAUAGAa................................................... len:20 al:3
......................UUACCACAUUCAGGAcAGACA.................................................. len:21 al:1
......................UUACCACAUUCAGGAUAGAuA.................................................. len:21 al:2
......................UUACCgCAUUCAGGAUAGACAU................................................. len:22 al:1
......................UUACCuCAUUCAGGAUAGACAUG................................................ len:23 al:2
.......................UACCACAUUCAGGAUAGACAUG................................................ len:22 al:1
.......................UACCACAUUCAGGAUAGACA.................................................. len:20 al:3
.......................UACCACAUUCAGGAUAGACAUu................................................ len:22 al:4
.......................UACCACAUUCAGGAUAGAC................................................... len:19 al:1
.......................UACCACAUUCAGGAUAGACAUGUU.............................................. len:24 al:1
.......................UACCACAUUCAGGAUAGACAU................................................. len:21 al:2
........................ACCACAUUCAGGAUAGACAUGUUCUAUAUCc...................................... len:31 al:1
..........................CACAUUCAGGAUAGACAU................................................. len:18 al:2
..........................CACAUUCAGGAUAGACAUa................................................ len:19 al:1
.........................................CAUGUUCUAUAUCUAGCCUGu............................... len:21 al:1
..........................................AUGUUCUAUAUCUAGCCUGu............................... len:20 al:1
.................................................AUAUCUAGCCUGAAUGcGGUAAU..................... len:23 al:2
...................................................AUCUAGCCUGAAUGAGGUAAUA.................... len:22 al:1
...................................................AUCUAGCCUGAgUGAGGUAAU..................... len:21 al:1