Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:10668901-10668998 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_15854.ps.pdf
Locus Name: Cluster_15854
GUCUGAUACAUUUUACGAGAUGUUUUUUCGUAACAGCUUCAUAAAUUGAAUUAUAAAGCUUUUGUGAAGAAACACGUUGUGAAAUUUACUUCCAUCAG
..(((((..(((((((((..(((((((((((((.(((((.((((......)))).))))).)))))))))))))..)))))))))........))))) (-26.40)
....................UGUUUUUUCGUAACAGCUUCAUAAAUUGA................................................. len:29 al:1
....................UGUUUUUUCGUAACAGCUUCAUA....................................................... len:23 al:4
....................UGUUUUUUCGUAACAGCUUCAUu....................................................... len:23 al:1
....................UGUUUUUUCGUAACAGCUUCAU........................................................ len:22 al:4
....................UGUUUUUUCGUAACAGCUUCAUAu...................................................... len:24 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACa...................... len:23 al:52
.....................................................UAAAGCUUUUGUGAAGAgACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACGc..................... len:24 al:2
.....................................................UAAAGCUUUUGaGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACc...................... len:23 al:4
.....................................................UAAAGCUUUUGUGAAGAAAC......................... len:20 al:8
.....................................................UAAAGCUUUUGUGAAGAAACAC....................... len:22 al:1
.....................................................UAAAGCUUUUGUGAAGuAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAAaACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACu...................... len:23 al:12
.....................................................UAAAGCUUUUGUGAAGAAACA........................ len:21 al:5
.....................................................UAAAGCUUUUGUGAAGAAACACG...................... len:23 al:94
.....................................................UAgAGCUUUUGUGAAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAA.......................... len:19 al:2
.....................................................UAAAGCUUUUGUGAAGAAACACGU..................... len:24 al:23
.....................................................UAAAGCUUUUGUGAAGAAACACGa..................... len:24 al:5
.....................................................UAAAGCUUUUGUGAAGAAACgCG...................... len:23 al:4
.....................................................UAAAGCUUUUGUGgAGAAACACG...................... len:23 al:1
.....................................................UAAAGCUUUUGUGAAGAAACACGg..................... len:24 al:1
......................................................AAAGCUUUUGUGAAGAAACACG...................... len:22 al:2