Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:10501030-10501125 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_15851.ps.pdf
Locus Name: Cluster_15851
AUUAUAUGAGAUGCAGUAUGAUAUUGAUGAGCACAACAAAAGGUCUAUAGGCACUUUUUGUGAUGUUCGUCAAUAUCAGAUUUCAUCCAUUAUGCA
.....(((.((((.(((.(((((((((((((((..(((((((((((...)).)))))))))..))))))))))))))).))).)))))))...... (-36.20)
...AUAUGAGAUGCAGUAUGAU.......................................................................... len:19 al:1
....UAUGAGAUGCAGUAUGgU.......................................................................... len:18 al:1
......................AUUGAUGAGCACAACAAAAGa..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAAAGGc.................................................... len:22 al:27
......................AUUGgUGAGCACAACAAAAGGU.................................................... len:22 al:3
......................gUUGAUGAGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAGGa.................................................... len:22 al:5
......................gUUGAUGAGCACAACAAA........................................................ len:18 al:1
......................AUUGAUGAGCACAACAAAAGGUuU.................................................. len:24 al:1
......................AUUGAUGAGCACAACAAAA....................................................... len:19 al:2
......................AUUGAUGAGCACAACAAAAGGU.................................................... len:22 al:143
......................AUUGAUGAGCACAACAAAAG...................................................... len:20 al:1
......................AUUGAUGAGCACAACAAAAGGg.................................................... len:22 al:3
......................AcUGAUGAGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAGGUu................................................... len:23 al:9
......................AUUGAUGAGCACAACAAAAGG..................................................... len:21 al:5
......................AUUGAUGAGCACAACAAAgGG..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAA........................................................ len:18 al:4
......................AUUGAUGAGCACAACAAAgGGU.................................................... len:22 al:8
......................AUUGAUGAGCACAACAAAAGGUa................................................... len:23 al:3
......................AUUGAUGAGCACAACAAAAGcU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAGGUC................................................... len:23 al:1
.......................UUGAUGAGCACAACAAAAGGU.................................................... len:21 al:3
.......................UUGAUGAGCACAACAAAAGc..................................................... len:20 al:1
.......................UUGAUGAGCACAACAAAAGGa.................................................... len:21 al:1
.......................UUGAUGAGCACAACAAAAGGc.................................................... len:21 al:1
........................UGAUGAGCACAACAAAAGGU.................................................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAU.................... len:22 al:41
......................................................UUUUUGUGAUGUUCGUCuAUA..................... len:21 al:1
......................................................UUUcUGUGAUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAUa................... len:23 al:3
......................................................UUUUUGUGgUGUUCGUCAAUAU.................... len:22 al:2
......................................................UUUUUGUGAUGUUCGUCgAU...................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCAAc...................... len:20 al:7
......................................................UUUUUGUGAUGUUCGUu......................... len:17 al:1
......................................................UUUUUGUGAUGUUCG........................... len:15 al:1
......................................................UUUUUGUGAUGUUCGUCAAcA..................... len:21 al:1
......................................................UUUUUGUGAUGUUCGUCAAUAc.................... len:22 al:3
......................................................UUUUUGUGAUGUUCGUCAAUAUu................... len:23 al:20
......................................................UUUUUGUGAUGUUCGUCAAUAUC................... len:23 al:6
......................................................UUUUUGUGAUGUUCGUCAAUAa.................... len:22 al:2
......................................................UUUUUGcGAUGUUCGUCA........................ len:18 al:1
......................................................UUUUUGUGAUGUUCGUCAAUA..................... len:21 al:38
......................................................UUUUUGUGAUGUUCGUCgAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAAU...................... len:20 al:23
......................................................UUUUUGUGAUGUUCGUCAAa...................... len:20 al:1
......................................................UUUUUGUGgUGUUCGUCAAUA..................... len:21 al:1
......................................................UcUUUGUGAUGUUCGUCA........................ len:18 al:2
......................................................UUUUUGUGAUGgUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCA........................ len:18 al:6
......................................................UUUUUGUGAUGUUCGUCAAaA..................... len:21 al:1
.......................................................UUUUGUGAUGUUCGUCAAU...................... len:19 al:1