Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000025l:1981692-1981783 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_15671.ps.pdf
Locus Name: Cluster_15671
UUCAAUAAUGCCACUAAAUGUCUAUAAAGUACUAAUCAACAUUUUAAAAUAUUGAUUAGUACUUGAUAGACAUUUAGUGGUAUUCCUGAAUG
((((..(((((((((((((((((((.(((((((((((((.(((....))).))))))))))))).)))))))))))))))))))..)))).. (-46.10)
....................UCUAUAAAGUACUAAUCAACAUa................................................. len:23 al:1
....................UCUAUAAAuUACUAAUCAACAUU................................................. len:23 al:1
....................UaUAUAAAGUACUAAUCAACAUU................................................. len:23 al:1
....................UCUAUAAAGUACUAAUCAACAUUU................................................ len:24 al:7
....................UCUAUAAAGUACUAAUCAACAUUc................................................ len:24 al:2
....................UCUAUAAAGUACUAAUCAACAUc................................................. len:23 al:2
....................UCUAUAAAGUACUAAUCAAC.................................................... len:20 al:1
....................UCUAUAAAGUACUAAUCAACAUU................................................. len:23 al:57
....................UCUAUAAAGUACUAAUCA...................................................... len:18 al:1
....................UCUAUAAAGUACUAAUCAACAUg................................................. len:23 al:1
....................UCUAUAAAGUACUAAUCAACAU.................................................. len:22 al:3
....................UCUAUAAAGUACUAAUCAACAc.................................................. len:22 al:2
.....................CUAUAAAGUACUAAUCAACAUU................................................. len:22 al:2
...........................................UUAAAAUAUUGAUUgGUACUUGAUAGACA.................... len:29 al:2
..............................................AAAUAUUGAUUAGUACUUGAUAGACA.................... len:26 al:2
.................................................UAUUGAUUAGUAuUUGAUAGACAUU.................. len:25 al:1
.................................................UAUUGAUUAaUACUUGAUAGACA.................... len:23 al:3
.................................................UAUUGAUUAGUACUUGAUAGACAg................... len:24 al:1
.................................................UAUUGAUUgGUACUUGAU......................... len:18 al:2
.................................................UgUUGAUUAGUACUUGAUAGACA.................... len:23 al:1
.................................................UAUUGAUUAGUACUUGAUAGuC..................... len:22 al:1
.................................................UAUUGAUUAGUACUUGAUAGg...................... len:21 al:1
.................................................UAUUGAUUAGUACUUGAUAGACAUUU................. len:26 al:1
.................................................UAUUGAUUuGUACUUGAUAGACA.................... len:23 al:1
.................................................UAUUGAUUAGUACUUGAUAGA...................... len:21 al:6
.................................................UAUUGAUUgGUACUUGAUAGAC..................... len:22 al:5
.................................................UAUUGAUUAGUACUUGAcA........................ len:19 al:1
.................................................UAUUGAUUAGUACUUGAcAGACA.................... len:23 al:1
.................................................UAUUGAUUAGUACUUGAU......................... len:18 al:72
.................................................UAcUGAUUAGUACUUGAUAGAC..................... len:22 al:1
.................................................UAUUGAUUAGUACUUGAUAGACAUUg................. len:26 al:1
.................................................UAUUGAUUAGUACUUGAUAGACAc................... len:24 al:1
.................................................UAcUGAUUAGUACUUGAUAGACA.................... len:23 al:1
.................................................cAUUGAUUAGUACUUGAUAGACA.................... len:23 al:2
.................................................UAUUGAUUAuUACUUGAUAGACA.................... len:23 al:2
.................................................UAUUGAUUAGUACUUGAUAGAC..................... len:22 al:35
.................................................UAUUGAUUAGUgCUUGAUAGACA.................... len:23 al:2
.................................................UAUUGAUUAGUACUUGAUgGACA.................... len:23 al:1
.................................................UAUUGAUUAGUACUUGAUAGAa..................... len:22 al:2
.................................................UAUUGAUUAGUACUUGgUAGACA.................... len:23 al:6
.................................................UAUUGAUUAGUACUUGAUAGACAUU.................. len:25 al:2
.................................................UAUUGAUUAGUACUUGAUAGgCA.................... len:23 al:2
.................................................UAUUGAUUAGUACUUGAUAGACg.................... len:23 al:11
.................................................UAUUGAUUAGUACUUGAc......................... len:18 al:12
.................................................UAUUGAUUAGUACUUGAUuGAC..................... len:22 al:1
.................................................UAUUGAUUAGUACUUGAUAGACA.................... len:23 al:315
.................................................UAUUGAUUAGUACUcGAUAGACA.................... len:23 al:1
.................................................UAUUGAUUAGUACUUGAUAGcCA.................... len:23 al:3
.................................................UAUUGAUUgGUACUUGAUAGACA.................... len:23 al:13
.................................................UAUUGAUUAGUACcUGAUAGACA.................... len:23 al:1
.................................................UAUUGAUUAGUACUUGAUAGACc.................... len:23 al:4
.................................................UAUUGAUUAGUACUUGAUAGAu..................... len:22 al:4
.................................................UAUUGAUUAGUACUUGAUAGAuA.................... len:23 al:2
.................................................UAUUGAUUAGUACUUGAUAGACAU................... len:24 al:14
.................................................UAUcGAUUAGUACUUGAUAGACA.................... len:23 al:2
.................................................UAUUGAUUgGUACUUGAUAGA...................... len:21 al:1
.................................................UAUUGAUUAGUACUcGAUAGAC..................... len:22 al:1
.................................................UAUUGAUUAGUACUUGAUAGACu.................... len:23 al:23
..................................................AUUGAUUgGUACUUGAUAGACA.................... len:22 al:5
..................................................AUUGAUUAGUACUUGAUAGACAc................... len:23 al:1
..................................................AUcGAUUAGUACUUGAUAGACA.................... len:22 al:1
..................................................AUUGAUUgGUACUUGAUAGAC..................... len:21 al:1
..................................................AUUGAUUAGUACUUGAUAGACA.................... len:22 al:111
..................................................AUUGAUUAGUACUUGAUAGAu..................... len:21 al:1
..................................................AUUGAUUAGUACUUGAUAGACgU................... len:23 al:1
..................................................AUUGAUUAGUACUUGAUAGACAUUU................. len:25 al:1
..................................................AUUGAcUAGUACUUGAUAGACA.................... len:22 al:1
..................................................AUUGAUUAGUACUUGAUAGACg.................... len:22 al:2
..................................................AUUGAUUAGcACUUGAUAGACAU................... len:23 al:1
..................................................AUUGAUUAGUACUUGAUAGAC..................... len:21 al:14
..................................................AUUGAUUAGUACUUGAUAGgCA.................... len:22 al:1
..................................................AUUGgUUAGUACUUGAUAGACA.................... len:22 al:1
..................................................AUUGAUUAGUACUUGAUAGACAU................... len:23 al:8
..................................................AUUGAUUAGUACUUGAUAGACu.................... len:22 al:5
...................................................UUGAUUAGUACUUGAUAGACA.................... len:21 al:5
...................................................UUGAUUAGUACUUGAUAGACAUUU................. len:24 al:2
...................................................UUGAUUAGUACUUGAUAGACAUc.................. len:23 al:2
...................................................UUGgUUAGUACUUGAUAGACA.................... len:21 al:1
...................................................UUGgUUAGUACUUGAUAGAC..................... len:20 al:1
...................................................UUGAUUAGUACUUGAUAGAu..................... len:20 al:1
...................................................UUGAUUAGUACUUGAUAGACAU................... len:22 al:4
...................................................UUGAUUAGUACUUGAUAGAC..................... len:20 al:4
...................................................UUGAUUAGUACUUGAUAGACAc................... len:22 al:1
...................................................UUGAUUAGUACUUGgUAGACA.................... len:21 al:1
...................................................UUGAUUAGUACUUGAUAGACAUU.................. len:23 al:9
...................................................UUGAUUAGUACUUGAUAGAa..................... len:20 al:1
....................................................UGAUUAGUACUUGAUAGAu..................... len:19 al:1