Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000024l:5256454-5256549 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_15340.ps.pdf
Locus Name: Cluster_15340
GGCAUCUGUGAACUCCAGCCUACAUGUGCUGCACUGGAACUCUUUAGCAAGACAUUCCAUGGCAGCUGUGUGCGCUAGGGCUUCACCUUUUUCAGG
.......(((((.((((((.((((((.(((((..(((((.((((....))))..)))))..))))))))))).))).))).))))).......... (-33.10)
.GCAUCUGUGAACUCCAGCu............................................................................ len:19 al:1
.GCAUCUGUGAACUCCAGCa............................................................................ len:19 al:2
.GCAUCUGUGAACUCCAGCC............................................................................ len:19 al:5
..CAUCUGUGAACUCCAGCC............................................................................ len:18 al:4
..CAUCUGUGAACUCCAGCu............................................................................ len:18 al:1
...................CUACAUGUGCUGCACUGGAACU....................................................... len:22 al:1
...................CUACAUGUGCUGCACUGGAACUCUUUAGCAA.............................................. len:31 al:1
...................CUACAUGUGCUGCACUGGAACUCU..................................................... len:24 al:1
...................CUACAUGUGCUGCACUGGAACUCUc.................................................... len:25 al:1
....................UACAUGUGCUGCACUGGAAgU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUUaA.................................................. len:26 al:1
....................UACAUGUGCUGCACUGGAACUCUa.................................................... len:24 al:115
....................UACAUGUGCUGCACUGGgACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUGGAgCUCUU.................................................... len:24 al:4
....................UACAUGUGCUGCACUGGAcCUC...................................................... len:22 al:1
....................UACAUGUGCUGCgCUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCgCUGGAACUCU..................................................... len:23 al:17
....................UAuAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGuACUGGAACUCU..................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACUuU..................................................... len:23 al:9
....................cACAUGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGuACU....................................................... len:21 al:4
....................UgCAUGUGCUGCACUGGAACUCU..................................................... len:23 al:16
....................UACAUGUGCUGCACUGGgACUCU..................................................... len:23 al:11
....................UACAUGUGCaGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCuCUGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACgCU..................................................... len:23 al:7
....................UgCAUGUGCUGCACUGGAACU....................................................... len:21 al:6
....................UACAUGUGCUGCACUGGAgCU....................................................... len:21 al:8
....................cACAUGUGCUGCACUGGAACU....................................................... len:21 al:4
....................UACAUGUcCUGCACUGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAAuUCU..................................................... len:23 al:5
....................UACAUGUGCUGCACUGGAuCUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAAg........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGAACcC...................................................... len:22 al:7
....................UACAUGUGCUGCACUGGAACUCUUU................................................... len:25 al:86
....................UACAUGUGCUGuACUGGAACU....................................................... len:21 al:2
....................UACAUGUGCUGCACUaGAACUC...................................................... len:22 al:1
....................UACAcGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:2505
....................UACAUGUGCcGCACUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAgCUC...................................................... len:22 al:3
....................UACAUGUGCUGCACUGGAACUCgU.................................................... len:24 al:1
....................UACAUaUGCUGCACUGGAACUCU..................................................... len:23 al:1
....................UACuUGUGCUGCACUGGAACUCU..................................................... len:23 al:3
....................UgCAUGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGAACUCUcU................................................... len:25 al:2
....................UcCAUGUGCUGCACUGGAACU....................................................... len:21 al:2
....................UACAUGUGCUGCACUGGAACUa...................................................... len:22 al:24
....................UACAUGUGCUGCACUGGAACc....................................................... len:21 al:141
....................UcCAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUGGAACUaU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAAuU....................................................... len:21 al:2
....................UACAUGUGCUGCACUGGAAC........................................................ len:20 al:48
....................UACAcGUGCUGCACUGGAACU....................................................... len:21 al:4
....................UACAUGUGCUGCACUGGAAa........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGAACUCa..................................................... len:23 al:594
....................UACAUGUGCUGCACUGGAACcCUU.................................................... len:24 al:3
....................UACAUGUGCUGCACUGGuACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCUUUAc................................................. len:27 al:1
....................UACAUGUGCUGCACUaGAACU....................................................... len:21 al:3
....................UACAUGUGCUGCACUGGgACU....................................................... len:21 al:6
....................UACAUGcGCUGCACUGGAACUCUU.................................................... len:24 al:2
....................UAuAUGUGCUGCACUGGAACUCU..................................................... len:23 al:5
....................UACAUGUGCUGCACUGGAACU....................................................... len:21 al:745
....................UACAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:285
....................UACAUGUGCUGCACUGGAgCUCU..................................................... len:23 al:9
....................UACAUGUGCUGCACUGGAACUCUUa................................................... len:25 al:23
....................UACAUGaGCUGCACUGGAACUCU..................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACcCU..................................................... len:23 al:41
....................UACAUGUGCUGCACUGGAACUCUUUAGCA............................................... len:29 al:1
....................UACAcGUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UACgUGUGCUGCACUGGAACU....................................................... len:21 al:6
....................UACAUGUGCUGCACUGGAA......................................................... len:19 al:13
....................UACAUGUGuUGCACUGGAACUCU..................................................... len:23 al:3
....................gACAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUGGAACaCU..................................................... len:23 al:1
....................UuCAUGUGCUGCACUGGAACUC...................................................... len:22 al:3
....................UACAUGUGCUGCACUGGAACgC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAcCUCU..................................................... len:23 al:1
....................UACAUGUGCcGCACUGGAACUCU..................................................... len:23 al:10
....................UACAUGUGCUGCACUGGAACUCUc.................................................... len:24 al:47
....................UACAUGUGCUGCgCUGGA.......................................................... len:18 al:1
....................UuCAUGUGCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUCaUU................................................... len:25 al:29
....................UcCAUGUGCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGcGCUGCACUGGAACU....................................................... len:21 al:3
....................UACAUGUGCUGCACUGGAACUCUUUA.................................................. len:26 al:10
....................UACAUGUGCUGCACUGGAACa....................................................... len:21 al:146
....................UACAUGUGCUGCACUGGAACUCUUUu.................................................. len:26 al:25
....................UACAUGUGCUaCACUGGAACUCU..................................................... len:23 al:4
....................UACgUGUGCUGCACUGGAACUCUU.................................................... len:24 al:2
....................UACAUGUGCUGCACUGGA.......................................................... len:18 al:39
....................UACAUGUGCUGCACaGGAACUCU..................................................... len:23 al:4
....................UACAUGUGCUGCgCUGGAACUCUU.................................................... len:24 al:2
....................UACAgGUGCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUCUUUAGC................................................ len:28 al:11
....................UACAUGUGCUGCgCUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACaGGAACUCUUU................................................... len:25 al:2
....................UACAUGUGCUGCACUaGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUu...................................................... len:22 al:45
....................UACAUGUGCUGCACcGGAACUCUU.................................................... len:24 al:1
....................UgCAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:2
....................UACAUGUGCUGCACUaGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUGGAACUC...................................................... len:22 al:193
....................UACAUGUGCUGCACUGGAACUCg..................................................... len:23 al:72
....................UACAUGcGCUGCACUGGAACUCU..................................................... len:23 al:16
....................UACAUGUGCcGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUg.................................................... len:24 al:4
....................cACAUGUGCUGCACUGGAACUCUU.................................................... len:24 al:1
....................UACAUGUGCUGCACUGGAACUCc..................................................... len:23 al:530
....................UACAUGUGCUGCAuUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCAuUGGAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCUUUAGu................................................ len:28 al:4
....................cACAUGUGCUGCACUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCUUc................................................... len:25 al:10
....................UACAUGUGCUGCACUGGAACUCaU.................................................... len:24 al:87
....................UACgUGUGCUGCACUGGAACUCU..................................................... len:23 al:9
....................UACAUGUGCUGCACUGGAACg....................................................... len:21 al:26
....................UACAUGUGCUGCACUGGu.......................................................... len:18 al:3
....................UACAUGUGCcGCACUGGAA......................................................... len:19 al:1
....................UACAUGUGCUGCACUGGAACUCUaU................................................... len:25 al:71
....................UACAUGUGCUGCACcGGAACUCU..................................................... len:23 al:8
....................UACAUGUGCUGCACUGGAg......................................................... len:19 al:1
....................UACAaGUGCUGCACUGGAACUCUUU................................................... len:25 al:1
....................UACAUGUGCUGCgCUGGAACU....................................................... len:21 al:3
....................UACAUGUGCUGCACUuGAACU....................................................... len:21 al:1
....................UACAUGcGCUGCACUGGA.......................................................... len:18 al:2
....................UACAUGUaCUGCACUGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACUGaAACUCU..................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAc......................................................... len:19 al:1
....................UACuUGUGCUGCACUGGAACU....................................................... len:21 al:3
....................UACAcGUGCUGCACUGGAACUCU..................................................... len:23 al:6
....................UACAUGUGCUGCACUGGAACgCUU.................................................... len:24 al:3
....................UACAUGUGCUGCACUGaA.......................................................... len:18 al:1
....................UACAUGUGCUGCACcGGAACUCUUU................................................... len:25 al:1
....................UACAUGUGCUGCACUGaAACUCUU.................................................... len:24 al:1
....................UuCAUGUGCUGCACUGGAAC........................................................ len:20 al:1
....................UACAUGUGCUGCACUGGAu......................................................... len:19 al:3
....................UACAUGUGCUGCACUGGAACUCcU.................................................... len:24 al:10
....................UACAUGUGCUGCACUGGAACUgU..................................................... len:23 al:1
....................UACAUGUaCUGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCAuUGGAACUC...................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAAu........................................................ len:20 al:11
....................UACAUGUGCUGCACgGGAACUCU..................................................... len:23 al:2
....................UACAUGUGCUGCACU............................................................. len:15 al:1
....................aACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:4
....................UACAUGUGCUGCACUGGAACUCUUUAGCAA.............................................. len:30 al:1
....................cACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:12
....................UACAUGUGCUGCACUGGAACUCUaUA.................................................. len:26 al:16
....................UACAUGUGCUGuACUGGAACUCUU.................................................... len:24 al:2
....................gACAUGUGCUGCACUGGAACUCU..................................................... len:23 al:6
....................UACAUGUGCcGCACUGGA.......................................................... len:18 al:1
....................UACcUGUGCUGCACUGGAACU....................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCaUUA.................................................. len:26 al:1
.....................ACAUGUGCUGCACUGGAACc....................................................... len:20 al:1
.....................ACAUGUGCUGCACUGGAACUCU..................................................... len:22 al:10
.....................ACAUGUGCUGCACUGGAACcCU..................................................... len:22 al:1
.....................ACAUGUGCUGCACUGGAACUC...................................................... len:21 al:1
.....................ACAUGUGCUGCACUGGAACUCUU.................................................... len:23 al:1
.....................ACAUGUGCUGCACUGGAACUCaU.................................................... len:23 al:2
.....................ACAUGUGCUGCACUGGAACUa...................................................... len:21 al:1
.....................ACAUGUGCUGCACUGGAACUCc..................................................... len:22 al:1
.....................ACAUGUGCUGCACUGGAACUCUc.................................................... len:23 al:1
.......................AUGUGCUGCACUGGAACUCUU.................................................... len:21 al:1
.......................AUGUGCUGCACUGGAACUCU..................................................... len:20 al:3
.......................AUGUGCaGCACUGGAACUCUUU................................................... len:22 al:1
.......................AUGUGCUGCACUGGAACc....................................................... len:18 al:1
........................UGUGCUGCACUGGAACUC...................................................... len:18 al:1
........................UGUGCUGCACUGGAACUu...................................................... len:18 al:1
........................UGUGCUGCACUGGAACUCU..................................................... len:19 al:19
........................UGUGCUGCACUGGAACUCc..................................................... len:19 al:3
........................UGUGCUGCACUGGAACUCUUc................................................... len:21 al:1
........................UGUGCUGCACUGGAACUCa..................................................... len:19 al:1
........................UGUGCUGCACUGGAACUCUUUc.................................................. len:22 al:2
........................UGUGCUGCACUGGAACUCg..................................................... len:19 al:1
........................UGUGCUGCACUGGAACUCUa.................................................... len:20 al:3
........................UGUGCUGCACUGGAACUCUU.................................................... len:20 al:5
........................UGUGCUGCACUGGAACcCU..................................................... len:19 al:4
.........................GUGCUGCACUGGAACUCaU.................................................... len:19 al:1
..........................................UUUAGCAAGACAUUCCAUGGCAGCUGUGUGu....................... len:31 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCu...................... len:31 al:2
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCG...................... len:31 al:42
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCc...................... len:31 al:6
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGU......................... len:28 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGu....................... len:30 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGC....................... len:30 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUG........................ len:29 al:1
...........................................UUAGCAAGACAUUCCAUGGCAGCUGUGUGCa...................... len:31 al:22
...................................................ACAUUCCAUGGCAGCUGUGUGCGu..................... len:24 al:14
...................................................ACAUUCCAUGGCAGCUGUGUGCu...................... len:23 al:12
...................................................ACAUUCCAUGGCAGCUGUGUGCc...................... len:23 al:5
...................................................ACAUUCCAUGGCAGCUGUGUG........................ len:21 al:2
...................................................ACAUUCCAUGGCAGCUGUGUGu....................... len:22 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGC....................... len:22 al:7
...................................................gCAUUCCAUGGCAGCUGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGg..................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGaU.................... len:25 al:3
...................................................ACAUUCCAUGGCAGCUGUGUGCuC..................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCa...................... len:23 al:36
...................................................ACAUUCCAUGGCAGCUGUGUGCGC..................... len:24 al:3
...................................................ACuUUCCAUGGCAGCUGUGUGCG...................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGuU.................... len:25 al:1
...................................................ACAUUCCAUGGCAGCUGUGUa........................ len:21 al:2
...................................................ACAUUCCAUGGCAGCUGUGUGCG...................... len:23 al:51
....................................................gAUUCCAUGGCAGCUGUGUGCG...................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUa........................ len:20 al:3
....................................................CAUUCCAUGGCAGCUGUGUG........................ len:20 al:23
....................................................CAUUCCAUGGCAGCUGUGUGCGu..................... len:23 al:17
....................................................CAUUCCAUGGCgGCUGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCc...................... len:22 al:10
....................................................CAcUCCAUGGCAGCUGUGUGCG...................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGCu...................... len:22 al:26
....................................................uAUUCCAUGGCAGCUGUGUGCG...................... len:22 al:1
....................................................gAUUCCAUGGCAGCUGUGUG........................ len:20 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGa..................... len:23 al:1
....................................................CAUUCCAUGGCAGCUGUGUGu....................... len:21 al:13
....................................................CAUUCCAcGGCAGCUGUGUGCG...................... len:22 al:1
....................................................gAUUCCAUGGCAGCUGUGUGC....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCa...................... len:22 al:157
....................................................uAUUCCAUGGCAGCUGUGUGC....................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGU......................... len:19 al:3
....................................................uAUUCCAUGGCAGCUGUGUGCGC..................... len:23 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGC..................... len:23 al:1
....................................................CgUUCCAUGGCAGCUGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGa....................... len:21 al:7
....................................................CAUUCCAUGGCAGCUGUGUGC....................... len:21 al:15
....................................................CAUUCCAUGGCAGCaGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCcGUGUGCG...................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGg....................... len:21 al:1
....................................................CAUcCCAUGGCAGCUGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGgG...................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCG...................... len:22 al:257
....................................................CAUUCCAUGGCAGCUGUGUGuG...................... len:22 al:1
....................................................CAUUCCAUGcCAGCUGUGUGCG...................... len:22 al:1
....................................................CAUUCCAUGGuAGCUGUGUGCG...................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUG.......................... len:18 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGa..................... len:22 al:1
.....................................................gUUCCAUGGCAGCUGUGUGCG...................... len:21 al:2
.....................................................AUUCCAUGGCAGCUGUGUa........................ len:19 al:6
.....................................................AUUCCAUGGCAGCUGUGUGCGu..................... len:22 al:20
.....................................................AUUCCAUGGCAGCUGUGUGC....................... len:20 al:16
.....................................................AUUCCAUGGCAGCUGUGUGCGC..................... len:22 al:1
.....................................................AUUCCAUGGCAGCUGUGUG........................ len:19 al:20
.....................................................AUUCCAUGGCAGCUGUGUGa....................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGU......................... len:18 al:4
.....................................................AUcCCAUGGCAGCUGUGUGCG...................... len:21 al:1
.....................................................uUUCCAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCa...................... len:21 al:89
.....................................................AUUCCAUGGCAGCUGUGUGCu...................... len:21 al:28
.....................................................AUUCCAUGGCAGCUGUGUGCc...................... len:21 al:15
.....................................................AUUCCAUGGCAGCUaUGUGCG...................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGu....................... len:20 al:8
.....................................................uUUCCAUGGCAGCUGUGUGCG...................... len:21 al:2
.....................................................AUUCuAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................gUUCCAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCG...................... len:21 al:103
.....................................................AUUCCAUGGCAGuUGUGUGCG...................... len:21 al:1
.....................................................AUcCCAUGGCAGCUGUGUGC....................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGuU.................... len:23 al:3
.....................................................AUUCCgUGGCAGCUGUGUGCG...................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGC....................... len:19 al:1
......................................................UUCCAUGGCAGCUGUGUGCGC..................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGu....................... len:19 al:3
......................................................UUCCAUGGCAGCUGUGUGCu...................... len:20 al:1
......................................................UUCCAUGGCAGCUGUGUGCG...................... len:20 al:2
.......................................................UCCAUGGCAGCUGUGUGCG...................... len:19 al:1
........................................................CCAUGGCAGCUGUGUGCG...................... len:18 al:1
..........................................................................CUAGGGCUUCACCUUUUUCAGG len:22 al:1