Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000024l:4086202-4086295 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_15316.ps.pdf
Locus Name: Cluster_15316
UGAUUCAAGACUAUGUACUCAGCUUUCGCGGGAUAAAAACUCCUUCAUGUGAAUUUUUAGCCCGCGGAAGUUGCGUAAGUAUGUCAUAUUCCAC
........((((((.(((.(((((((((((((.((((((.(((.....).)).)))))).))))))))))))).))).))).)))......... (-34.60)
....................AGCUUUCGCGGGAUAAAAACa..................................................... len:21 al:4
....................AGCUUUCGCGGGAUAAAgACUC.................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAAACUa.................................................... len:22 al:2
....................uGCUUUCGCGGGAUAAAAACUC.................................................... len:22 al:2
....................AGCUUUCGCaGGAUAAAAACUCC................................................... len:23 al:1
....................AGCUUUCGCGGGAUAAAAACUCa................................................... len:23 al:27
....................gGCUUUCGCGGGAUAAAAACU..................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACUC.................................................... len:22 al:63
....................AGCUUUCGCGGGAUAAAAACUCC................................................... len:23 al:9
....................AGCUUUCGCGGGAUAAAAACUCg................................................... len:23 al:1
....................AGCUUUCGCaGGAUAAAAACU..................................................... len:21 al:1
....................AGCUUUCGCGGuAUAAAAACUCC................................................... len:23 al:1
....................AGCUUUCGCGGGAUAAAAgCUC.................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAAACUu.................................................... len:22 al:2
....................AGCUUUCGuGGGAUAAAAACU..................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAAuU..................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACc..................................................... len:21 al:8
....................AGCUUUCGCGGGAUAAAAACcC.................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAAACU..................................................... len:21 al:48
....................gGCUUUCGCGGGAUAAAAACUC.................................................... len:22 al:3
....................AGCUUUCGCGGGAUAAAAACg..................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACUCaUU................................................. len:25 al:1
....................AGCUUUCGCGGGAUAAAAACUCuU.................................................. len:24 al:1
....................AGCUUUCGCGGGAUAAAAACUCu................................................... len:23 al:12
....................AGCUUUgGCGGGAUAAAAACUC.................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAA........................................................ len:18 al:1
...........................................UUCAUGUGAAUUUUUAGCCCGCGGAAGUUGC.................... len:31 al:1
...................................................AAUUUUUAGCCCGCGGAAGUUGCu................... len:24 al:5
...................................................AAUUUUUAGCCCGCGGAAGUUGu.................... len:23 al:1
...................................................AAUUUUUAGCCCGCGGAAGUUGC.................... len:23 al:6
...................................................AuUUUUUAGCCCGCGGAAGUUGC.................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUcC.................... len:22 al:2
....................................................AUcUUUAGCCCGCGGAAGUUGC.................... len:22 al:5
....................................................AUUUcUAGCCCGCGGAAGU....................... len:19 al:1
....................................................AUUUUUAGCCCGCGGAAGc....................... len:19 al:8
....................................................AUUUUUAGCCCGCGGAAGUUGCcU.................. len:24 al:18
....................................................AUUUUUAGCCCGCGGAAGUUaC.................... len:22 al:7
....................................................AUUUUUAGCCCGCGGAAG........................ len:18 al:5
....................................................AUgUUUAGCCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAaUUGC.................... len:22 al:2
....................................................uUUUUUAGCCCGCGGAAGU....................... len:19 al:1
....................................................AUUUUUAGCCCGCGGAAGUU...................... len:20 al:41
....................................................AUUUUUAuCCCGCGGAAGUUGCG................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGcUGC.................... len:22 al:6
....................................................AUUUUUAGCCCGCGGAAGUUGC.................... len:22 al:1284
....................................................AUUUUUAGuCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGuGGAAGUUGC.................... len:22 al:2
....................................................AUUUUUAGCCCGCGGuAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUc...................... len:20 al:6
....................................................AUUUUUAGCCCGCGGAAGgU...................... len:20 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCuU.................. len:24 al:272
....................................................cUUUUUAGCCCGCGGAAGUUGCG................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGu.................... len:22 al:761
....................................................AUUUUUAaCCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCaUA................. len:25 al:39
....................................................AUcUUUAGCCCGCGGAAGUUGCG................... len:23 al:1
....................................................AUUUUUAGCCCGCGGgAGUUG..................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAAGUUa..................... len:21 al:8
....................................................AUUUUUAGCCCGCaGAAGUUG..................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAAGUgG..................... len:21 al:1
....................................................AUUUcUAGCCCGCGGAAGUUGCG................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAuUUGCG................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUa...................... len:20 al:3
....................................................AUUUUUAGCuCGCGGAAGUUGC.................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGU....................... len:19 al:54
....................................................AUUUUUAGCCCGCGGgAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCaU.................. len:24 al:176
....................................................AUUUcUAGCCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUaUUAGCCCGCGGAAGUUGC.................... len:22 al:4
....................................................AUUUUUAGCCCGCGGAAGUUc..................... len:21 al:9
....................................................AUUUaUAGCCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUaAGCCCGCGGAAGUUGCG................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCc................... len:23 al:1516
....................................................AUUUUUAGCCCGCGGAAGa....................... len:19 al:3
....................................................AUUUUUAGCCCGCGGgAGUUGCG................... len:23 al:2
....................................................AUUUUUAGCCCGCGGAgGUUGCG................... len:23 al:5
....................................................AUUUUUAGCCCGCGGAAGUUGCuUA................. len:25 al:45
....................................................AUUUUUAGCCCGCGGAAGUcGC.................... len:22 al:5
....................................................gUUUUUAGCCCGCGGAAGUUG..................... len:21 al:2
....................................................uUUUUUAGCCCGCGGAAGUUGC.................... len:22 al:7
....................................................AUUUUUAGCCCGCGGAAGUUG..................... len:21 al:73
....................................................AUUcUUAGCCCGCGGAAGUUGC.................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGCu................... len:23 al:7236
....................................................AUcUUUAGCCCGCGGAAGUUG..................... len:21 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGa.................... len:22 al:93
....................................................AUUUUUgGCCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUcGCG................... len:23 al:1
....................................................AcUUUUAGCCCGCGGAAGUUGC.................... len:22 al:5
....................................................AUUUUUAGCCCGCGGAAGgUGC.................... len:22 al:2
....................................................cUUUUUAGCCCGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGuGGAAGUUG..................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAAGg....................... len:19 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGCa................... len:23 al:1933
....................................................AUUUUUAGCCCGCGGAAGUUGCG................... len:23 al:342
....................................................AcUUUUAGCCCGCGGAAGUUGCG................... len:23 al:1
....................................................gUUUUUAGCCCGCGGAAGUUGC.................... len:22 al:11
....................................................AUUUUUAGCCCaCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCGU.................. len:24 al:5
....................................................AUUUUUAGCCCGCGGAAGUUGg.................... len:22 al:16
....................................................AUUUUcAGCCCGCGGAAGUUGC.................... len:22 al:5
....................................................AUUUUUAGCCuGCGGAAGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAuUUGC.................... len:22 al:3
....................................................AUUUUUAGCCCGCGGAgGUUGC.................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCGc.................. len:24 al:2
.....................................................aUUUUAGCCCGCGGAAGUUGC.................... len:21 al:2
.....................................................UUUUUAGCCCGCGGAAGUUGCuU.................. len:23 al:9
.....................................................gUUUUAGCCCGCGGAAGUUGC.................... len:21 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGCa................... len:22 al:107
.....................................................UUUUUAGCCCGCGGAAGUUG..................... len:20 al:1
.....................................................UUUUUAGCCCGCGGAAGU....................... len:18 al:3
.....................................................UUUUUAGCCCGCGGAAGUUGu.................... len:21 al:21
.....................................................UUUUUAGCCCGCGGAAGUUGCu................... len:22 al:460
.....................................................UUUUUAGCCCGCGGAAGUU...................... len:19 al:2
.....................................................UUUUUAGCCCGCGGAAGUUGC.................... len:21 al:33
.....................................................UUUUUAGCCCGCGGAAGUUGCcU.................. len:23 al:1
.....................................................UUUUUuGCCCGCGGAAGU....................... len:18 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGCaU.................. len:23 al:6
.....................................................UUUUUAGCCCGCGGAAGUUGa.................... len:21 al:3
.....................................................UUUUUAGCCCGCGGAAGUUGCG................... len:22 al:22
.....................................................UUUUUAGCCCGCGGAAGUUGCc................... len:22 al:114
......................................................UUUUAGCCCGCGGAAGUUGCaUA................. len:23 al:1
......................................................UUUUAGCCCGCGGAAGUUGCG................... len:21 al:4
......................................................UUUUAGCCCGCGGAAGUUGC.................... len:20 al:12
......................................................UUUUAGCCCGCGGAAGUUGCc................... len:21 al:52
......................................................UUUUAGCCCGCGGAAGUUGCu................... len:21 al:134
......................................................UUUUAGCCCGCGGAAGUUGu.................... len:20 al:5
......................................................UUUUAGCCCGCGGAAGUUGCa................... len:21 al:32
......................................................UUUUAGCCCGCGGAAGUUGCuU.................. len:22 al:7
......................................................UUUUAGCCCGCGGAAGUUG..................... len:19 al:3
......................................................UUUUAGCCCGCGGAAGUUGa.................... len:20 al:2
.......................................................UUUAGCCCGCGGAAGUUGCc................... len:20 al:3
.......................................................UUUAGCCCGCGGAAGUUGCa................... len:20 al:4
.......................................................UUUAGCCCGCGGAAGUUGCu................... len:20 al:12
.......................................................UUUAGCCCGCGGAAGUUGCuU.................. len:21 al:2
........................................................UUAGCCCGCGGAAGUUGu.................... len:18 al:1
.........................................................UAGCCCGCGGAAGUUGCu................... len:18 al:1