Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000023l:18708903-18708996 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_14402.ps.pdf
Locus Name: Cluster_14402
UGACGUAUCGUGGAAGAUCCCAUUCGUCUCUUGUAUUUUCCUGGUAUAUACCACGAAAAUACAAGUGACUGGUGGGAUAUUCUUUGGUUUACCA
......((((.((((.((((((((.(((.(((((((((((.((((....)))).))))))))))).))).)))))))).)))).))))...... (-39.70)
..AuGUAUCGUGGAAGAUCCC......................................................................... len:19 al:1
.....................AUUuGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:7
.....................AUUCGUCUCUUGUAUUUUCCcGG.................................................. len:23 al:1
.....................AUUCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:13
.....................gUUCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:1
.....................AUcCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:1
.....................AUUCGUCUCUUGUAUUUUCCUGa.................................................. len:23 al:1
......................UUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:256
......................UUCGUCUCUUGUAUUUUCCUGGUu................................................ len:24 al:4
......................UUCGUCUCUUGUAUUUUCCUa................................................... len:21 al:1
......................UUuGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:43
......................UUCGUCUCUUGUAUUUUCCUGGUAgA.............................................. len:26 al:1
......................UUCGUCUCUUGUAUUUUCCUGGc................................................. len:23 al:5
......................UUCGUCUCUUGUAUUUUCCUaG.................................................. len:22 al:1
......................UUCGUCcCUUGUAUUUUCCUGG.................................................. len:22 al:2
......................UUCGUCUCUaGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCc.................................................... len:20 al:4
......................UUCGUCUCUcGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCU.................................................... len:20 al:15
......................UUCGUCUCUUGUAUUUUCCUGGa................................................. len:23 al:1
......................UUCGUCUCUUGUAUUUUCCUGGUA................................................ len:24 al:2
......................UUCGUCUCUUGUAUUUUCCUuG.................................................. len:22 al:1
......................UUCGUCUCcUGUAUUUUCCUGG.................................................. len:22 al:3
......................UUCGUCUCUUGUAUUUUCCg.................................................... len:20 al:3
......................UUCGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:27
......................UUuGUCUCUUGUAUUUUCCU.................................................... len:20 al:2
......................cUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCC..................................................... len:19 al:1
......................UUuGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:56
......................UUCGUCUCUUGUAUUcUCCUGG.................................................. len:22 al:3
......................UUCGUCUCUUGUAUUUUCCUGc.................................................. len:22 al:5
......................UUCGcCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUgUUUUCCUGG.................................................. len:22 al:2
......................UUCGUCUCUUGUAUUUUCCUGa.................................................. len:22 al:81
......................UUCGUCUCUUGUAUUUUCCUGu.................................................. len:22 al:14
......................UUCGUCUCUUGUAUUUUCCUG................................................... len:21 al:2
......................UUCGUCUCUUGUAcUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCcGG.................................................. len:22 al:2
......................UUuGUCUCUUGUAUUUUCCUGGUA................................................ len:24 al:1
......................aUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCa.................................................... len:20 al:5
.......................UCGUCUCUUGUAUUUUCCUGa.................................................. len:21 al:3
.......................UCGUCUCUUGUAUUUUCCUGGa................................................. len:22 al:3
.......................UCGUCUCUUGUAUUUUCCUGGUAUu.............................................. len:25 al:1
.......................UuGUCUCUUGUAUUUUCCUGG.................................................. len:21 al:1
.......................UCGUCUCUUGUAUUUUCCUGG.................................................. len:21 al:10
.......................UCGUCUCUUGUAUUUUCCUGGc................................................. len:22 al:4
.......................UCGUCUCUUGUAUUUUCCUGaU................................................. len:22 al:1
.......................UuGUCUCUUGUAUUUUCCUGGU................................................. len:22 al:1
.......................UCGUCUCUUGUAUUUUCCUGGU................................................. len:22 al:17
........................CuUCUCUUGUAUUUUCCUGG.................................................. len:20 al:1
........................CGUCUCUUGUAUUUUCCUGcU................................................. len:21 al:1
........................CGUCUCUUGUAUUUUCCUGc.................................................. len:20 al:1
........................CGUCUCUUGUAUUUUCCUGG.................................................. len:20 al:10
........................CGUCUCUUGUAUUUUCCUcG.................................................. len:20 al:1
........................uGUCUCUUGUAUUUUCCUGG.................................................. len:20 al:10
........................uGUCUCUUGUAUUUUCCUGGU................................................. len:21 al:27
........................CGUCUCUUGUAUUUUCCUGGUc................................................ len:22 al:1
........................CGUCUCUUGUAUUUUCCUGGUu................................................ len:22 al:1
........................CGUCUCUUGUAUUUUCCUGa.................................................. len:20 al:8
........................uGUCUCUUGUAUUUUCCU.................................................... len:18 al:2
........................CGUCUCUUGUAUUUUCCUGGU................................................. len:21 al:8
...................................................CACGAAAAUACAAGUGACUGGU..................... len:22 al:7
...................................................CACGAAAAUACAAGUGACUGGc..................... len:22 al:3
...................................................CACGAAAAUACAAGUGACUGGUG.................... len:23 al:1
...................................................CACGAAAAUACAAGUGACUGcU..................... len:22 al:1
....................................................ACGAAgAUACAAGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGG...................... len:20 al:4
....................................................ACGAAAAUACAAGUGACUGGUGa................... len:23 al:9
....................................................ACGAAAAUACAAGUGACUGGUG.................... len:22 al:56
....................................................ACGAAAAUACAAGUGACUGGc..................... len:21 al:8
....................................................AgGAAAAUACAAGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGGcG.................... len:22 al:1
....................................................ACGAAAAUACAAGUGACUGGUGGa.................. len:24 al:1
....................................................ACGAAAAUACAAGUGACUGGa..................... len:21 al:2
....................................................ACGAAAAUACAAGUGACUGGUu.................... len:22 al:6
....................................................ACGAAAAUACAAGUGACUGGUGGu.................. len:24 al:8
....................................................ACGAAAAUACAAGUGACUGa...................... len:20 al:1
....................................................AgGAAAAUACAAGUGACUGGUGG................... len:23 al:1
....................................................ACGAAAAUACAAGUGACUGGUc.................... len:22 al:4
....................................................ACGAAAAUACAAGUGACaGGUGG................... len:23 al:2
....................................................ACGAAAAUACgAGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGGUGc................... len:23 al:6
....................................................ACGAAAAUACcAGUGACUGGUG.................... len:22 al:2
....................................................ACGAAAAUACAAGUGACUGGUGu................... len:23 al:41
....................................................ACGAAAAUACAAGUGACUGGU..................... len:21 al:39
....................................................gCGAAAAUACAAGUGACUGGUG.................... len:22 al:3
....................................................ACGAAAAUACAAGUGACUGGUa.................... len:22 al:18
....................................................ACGAAAAUACAAGUGACUGGaG.................... len:22 al:1
....................................................ACGAAAAUACAAGUGACUGGUGG................... len:23 al:12