Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000018l:2286780-2286870 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_10419.ps.pdf
Locus Name: Cluster_10419
AUUUCAAUUAGCUAGGUCAGUGUUUGAACAGUCCAAGUAGCAGUUAUUGUUCUUUGCACUGUUCAAACCCUGCCCUACCUAGCCAUUUGGG
...((((...((((((((((.(((((((((((.((((.((((.....)))).)))).))))))))))).)))....)))))))...)))). (-35.30)
..................AGUGUUUGAACAGUCCAAGUA.................................................... len:21 al:2
..................AGUGUUUGAACAGUCCAAGUAGu.................................................. len:23 al:1
..................AGUGUUUGAACAGUCCAAGUAGCg................................................. len:24 al:1
..................AGUGUUUGAACAGUCCAAGUAGC.................................................. len:23 al:2
..................AGUGUUUGAACAGUCCgAGU..................................................... len:20 al:1
...................cUGUUUGAACAGUCCAAGUAGC.................................................. len:22 al:3
...................GUGUUUGAACAGUCCAAGUAGCA................................................. len:23 al:2
....................UGUUUGAACAGUCCgAGUAGC.................................................. len:21 al:1
....................UGUUUGAACAGUCCAAGU..................................................... len:18 al:8
....................UGUUUGAACAGUCCAAGUAGCu................................................. len:22 al:2
....................UGUUUGAACAGUCCAgGU..................................................... len:18 al:2
....................UGUUUGAACAGUCCAAGUAGu.................................................. len:21 al:4
....................UGUUUGAACAGUCCAAGUA.................................................... len:19 al:1
....................UGUUUGAACAGUCCAAGc..................................................... len:18 al:3
....................UGUUUGAACAGUCCAAGUAGCA................................................. len:22 al:15
....................UGUUUGAACAGUCCAAGUAGa.................................................. len:21 al:1
....................UGUUUGAACAGUCCAAGUAGC.................................................. len:21 al:15
....................UGUUUGAACAGUCCAAGUAaC.................................................. len:21 al:1
....................UGUUUGAACAGUCCAAGUAGCg................................................. len:22 al:3
....................UGUUUGAgCAGUCCAAGUAGC.................................................. len:21 al:1
.....................GUUUGAACAGUCCAAGUAGCA................................................. len:21 al:2
......................UUUGAACAGUCCAAGUAGCAGUUAU............................................ len:25 al:1
......................UUUGAACAGUCCAAGUAGCAGUUAUUGUU........................................ len:29 al:1
......................UUUGAACAGUCuAAGUAGCAGUUAUU........................................... len:26 al:1
......................UUUGAACAGUCCAAGUAGC.................................................. len:19 al:2
......................UUUGAACAGUCCAAGUAGCA................................................. len:20 al:1
.........................................AGUUAUUGUUCUUUGCACUGUUCAAAuCCUG................... len:31 al:1
............................................UAUUGUUCUUUGCACUGUUCAAACCCU.................... len:27 al:1
.................................................UUCUcUGCACUGUUCAAACCCU.................... len:22 al:2
.................................................UUCUUUGCACUGUUCAAAuCC..................... len:21 al:8
.................................................UUCUUUGCACUGUUCAAACCCc.................... len:22 al:198
.................................................UUCUUUGCgCUGUUCAAACCCUGC.................. len:24 al:1
.................................................UUCUUUGCAuUGUUCAAACCCU.................... len:22 al:2
.................................................UUCUUUGCACUGUUCAAACCg..................... len:21 al:4
.................................................UUuUUUGCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCcUUGCACUGUUCAAACCCUG................... len:23 al:2
.................................................UcCUUUGCACUGUUCAAACCCU.................... len:22 al:4
.................................................UUCcUUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCcUUGCACUGUUCAAACCCU.................... len:22 al:3
.................................................UUCUUUGCACUGUUCAAAuCCUG................... len:23 al:19
.................................................UUCUUUGCACcGUUCAAACCCU.................... len:22 al:3
.................................................UUCUUUGuACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACcGUUCAAACCCUG................... len:23 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGCC................. len:25 al:6
.................................................UUCUUUGCACUGUUCAAACC...................... len:20 al:17
.................................................UUCUUUGCACUGUcCAAACCCU.................... len:22 al:4
.................................................UUCUUUGCACUGUUCAAACCCUGa.................. len:24 al:24
.................................................UUCUUUGCACUGUUCgAACCCU.................... len:22 al:4
.................................................cUCUUUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGu.................. len:24 al:414
.................................................UUCUUUGCACUGUUCAAACCCUGCCa................ len:26 al:2
.................................................UUCUUUGCACUGUUCAAACCCUGC.................. len:24 al:130
.................................................UUCUUUGCACUGUUCAAACuC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUc................... len:23 al:12
.................................................UUCUUUGCgCUGUUCAAACCCU.................... len:22 al:3
.................................................UaCUUUGCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUaUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACa...................... len:20 al:3
.................................................UcCUUUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAgACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCCg.................... len:22 al:34
.................................................UUCUUUGCACUGUUCAAACCa..................... len:21 al:39
.................................................cUCUUUGCACUGUUCAAACCCU.................... len:22 al:10
.................................................UUCUUUGCACUGUUCAuACCCU.................... len:22 al:1
.................................................UUCUUcGCACUGUUCAAACCCUG................... len:23 al:2
.................................................UUCUUUGCACUGUUCAAACCCU.................... len:22 al:895
.................................................UUCUUUGCACUGUUCAAAuCCU.................... len:22 al:15
.................................................UUCUUUGCACUGUUCAAAuCCUGC.................. len:24 al:5
.................................................UUCUUUGCACUGUUCAAACCu..................... len:21 al:58
.................................................UUCUUUGCACUGUUCAAACCCUu................... len:23 al:92
.................................................UUCUUUGCACUGUUCgAACCCUGC.................. len:24 al:2
.................................................UUCUUUGCACUGUUCAAACCCUGCa................. len:25 al:14
.................................................UUCUUUGCACUGUUCAAACCCUuC.................. len:24 al:8
.................................................UUCUUUGCACUGUUCAAACCCUGCuC................ len:26 al:4
.................................................UUCUUUGCACUGUUCAAACCCa.................... len:22 al:213
.................................................UUCUUUGCACUGUUCAAACCCcG................... len:23 al:2
.................................................UUCUUUGCACUGUUCAAACu...................... len:20 al:8
.................................................UUCUUUGCACaGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAA........................ len:18 al:1
.................................................UUCUUUGCACUaUUCAAACCCU.................... len:22 al:3
.................................................UUCUUUGCACUGUUCAAACCCUa................... len:23 al:42
.................................................UUCUUUGCACUGUUCAAACCCUGg.................. len:24 al:5
.................................................UUCUgUGCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCC..................... len:21 al:86
.................................................UUCUUUGCACUGUUCAAACuCU.................... len:22 al:1
.................................................UUCUUUGCACUGcUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGCu................. len:25 al:26
.................................................UUCUUUGCACUGUUCAAACCuU.................... len:22 al:10
.................................................UUCUUUGCACUGUUCAAACCCUGuC................. len:25 al:5
.................................................UUCUUUGCACUGUcCAAACCCUGC.................. len:24 al:1
.................................................UUCUUUGCACUGUUCAAAC....................... len:19 al:3
.................................................UUCUUcGCACUGUUCAAACCCU.................... len:22 al:4
.................................................UUCUUUGuACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAgCCCU.................... len:22 al:3
.................................................UUCUUUGCACUGUUCAAACCaU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACaCU.................... len:22 al:2
.................................................UUCUUcGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAcCCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUaCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCCUG................... len:23 al:86
.................................................aUCUUUGCACUGUUCAAACCCU.................... len:22 al:2
.................................................UUCUUUGCACUGcUCAAACC...................... len:20 al:1
.................................................UUCUUUGCAuUGUUCAAACCCUG................... len:23 al:2
..................................................UCUUUGCACUGUUCAAACCCUGCuC................ len:25 al:1
..................................................UCUUUGCACUGUUCAAACCCU.................... len:21 al:12
..................................................UCUUUGCACUGUUCAAACCCUGg.................. len:23 al:1
..................................................UCUUUGCACUGUUCAAACCCUa................... len:22 al:1
..................................................UCUUUGCACUGUUCAAACCCUGu.................. len:23 al:6
..................................................UCUUUGCACUGUUCAAACCCUGa.................. len:23 al:3
..................................................UCUUUGCACUGUUCAAACCCUGC.................. len:23 al:3
..................................................UCUUUGCACUGUUCAAACCCUGCa................. len:24 al:1
..................................................UCUUUGCACUGUUCAAACCCUGCu................. len:24 al:1
..................................................UCUUUGCACUGUUCgAACCCUGC.................. len:23 al:1
..................................................UCUUUGCACUGUUCAAACCCUu................... len:22 al:1
..................................................UCUcUGCACUGUUCAAACCCU.................... len:21 al:1
..................................................UCUUUGCACUGUUCAAACCCc.................... len:21 al:2
...................................................CUUUGCACUGUUCAAACu...................... len:18 al:3
...................................................CUUUGCACUGUUCAAACCuU.................... len:20 al:3
...................................................CUUUGCACUGUUCAAAuCCU.................... len:20 al:2
...................................................CUUUGCACUGUUCAAACCCUa................... len:21 al:2
...................................................CUUUGCACUGUUCAAACCC..................... len:19 al:1
...................................................CUUUGCACUGUUCAAACCCg.................... len:20 al:1
...................................................CUUcGCACUGUUCAAACCCU.................... len:20 al:3
...................................................CUUUGCACUGUUCAAACCCU.................... len:20 al:42
...................................................CUUUGCACUGUUCAAACCCUG................... len:21 al:1
...................................................CUUUGCACUGUUCAAACCu..................... len:19 al:2
...................................................CUUUGCACUGUUCAAACCCa.................... len:20 al:16
...................................................CUUUGCACUGUUCgAACCCU.................... len:20 al:1
...................................................CUUUGCACUGUUCAAACa...................... len:18 al:1
...................................................CUUUGCACUGUUCAAACCCUu................... len:21 al:3
...................................................CUUUGCACUGUUCAAACCCUGu.................. len:22 al:7
...................................................CUUUGCACUGUUCAAACCCc.................... len:20 al:5
...................................................CUUUGCACUGUUCAAACCaU.................... len:20 al:1
...................................................CUUUGCACUGUUCAAACCa..................... len:19 al:2
...................................................CUUUGCACUGUUCAAACC...................... len:18 al:2
....................................................UUUGCACUGUUCAAACCCc.................... len:19 al:1
.....................................................UUGCACUGUUCAAACCCUGu.................. len:20 al:3
.....................................................UUGCACUGUUCAAACCCa.................... len:18 al:2
.....................................................UUGCACUGUUCAAACCCU.................... len:18 al:1
.....................................................UUGCACUGUUCAAACCCUa................... len:19 al:1
.....................................................UUGCACUGUUCAAACCCc.................... len:18 al:1
.....................................................UUGCACUGUUCAAACCCUc................... len:19 al:1
......................................................UGCACUGUUCAAACCCUu................... len:18 al:1