Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000017l:7471118-7471210 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_10228.ps.pdf
Locus Name: Cluster_10228
GACUUUUUCUGGUUAAGAAAUGGACAAAGGCUCCAAGCAAAUGUUUAUCAUUUGCUAGUUGCUUUUGUCCCGUUCUUAAACUAGAUAUUCAUA
.......((((((((((((..((((((((((..(.((((((((.....)))))))).)..))))))))))..))))).)))))))........ (-37.60)
....................cGGACAAAGGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAAA.................................................... len:21 al:2
....................UGGACAAAGGCaCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCcCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAA..................................................... len:20 al:3
....................UGGACAAAGGCcCCAAGCAAAU................................................... len:22 al:2
....................aGGACAAAGGCUCCAAGCAAAUGU................................................. len:24 al:1
....................UGGACAAAGGCUCCAAGCAAAUG.................................................. len:23 al:126
....................UGGACAAAGGCUCCAAGCAAAUu.................................................. len:23 al:2
....................UGGACAAAGGCUCCAAGCAAAUa.................................................. len:23 al:13
....................UGGAuAAAGGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAAAU................................................... len:22 al:4
....................UGGACAAAGGuUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAAAUc.................................................. len:23 al:2
....................UGGACAAAGGCUCCgAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCA...................................................... len:19 al:1
....................UGGACAAAGGCUCCAAGCAAAUGU................................................. len:24 al:5
....................UGGACAAAGGCUCCAAGC....................................................... len:18 al:1
....................UGGACAAAGGCUCCAAGCAAAUGUUU............................................... len:26 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGUUaUU................ len:27 al:1
..................................................UUUGCUAGUUGCUUUUGUCu....................... len:20 al:3
..................................................UUUGCUAGUUaCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCcUUUGUCCCGU.................... len:23 al:4
..................................................UUUGuUAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUUGUCCgGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGcU................... len:24 al:62
..................................................UUUGCUAGUUGCUUUUGUCCCGUUa.................. len:25 al:4
..................................................UUUGCUAGUUGCUUUUGUaCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUaGUCCCGU.................... len:23 al:1
..................................................cUUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:3
..................................................UUUGCUAGUUGCUcUUGUCCCGU.................... len:23 al:3
..................................................UUUGCUcGUUGCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUcGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCu..................... len:22 al:23
..................................................aUUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGaUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUcGUCCCGU.................... len:23 al:8
..................................................UUUGCUgGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGcUC.................. len:25 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:912
..................................................UUUGCUAGUUGCUUUUGUCCCGUa................... len:24 al:12
..................................................UUUGCUAGUUGCUUUUGUCCCGUUuU................. len:26 al:2
..................................................UUUGCUAGUUGCUUUUGUu........................ len:19 al:1
..................................................UUUGCUAGUUGCUUUUGUC........................ len:19 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGgU................... len:24 al:3
..................................................UUUGCUAGUUGCUUUUGUCCCGUUg.................. len:25 al:2
..................................................UUUGCUAGUUGCUUUUGUuCCGU.................... len:23 al:3
..................................................UUUGCUAGUUGCUUUUGUCCCa..................... len:22 al:5
..................................................UUUGCUAGUUGCUUUUGUCCCuUU................... len:24 al:3
..................................................UUUGCUAGcUGCUUUUGUCCCGU.................... len:23 al:7
..................................................UaUGCUAGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUuGUUGCUUUUGUCCCGUU................... len:24 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGa.................... len:23 al:56
..................................................UUUGCUAGUUGCUUUUGUCa....................... len:20 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCcU.................... len:23 al:26
..................................................UaUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUaGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUUGUCCa...................... len:21 al:9
..................................................UUUGCUAGUUGCUUUUGUCC....................... len:20 al:11
..................................................UcUGCUAGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAaUUGCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGUCCC...................... len:21 al:18
..................................................UUUGCUAGUUGCUUUUGUCCaGU.................... len:23 al:5
..................................................UUUGCaAGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGc.................... len:23 al:234
..................................................UUUGCUAGUUGCUUUUGUCCCc..................... len:22 al:8
..................................................UUUGCUAGUcGCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGcCCCGU.................... len:23 al:3
..................................................UUUGCUAGUUGCUUUUGUCaCGU.................... len:23 al:1
..................................................UUUGCcAGUUGCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCuU.................... len:23 al:5
..................................................UUUGCUAGUUGCUUUUGUCCCaU.................... len:23 al:5
..................................................UUUGCUAGUUGCUUUUGUCCCGUU................... len:24 al:102
..................................................UUUGCUAGUUGCUUUUGUCCCG..................... len:22 al:6
..................................................UUUGCUAGUUGCUUUUGUCCCGUUu.................. len:25 al:15
..................................................UUUGCUAGUUGCaUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGUUC.................. len:25 al:1
..................................................UUUGCaAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUcGCUAGUUGCUUUUGUCCCGU.................... len:23 al:5
..................................................UUUGCUAGUUGCUUcUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGUc................... len:24 al:19
..................................................UUUGCUAGUUGCUUUUGUCCCGg.................... len:23 al:29
...................................................UUGCUAGUUGCUUUUGUCCCGU.................... len:22 al:10
...................................................UUGCUAGUUGCUUUUGUCCCGUU................... len:23 al:4
...................................................UUGCUAGUUGCUUUUGUCCCGUa................... len:23 al:2
...................................................UUGCUAGUUGCUUUUGUCCCGUc................... len:23 al:1
...................................................UUGCUAGUUGCUUUUGUCC....................... len:19 al:1
....................................................UGCUAGUUGCUUUUGUCC....................... len:18 al:1
....................................................UGCUAGUUGCUUUUGUCCCGU.................... len:21 al:4