Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000016l:11751358-11751448 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_10093.ps.pdf
Locus Name: Cluster_10093
CCUGACGGGCUCUGGGAGUGAGUGCACUUUUCUCAGGAUGAAUUGAAUUCUUCUUGAGAAAAUUUCACCCACUCCUGGAACCAAUGAGAAU
.((.(..((.((((((((((.(((...(((((((((((.((((...)))).)))))))))))...))).)))))))))).))..).))... (-39.80)
CCUGACGGGCUCUGGGAGUG....................................................................... len:20 al:3
CCUGACGGGCUCUGGGAGUa....................................................................... len:20 al:1
CCUGACGGGCUCUGGGAGU........................................................................ len:19 al:1
CCUGACGaGCUCUGGGAGUG....................................................................... len:20 al:1
.CUGACGGGCUCUGGGAGUa....................................................................... len:19 al:7
.CUGACGGGCUCUGGGAGUG....................................................................... len:19 al:13
.CUGACGGGCUCUGGGuGUG....................................................................... len:19 al:1
.CUGACGGGCUCUGGGAGU........................................................................ len:18 al:1
.CUGACaGGCUCUGGGAGUG....................................................................... len:19 al:4
..UGACGGGCUCUGGGAGUG....................................................................... len:18 al:29
..UGACGGGCUCUGGGAGUc....................................................................... len:18 al:1
..UGACGGGCUCUGGGAGUu....................................................................... len:18 al:3
..UGgCGGGCUCUGGGAGUG....................................................................... len:18 al:2
..UGACGGGCUCUGGGAGUa....................................................................... len:18 al:8
..UGACGGGCUCUGGGAGcG....................................................................... len:18 al:1
..................UGAGUGCACUUUUCUCAGGAUGAA................................................. len:24 al:1
...................aAGUGCACUUUUCUCAGGAUGAA................................................. len:23 al:2
...................cAGUGCACUUUUCUCAGGAUGA.................................................. len:22 al:1
....................cGUGCACUUUUCUCAGGAUG................................................... len:20 al:3
....................AGUGCACUUaUCUCAGGAUGA.................................................. len:21 al:1
....................AGaGCACUUUUCUCAGGAU.................................................... len:19 al:1
....................AGUGCACcUUUCUCAGGAUGA.................................................. len:21 al:20
....................uGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:27
....................AGUGCACUUUUCUCAGGAUGgA................................................. len:22 al:104
....................gGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:56
....................AGaGCACUUUUCUCAGGAUGAAU................................................ len:23 al:3
....................AGUGCACUUUUCUCuGGAUGAA................................................. len:22 al:7
....................AGUGCACUUgUCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAGGAUGcAU................................................ len:23 al:1
....................uGUGCACUUUUCUCAGGAU.................................................... len:19 al:4
....................AGUGCACUUUUCUCAGGgUG................................................... len:20 al:8
....................AGUGgACUUUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUcUUCUCAGGAUG................................................... len:20 al:11
....................AGUGCgCUUUUCUCAGGAUG................................................... len:20 al:6
....................AGUGCACUUUUCUuAGGAUGAA................................................. len:22 al:7
....................AGUGCuCUUUUCUCAGGAUG................................................... len:20 al:2
....................AGUGCACUUUUCUCAGGAc.................................................... len:19 al:152
....................AGUGCACUUUUCUCcGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAcG................................................... len:20 al:22
....................AGUGuACUUUUCUCAGGAUGAA................................................. len:22 al:12
....................AGUGCACUUUUCUCuGGAUGAAU................................................ len:23 al:5
....................AGUGCgCUUUUCUCAGGAUGAA................................................. len:22 al:36
....................AGUGCACUUUUCUCAGcA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAuGAUGAA................................................. len:22 al:3
....................AGUGCACUUUaCUCAGGAU.................................................... len:19 al:1
....................cGUGCACUUUUCUCAGGAU.................................................... len:19 al:1
....................AGUGCACUUUUCUCuGGAUG................................................... len:20 al:2
....................AGUGCACUUUUCcCAGG...................................................... len:17 al:1
....................AGUGCACUUUUCUCAGGcU.................................................... len:19 al:1
....................AGUGCACUUUUCUCAGGg..................................................... len:18 al:4
....................AGUGCACUUUUCUCAGaA..................................................... len:18 al:1
....................AGaGCACUUUUCUCAGGAUG................................................... len:20 al:1
....................AcUGCACUUUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGAcGAA................................................. len:22 al:18
....................AGUGCACgUUUCUCAGGAUGAA................................................. len:22 al:2
....................AGUGCACUUUUCUCgGGAUGAAU................................................ len:23 al:14
....................AGUGCACUcUUCUCAGGAUGAAU................................................ len:23 al:32
....................cGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:18
....................AaUGCACUUUUCUCAGGAUGA.................................................. len:21 al:8
....................AGUGCACUUUUCaCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUUcUCUCAGGAUG................................................... len:20 al:9
....................AaUGCACUUUUCUCAGGAU.................................................... len:19 al:2
....................AGUGCACUUUUCUCAGGgUGAA................................................. len:22 al:21
....................AGUGCACUUUUCUCAGGgUGAAUU............................................... len:24 al:2
....................AGUGCACUUUUCUCAGGAU.................................................... len:19 al:982
....................AGUGCACUUUUCUCcGGAUGAA................................................. len:22 al:3
....................AGUGCACUUcUCUCAGGAUGAA................................................. len:22 al:20
....................AGUGCACUUUUCUCAaGAUGA.................................................. len:21 al:3
....................AGUGCACUUUUCUCgGGAU.................................................... len:19 al:3
....................AGUGCACUaUUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUcUCUCAGGAU.................................................... len:19 al:5
....................AGUGCACUUUUCUCAaGAUGAAU................................................ len:23 al:2
....................AGUGCACUUUUCUCAGuAUGA.................................................. len:21 al:1
....................AGUaCACUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUgCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCgCUUUUCUCAGGAUGA.................................................. len:21 al:13
....................AGgGCACUUUUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUCUCAGGgUGAAU................................................ len:23 al:11
....................gGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:116
....................AGUGCACUUUUCUCgGGAUGAA................................................. len:22 al:40
....................AGUGCACaUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AaUGCACUUUUCUCAGGAUGAA................................................. len:22 al:11
....................AGUGCACUUUUCaCAGGAUG................................................... len:20 al:1
....................AGUGCACUgUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGGA..................................................... len:18 al:214
....................AGUGCACUUUUCUCAGGAUGcA................................................. len:22 al:10
....................AGUGCuCUUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGcGCACUUUUCUCAGGAUGA.................................................. len:21 al:16
....................AGUGCACUUUUCUCAGGAUGAAcU............................................... len:24 al:5
....................AGUGCACUUUUCUCAGGAUu................................................... len:20 al:98
....................AGUGCACUUUUCUCAGGAUGAu................................................. len:22 al:138
....................AGUGCACUUUUCUCAGGgU.................................................... len:19 al:13
....................AGUGCACUUUUCUCAGGAUG................................................... len:20 al:2316
....................AGUGCACUUUUCcCAGGAUGA.................................................. len:21 al:11
....................AGUaCACUUUUCUCAGGAUG................................................... len:20 al:5
....................AGUGCACUUUUCUCAGGAaG................................................... len:20 al:4
....................AGUGCAuUUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAUGAAUc............................................... len:24 al:20
....................cGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:8
....................AGUaCACUUUUCUCAGGAUGAA................................................. len:22 al:15
....................AGUGCACUUUUCUCAGGAUGAAUa............................................... len:24 al:22
....................AGUGCACcUUUCUCAGGAUGAA................................................. len:22 al:66
....................AGaGCACUUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGuACUUUUCUCAGGAUG................................................... len:20 al:3
....................AGUGCACUUUUCUCAaGAUGAA................................................. len:22 al:5
....................AGUGCACUUUUCUCAcGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGaAUGAAU................................................ len:23 al:3
....................AGUGCACUUUUCUCAGGAUGgAUU............................................... len:24 al:1
....................AGUGCACUUUUCUCAGGgUGA.................................................. len:21 al:9
....................AGUGCACUUUUCUCAGGAUaAA................................................. len:22 al:7
....................AGUGCACUUUUCUCAGGAUaA.................................................. len:21 al:11
....................AGUGCACUUUUCUCAGGcUG................................................... len:20 al:4
....................AGUGCACUUUUCUCAGGAUGAcU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGaAUGAA................................................. len:22 al:2
....................AGUGCACUUUUCUCA........................................................ len:15 al:8
....................AGUGCACUUUUCUCAGaAUGA.................................................. len:21 al:4
....................AGUGCACUUcUCUCAGGAUGA.................................................. len:21 al:10
....................AGUGCACUUaUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUaCUCAGGAUGAAU................................................ len:23 al:2
....................cGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:6
....................AuUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:2
....................AGUGaACUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCcCAGGAUG................................................... len:20 al:9
....................gGUGCACUUUUCUCAGGAU.................................................... len:19 al:16
....................AGUGCACaUUUCUCAGGAU.................................................... len:19 al:2
....................AGUGCACUUUcCUCAGGAUGAA................................................. len:22 al:30
....................AGcGCACUUUUCUCAGGAUG................................................... len:20 al:13
....................AGUGuACUUUUCUCAGGAU.................................................... len:19 al:5
....................AGUGCACUUUUuUCAGGAUGAA................................................. len:22 al:4
....................AGUGCACUUUUCcCAGGA..................................................... len:18 al:2
....................AGUGCgCUUUUCUCAGGAUGAAU................................................ len:23 al:13
....................AGUGCACUUUcCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAGGAUGAAaU............................................... len:24 al:2
....................AGUGCACUUUUCUCAGGAgGA.................................................. len:21 al:7
....................AuUGCACUUUUCUCAGGAUGAA................................................. len:22 al:3
....................uGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:40
....................AGgGCACUUUUCUCAGGAUGAA................................................. len:22 al:5
....................AGUGCACUUUUCUCAGGAUGAg................................................. len:22 al:108
....................AGUGCACaUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCcCAGGAU.................................................... len:19 al:2
....................AGUGCACUUUcCUCAGGAUGAAUU............................................... len:24 al:1
....................uGUGCACUUUUCUCAGGAUG................................................... len:20 al:8
....................gGUGCACUUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUuUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAcGAAU................................................ len:23 al:11
....................AGUGCACgUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACgUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUgUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUaCACUUUUCUCAGGAU.................................................... len:19 al:2
....................AGUGCACUUUUCUCAGGAgGAA................................................. len:22 al:5
....................AGUGaACUUUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAcGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAaGAUG................................................... len:20 al:2
....................AGUGCACcUUUCUCAGGA..................................................... len:18 al:3
....................AGUGCACUUUUCUCAaGAU.................................................... len:19 al:1
....................AGUGCACUUUUCUCAGuAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGAa.................................................... len:19 al:29
....................gGUGCACUUUUCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCgGGAUGA.................................................. len:21 al:21
....................AaUGCACUUUUCUCAGGAUG................................................... len:20 al:2
....................AGUGCACUUUUCUCAcGAUG................................................... len:20 al:1
....................AGUGCACUUUaCUCAGGAUGA.................................................. len:21 al:4
....................AGUGCACUUUUCUCAGGAUGc.................................................. len:21 al:35
....................AGUGgACUUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAcGA.................................................. len:21 al:9
....................AGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:9236
....................AGUGCACUUUUCUCAGGAUGAAa................................................ len:23 al:351
....................AGUaCACUUUUCUCAGGAUGA.................................................. len:21 al:10
....................AGUGCACUUcUCUCAGGAUGAAU................................................ len:23 al:10
....................AGUGCACUUUgCUCAGGAUGAA................................................. len:22 al:2
....................AGUGCACUaUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUUUUCUCAGuAUGAAU................................................ len:23 al:2
....................AGcGCACUUUUCUCAGGAUGAAU................................................ len:23 al:14
....................AGUGCAaUUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUUUUCUCAGGAUa................................................... len:20 al:603
....................AGUGCACUUUUCUCAGGAUGAAUUu.............................................. len:25 al:6
....................AGUGCACUUUUCaCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAG....................................................... len:16 al:5
....................AGaGCACUUUUCUCAGGAUGAA................................................. len:22 al:5
....................gGUGCACUUUUCUCAGGAUG................................................... len:20 al:35
....................AGUGCAuUUUUCUCAGGAUGAA................................................. len:22 al:14
....................uGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:13
....................AGUGCACUUUUuUCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUcUUCUCAGGAU.................................................... len:19 al:3
....................AGUGCACUUUUCaCAGGAUGA.................................................. len:21 al:1
....................AGUGaACUUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAu....................................................... len:16 al:2
....................AGUGCACUUUUCgCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGcAU.................................................... len:19 al:1
....................AGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:4676
....................AGUGCACUUUUCUCAGGAgG................................................... len:20 al:5
....................AGUGCACUcUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGcGCACUUUUCUCAGGAUGAA................................................. len:22 al:49
....................AGUGCAuUUUUCUCAGGAUGAAU................................................ len:23 al:4
....................AGUGCACUUUUCUCAGGAUc................................................... len:20 al:42
....................AGUGCACUUUUCUCAGGAUGAAg................................................ len:23 al:22
....................AcUGCACUUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUUUcCUCAGGAUGA.................................................. len:21 al:21
....................AGUGCgCUUUUCUCAGGAU.................................................... len:19 al:4
....................AGUGCACUUUcCUCAGGAUGAAU................................................ len:23 al:8
....................AGUGCACUcUUCUCAGGAUGA.................................................. len:21 al:23
....................AGUGCACUgUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUUUUCUCAGGuUGAA................................................. len:22 al:1
....................AGUGuACUUUUCUCAGGAUGAAU................................................ len:23 al:6
....................AGUGCACUUUUCUCAGGAUGAAc................................................ len:23 al:431
....................AGUGCACUUUUCUCgGGAUG................................................... len:20 al:14
....................AGUGCACUUUUCUCAGGAUGAgU................................................ len:23 al:25
....................AGUGCACUUUUCUCAGGAUGAuUU............................................... len:24 al:1
....................AGUGCACUUUUCgCAGGAUG................................................... len:20 al:2
....................AGUGCACcUUUCUCAGGAU.................................................... len:19 al:10
....................AGUGCACUcUUCUCAGGAUGAA................................................. len:22 al:35
....................AGUGCgCUUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACcUUUCUCAGGAUGAAU................................................ len:23 al:24
....................AGUGCACUUUUCUCAGGAUGAAUU............................................... len:24 al:171
....................AGUGCACUUUUCUCAGGAUGu.................................................. len:21 al:149
....................AGUGCACUUUUCcCAGGAUGAAU................................................ len:23 al:16
....................AGUGCAaUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUcCUCAGGAU.................................................... len:19 al:3
....................AGUGCACUUUUCUCAGGAUGuAU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGGAUGAuU................................................ len:23 al:64
....................AaUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:2
....................cGUGCACUUUUCUCAGGA..................................................... len:18 al:1
....................AGUGCAuUUUUCUCAGGAUG................................................... len:20 al:2
....................AGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:3301
....................AGUGCACUUUUCUCuGGAUGA.................................................. len:21 al:2
....................AGUGCACcUUUCUCAGGAUG................................................... len:20 al:13
....................AGUGCACUUUUCcCAGGAUGAA................................................. len:22 al:36
....................AGUGCACUUUUCUCAGGAUGg.................................................. len:21 al:100
....................AGUGCACUUUUCUCAGGAUuA.................................................. len:21 al:1
....................AGUGCACUUUUCUCAGaAUG................................................... len:20 al:1
....................AGUGCACUaUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGAUGAAUg............................................... len:24 al:3
....................AGUGCACUUUUCUCAGGAaGA.................................................. len:21 al:3
....................AGUGCACUUUUCUCAGGAUcA.................................................. len:21 al:12
....................AGgGCACUUUUCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAGGAg.................................................... len:19 al:7
....................AGUGCACUUUUCUCAGGAUGuA................................................. len:22 al:9
....................AGUGCACUUUaCUCAGGAUGAA................................................. len:22 al:2
....................AGUGCACUUUgCUCAGGAU.................................................... len:19 al:1
....................AGUGCACUUUUCgCAGGAUGAAU................................................ len:23 al:2
....................gGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:47
....................AGUGCACUUUUCUCAGGAUaAAU................................................ len:23 al:9
....................AGUGCACUUUUCUCAGGAUGAc................................................. len:22 al:17
....................AGUGCACUUUUCUCAGGAUGgAU................................................ len:23 al:14
....................AGcGCACUUUUCUCAGGAU.................................................... len:19 al:3
....................AGUGCACUUUUCUCgGGA..................................................... len:18 al:2
....................AGUGCACUUUUCUCAGGAaGAA................................................. len:22 al:2
....................AGUGCACUUgUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUuAGGAUGAAU................................................ len:23 al:2
....................AuUGCACUUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUUUcCUCAGGAUG................................................... len:20 al:13
....................AGUGCACUUUUCUuAGGAUGA.................................................. len:21 al:6
....................AGUGuACUUUUCUCAGGAUGA.................................................. len:21 al:16
....................AGUGCACaUUUCUCAGGAUGAA................................................. len:22 al:3
.....................GUGCACUUUUCUCAGGAUGAA................................................. len:21 al:40
.....................GUGCACUUUUCUCAGGAUGAu................................................. len:21 al:2
.....................GUGCACUUUUCUCAGGAUa................................................... len:19 al:1
.....................GUGCACUUUUCUCAGGAUGAAa................................................ len:22 al:2
.....................GUGCACUUUUCUCAGGAUGgA................................................. len:21 al:1
.....................GUGCACUUUUCUCAGGAUGA.................................................. len:20 al:1
.....................GUGCACUUUUCUCAGGAU.................................................... len:18 al:6
.....................GUGCACUUUUCUCAGGAUG................................................... len:19 al:10
.....................GUGCACUUUUCUCAGGAgGAA................................................. len:21 al:1
.....................GUGCACUUUUCUCAGGAUGAAc................................................ len:22 al:1
.....................GUGCACUUUUCUCAGGAaGAA................................................. len:21 al:1
.....................GUGCACUUUUCUCAGGAUGAAU................................................ len:22 al:4
......................UGCACUUUUCUCAGGAUGAAa................................................ len:21 al:1
......................UGCACUUUUCUCAGGAUGAA................................................. len:20 al:12
......................UGCACUUUUCUCAGGAUGAu................................................. len:20 al:3
......................UGCACUUUUCUCAGGAUGA.................................................. len:19 al:4
.......................GCACUUUUCUCAGGAUGAA................................................. len:19 al:1
........................aACUUUUCUCAGGAUGAA................................................. len:18 al:1
..........................CUUUUCUCAGGAUGgAUU............................................... len:18 al:1
.................................................CUUCUUGAGAAAAUUUCACCCAu................... len:23 al:6
.................................................CUUCUUGAGAAAAUUUCACCC..................... len:21 al:4
.................................................CUUCUUGAGAAAAUUUCACCCAuU.................. len:24 al:7
.................................................CUUCUUGAGAAAAUUUCACCCA.................... len:22 al:33
.................................................CUUCUUGAGAAAAUUUCACCCACU.................. len:24 al:2
.................................................CUUCUUGgGAAAAUUUCACCCA.................... len:22 al:1
.................................................CUUCUUGAGAAAAUUUCACCa..................... len:21 al:4
.................................................CUUCUUGAGAAAAUUUCACCCu.................... len:22 al:2
.................................................CUUCUUGAGAAAAUUUCACCCg.................... len:22 al:4
.................................................CUUCUUGAGAAAAUUUCACCu..................... len:21 al:1
..................................................UUCUUGAGAAAAUUUCACCCACc.................. len:23 al:1