Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000016l:7795508-7795602 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/D-Apul/output/11-Apul-sRNA-ShortStack-pulchra_genome/ShortStack_out/strucVis/Cluster_10051.ps.pdf
Locus Name: Cluster_10051
UAGAAAAUGUGGGAUGAGUGCCUGGGUGUCAUCUAUUAUGUUUUUGCUUGUUAAAACAUAAAAGAUGGCACCAGACAUUCAUCUCAAAAACUUGG
.........(((((((((((.((((.((((((((.(((((((((........))))))))).)))))))))))).)))))))))))......... (-41.10)
.AGAAAAUGUGGGAUGAGUGCa......................................................................... len:21 al:2
.AGAAAAUGUGGGAUGAGUGCC......................................................................... len:21 al:1
..GAAAAUGUGGGAUGAGUGCu......................................................................... len:20 al:3
..GAAAAUGUGGGAUGAGUGCC......................................................................... len:20 al:3
...AAAAUGUGGGAUGAGUGCg......................................................................... len:19 al:1
...AAAAUGUGGGAUGAGUGCa......................................................................... len:19 al:4
...AAAAUGUGGGAUGAGUGCu......................................................................... len:19 al:2
...AAAAUGUGGGAUGAGUGCC......................................................................... len:19 al:2
....AAAUGUGGGAUGAGUGCa......................................................................... len:18 al:1
....AAAUGUGGGAUGAGUGCC......................................................................... len:18 al:8
....AAAUGUGGGAUGAGUGCu......................................................................... len:18 al:5
.....AAUGUGGGAUGAGUGCCa........................................................................ len:18 al:1
....................uCUGGGUGUCAUCUAUUAUGUUUUU.................................................. len:25 al:1
.....................aUGGGUGUCAUCUAUUAUGUUUU................................................... len:23 al:1
.....................CUGGGUGUCAUCUgUUAUGUUU.................................................... len:22 al:1
.....................CUGGGUGUCAUCUAUUAUGUUUUU.................................................. len:24 al:1
.....................aUGGGUGUCAUCUAUUAUGUUUUU.................................................. len:24 al:1
.....................CgGGGUGUCAUCUAUUAUGUUUUU.................................................. len:24 al:1
.....................CUGGGUGUCAUCUAUUAUGUUU.................................................... len:22 al:2
.....................CUGGGUGUCAUCUAUUAUGUUUU................................................... len:23 al:4
......................UGGGUGUCAUCUAUUAUGUUaU................................................... len:22 al:17
......................UGGGUGUCAUCUAUUAUGUUcUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUU..................................................... len:20 al:81
......................UGGGUGUCAUCUAUUAcGUUUUU.................................................. len:23 al:7
......................UGGGUGUCAUuUAUUAUGUUUU................................................... len:22 al:7
......................UGGGUGUCAUCUAUUAUGcUUU................................................... len:22 al:42
......................UGGGUGUCAUCUgUUAUGUUU.................................................... len:21 al:4
......................UaGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:4
......................UGGGUGUCAUCUAUUAaGUUUU................................................... len:22 al:4
......................UGGGUGUCAUCUAUUAUaUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:755
......................UGGGUGUCAUCUAUgAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCUAgUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUaUUU.................................................. len:23 al:1
......................UGGGUGUCAUCgAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAcUAUGUUU.................................................... len:21 al:2
......................UGuGUGUCAUCUAUUAUGUUUU................................................... len:22 al:7
......................UGGGUGUCAUCUAUUAUGUUUUUc................................................. len:24 al:4
......................UGaGUGUCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUaAUCUAUUAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCUAUUgUGUUUU................................................... len:22 al:53
......................UGGGUGcCAUCUAUUAUGUUU.................................................... len:21 al:3
......................cGGGUGUCAUCUAUUAUGU...................................................... len:19 al:2
......................UGGGUGUCAUCUAUUAUGUUcU................................................... len:22 al:142
......................UGGGUGUCAUCUAUUAcGUUUU................................................... len:22 al:45
......................UGGGUGUCAUCUcUUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAaUAUGUUU.................................................... len:21 al:1
......................UGGGUaUCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAUUAUcUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGUUUcU.................................................. len:23 al:1
......................UGGGUGUCAcCUAUUAUGUUU.................................................... len:21 al:3
......................UGGGUGUCgUCUAUUAUGUUU.................................................... len:21 al:4
......................UGGGUGUCAUCUAUUAUGUUUc................................................... len:22 al:1763
......................UGGGUGUCAUCUAUUAUGUgUU................................................... len:22 al:5
......................UGaGUGUCAUCUAUUAUGUUUU................................................... len:22 al:24
......................UGGGcGUCAUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAUaAUGUUUU................................................... len:22 al:2
......................cGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGGGUGUCAUCUAUUAUGaUU.................................................... len:21 al:1
......................aGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGaGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................cGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:3
......................UGGGUGUCAUCUAUUAUGUUUUUu................................................. len:24 al:26
......................UGGGcGUCAUCUAUUAUGUUUU................................................... len:22 al:72
......................UGGGUGUCAUCUAUUAUG....................................................... len:18 al:2
......................UGGGUGUCAUCaAUUAUGUU..................................................... len:20 al:1
......................UGGaUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUa.................................................... len:21 al:16
......................UGGGUGUCAUCUAUUAUGUUc.................................................... len:21 al:116
......................UGGGUGUuAUCUAUUAUGUUUU................................................... len:22 al:16
......................UGGGUGUCAUCUAUUuUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUUgU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUaU...................................................... len:19 al:1
......................gGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:37
......................UGGGUGUCAUCUgUUAUGUUUU................................................... len:22 al:36
......................UGGGaGUCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UuGGUGUCAUCUAUUAUGUU..................................................... len:20 al:1
......................UGGaUGUCAUCUAUUAUGUUUU................................................... len:22 al:7
......................UGGGUuUCAUCUAUUAUGUUUU................................................... len:22 al:5
......................UGGGUGUCAUCUAUUAUGUcU.................................................... len:21 al:4
......................UGGGUGUCAgCUAUUAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCcAUUAUGUUUU................................................... len:22 al:36
......................UGGGUGaCAUCUAUUAUGUUUU................................................... len:22 al:10
......................UGGGUGUCAUCUAUUcUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUGa............................................ len:29 al:1
......................UGGGUGUCAUCUAUaAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAcCUAUUAUGUUUU................................................... len:22 al:63
......................UGGGUGUCAUCUAUUAUGgUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGc...................................................... len:19 al:15
......................UGGGUGUCAUCaAUUAUGUUUU................................................... len:22 al:4
......................UGGGUGUCAUCUAUUAUGUUUUg.................................................. len:23 al:2
......................UGGGUGaCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGGGUGUCAUCUAUUgUGUUU.................................................... len:21 al:1
......................UGGGUGcCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGcU..................................................... len:20 al:1
......................UGGGUGUCAUCUAUUAUGgU..................................................... len:20 al:1
......................UGGGUcUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUgUGUUUUU.................................................. len:23 al:4
......................UGGuUGUCAUCUAUUAUGUUUU................................................... len:22 al:1
......................aGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:4
......................UGGGUGUCAUCUAUUAUGUUUa................................................... len:22 al:176
......................UGGGUaUCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGUUg.................................................... len:21 al:1
......................UuGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:56
......................UaGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCuUCUAUUAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCUAUUAUGUc..................................................... len:20 al:22
......................UGGGUGUCAUCUAUcAUGUUU.................................................... len:21 al:1
......................UGGaUGUCAUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAUUAUc....................................................... len:18 al:1
......................UGGGUGUCAUCUAUUAUuUUUU................................................... len:22 al:8
......................UGGGUGgCAUCUAUUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGgUUUU.................................................. len:23 al:3
......................UGGGUGcCAUCUAUUAUGUUUU................................................... len:22 al:86
......................UGGcUGUCAUCUAUUAUGUUUU................................................... len:22 al:1
......................UuGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:4
......................UGGGUGUuAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGGGUGUCAUCUAUUAUGUUUaU.................................................. len:23 al:28
......................UGGGUGUCAUCaAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGgUUU................................................... len:22 al:12
......................UGGGUGUCAUCUAUUAcGUUU.................................................... len:21 al:1
......................UGGGUGUCAaCUAUUAUGUUUU................................................... len:22 al:3
......................UaGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:46
......................UGGGUGUCAgCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGUaU.................................................... len:21 al:1
......................aGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:87
......................UGGGcGUCAUCUAUUAUGUU..................................................... len:20 al:2
......................UGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:18199
......................UGGGUGUCAUCUAUUAUGa...................................................... len:19 al:2
......................gGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................cGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:74
......................UGGGUGUCAUCUAUUAUGUaUU................................................... len:22 al:4
......................UGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1306
......................UGGGUaUCAUCUAUUAUGUUUU................................................... len:22 al:23
......................UGuGUGUCAUCUAUUAUGUU..................................................... len:20 al:1
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUc............................................. len:28 al:1
......................UGGGUGUCAUCUAUUAUGUUUg................................................... len:22 al:57
......................UGGGUGUCAUCUAUUAUGU...................................................... len:19 al:85
......................UcGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:4
......................UGGGUGUCAcCUAUUAUGUUUUU.................................................. len:23 al:4
......................UuGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUgU................................................... len:22 al:49
......................UGGGUGUCAUCUAUUAUGUUUUc.................................................. len:23 al:130
......................UGGGUaUCAUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUuUUAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUGU............................................ len:29 al:4
......................UGGGUGUCAUCUAUUAUGUa..................................................... len:20 al:5
......................UGGGUGUCAUCUAUUAUGaUUU................................................... len:22 al:6
......................UGGGUGUCAUaUAUUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUaUUUU................................................... len:22 al:8
......................UGGGUGUCgUCUAUUAUGUUUU................................................... len:22 al:88
......................UGGGUGUCgUCUAUUAUGUU..................................................... len:20 al:2
......................UGGGUGUCgUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGcGUCAUCUAUUAUGUUUUU.................................................. len:23 al:6
......................UGGGUGUCAUCUAaUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGUcUU................................................... len:22 al:42
......................UGGGUGUCAUuUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCcUCUAUUAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCUAUUAgGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUUUUa................................................. len:24 al:3
......................UGGGUGUCAUCUAUUAUGUUUUa.................................................. len:23 al:105
......................UGGGUGUCAUCcAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGaGUCAUCUAUUAUGUUUU................................................... len:22 al:14
......................UGGGUGUCAUCcAUUAUGUUU.................................................... len:21 al:2
......................UGGGUaUCAUCUAUUAUGUU..................................................... len:20 al:1
......................UGaGUGUCAUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAcUAUGUUUU................................................... len:22 al:50
......................UGGGUGUCAUCUAUUAUGcUUUU.................................................. len:23 al:4
......................gGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:4
......................UGGGUGUCAUCUAUcAUGUUUU................................................... len:22 al:27
......................aGGGUGUCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAUUAUGcUU.................................................... len:21 al:4
......................UGGGgGUCAUCUAUUAUGUUUU................................................... len:22 al:7
......................UGGGUGUCAUCUAUUAUGg...................................................... len:19 al:1
.......................uGGUGUCAUCUAUUAUGUUU.................................................... len:20 al:1
.......................uGGUGUCAUCUAUUAUGUUUU................................................... len:21 al:7
.......................GGGUGUCAUCUAUUAUGUUUU................................................... len:21 al:2
.......................GGGUGUCAUCUAUUAUGUUUc................................................... len:21 al:2
.......................GGGUGUCgUCUAUUAUGUUUUU.................................................. len:22 al:1
.........................GUGUCAUCUAUUAUGUUUU................................................... len:19 al:1
....................................................AAAACAUAAAAGAUGGCACu....................... len:20 al:1
....................................................AAAACgUAAAAGAUGGCACC....................... len:20 al:1
......................................................AACAUAAAAGAUGGCACuAGAC................... len:22 al:19
......................................................AACAUAAAAGAUGGCACuAGACA.................. len:23 al:2
......................................................AACAUAAAAGAUGGCACCAGAu................... len:22 al:7
......................................................AACAUAAAAGAUGGCACu....................... len:18 al:145
......................................................AACAUAAAAGAUGGCACCAG..................... len:20 al:1
......................................................AACAUAAAAGAUGGCACCAGACu.................. len:23 al:1
......................................................AACAUAAAAGAUGGCACuAGA.................... len:21 al:82
......................................................AACAUAAAAGAUGGCACg....................... len:18 al:6
......................................................AACAUAAAAGAUGGCACa....................... len:18 al:9
......................................................AACAUAAAAGAUGGCACCAGu.................... len:21 al:4
......................................................AACAUAAAAGAUGGCACuAG..................... len:20 al:8
......................................................AACAUAAAAGAUGGCACCAGAaA.................. len:23 al:2
......................................................AACAUAAAAGAUGGCACCAGA.................... len:21 al:3
......................................................AACAUAAAAGAUGGCACC....................... len:18 al:28
.......................................................ACAUAAAAGAUGGCACu....................... len:17 al:1