Settings:
  Output files: "../output/07.2-Apul-Hisat/Apulcra-genome.index.*.ht2"
  Line rate: 7 (line is 128 bytes)
  Lines per side: 1 (side is 128 bytes)
  Offset rate: 4 (one in 16)
  FTable chars: 10
  Strings: unpacked
  Local offset rate: 3 (one in 8)
  Local fTable chars: 6
  Local sequence length: 57344
  Local sequence overlap between two consecutive indexes: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  ../data/Apulcra-genome.fa
Reading reference sizes
  Time reading reference sizes: 00:00:04
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:02
  Time to read SNPs and splice sites: 00:00:01
Generation 0 (518464064 -> 518464064 nodes, 0 ranks)
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 8
RESIZED NODES: 0
MADE NEW NODES: 1
Generation 1 (518614210 -> 518614210 nodes, 0 ranks)
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 8
RESIZED NODES: 0
MADE NEW NODES: 1
Generation 2 (518914510 -> 518914510 nodes, 0 ranks)
COUNTED NEW NODES: 1
COUNTED TEMP NODES: 0
RESIZED NODES: 7
RESIZED NODES: 0
MADE NEW NODES: 1
Generation 3 (519515646 -> 519515646 nodes, 0 ranks)
BUILT FROM_INDEX: 1
COUNTED NEW NODES: 1
COUNTED TEMP NODES: 0
RESIZED NODES: 8
RESIZED NODES: 0
MADE NEW NODES: 1
RESIZE NODES: 17
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 1
1 22667951
2 21279994
1 14381100
5 10522560
3 18584080
6 15994803
2 14321274
5 9940042
2 16899372
1 14400206
37 12710947
2 13532166
6 16124027
3 13021998
7 11378310
6 10794530
2 13512253
1 10856211
37 11193169
2 12161472
6 15024696
3 14247613
6 10568175
2 9465875
6 12207771
2 16625993
37 11746814
2 12475633
1 10006230
5 10488710
2 11211445
1 9578803
5 10446209
1 7182823
1 7074696
1 10356386
5 11682092
1 11286100
1 12431874
1 22336951
0 0
0 0
0 0
0 0
2 1
16 1
45 1
83 1
FINISHED RECURSIVE SORTS: 4
SORT NODES: 6
MERGE, UPDATE RANK: 12
Generation 4 (520721358 -> 520154430 nodes, 264742891 ranks)
ALLOCATE FROM_TABLE: 9
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 2
11 11560675
11 11577658
11 11596458
11 11578386
11 11594321
11 11552660
11 11577421
11 11584231
11 11596053
11 11561141
11 11571180
11 11586364
11 11569403
11 11562299
11 11571063
10 10531557
10 10521362
10 10516853
10 10523509
10 10508478
10 10500718
10 10504450
10 10550746
10 10534545
10 10528421
10 10517757
10 10539239
10 10508315
10 10503152
10 10526154
10 10532275
10 10504068
10 10516582
10 10545950
10 10515604
10 10539071
10 10533725
10 10535889
10 10515452
10 10550456
10 10530911
10 10511413
10 10523315
10 10492968
10 10542320
10 10513917
10 10539008
10 9756937
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 1
COUNTED NEW NODES: 2
COUNTED TEMP NODES: 0
RESIZED NODES: 0
RESIZED NODES: 0
MADE NEW NODES: 3
MERGEUPDATERANK: 9
TOTAL TIME: 29
Generation 5 (520656422 -> 520270430 nodes, 357421480 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 2
11 11565376
11 11580843
11 11597455
11 11580087
11 11594201
11 11555482
11 11581006
11 11586095
11 11598241
11 11565132
11 11573968
11 11587817
11 11570347
11 11567016
11 11572905
10 10533453
10 10523488
10 10519114
10 10527631
10 10512543
10 10504931
10 10506823
10 10550091
10 10535782
10 10531263
10 10520742
10 10541863
10 10511356
10 10507491
10 10530078
10 10533819
10 10507360
10 10520068
10 10547292
10 10520632
10 10540152
10 10534817
10 10536944
10 10517598
10 10550947
10 10532915
10 10516368
10 10525114
10 10495991
10 10542120
10 10516593
10 10540695
10 9758385
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 1
COUNTED TEMP NODES: 0
RESIZED NODES: 0
RESIZED NODES: 0
MADE NEW NODES: 2
MERGEUPDATERANK: 8
TOTAL TIME: 18
Generation 6 (520563564 -> 520465205 nodes, 408601196 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 2
11 11572114
11 11585683
11 11600908
11 11583431
11 11596479
11 11559492
11 11586470
11 11590378
11 11602621
11 11569285
11 11578214
11 11591492
11 11572533
11 11573089
11 11576655
10 10537088
10 10527422
10 10522507
10 10533412
10 10517777
10 10509535
10 10510010
10 10552076
10 10539212
10 10535718
10 10524820
10 10546145
10 10515425
10 10512836
10 10535765
10 10536771
10 10511466
10 10524970
10 10551297
10 10526670
10 10543695
10 10538011
10 10540137
10 10521334
10 10554081
10 10536478
10 10523752
10 10528122
10 10499708
10 10544143
10 10520635
10 10544311
10 9761032
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 9
RESIZED NODES: 0
MADE NEW NODES: 2
MERGEUPDATERANK: 7
TOTAL TIME: 25
Generation 7 (520751259 -> 520646504 nodes, 447241210 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11579129
11 11590707
11 11603490
11 11586773
11 11598464
11 11563587
11 11591705
11 11594729
11 11605872
11 11573025
11 11582476
11 11595057
11 11574564
11 11578133
11 11579792
10 10539981
10 10530936
10 10524943
10 10538597
10 10523085
10 10513263
10 10513096
10 10553986
10 10542277
10 10540297
10 10529489
10 10549761
10 10519015
10 10518458
10 10539814
10 10539635
10 10515434
10 10528713
10 10555129
10 10532487
10 10547498
10 10540124
10 10543080
10 10524925
10 10557051
10 10539647
10 10530821
10 10530493
10 10503831
10 10545506
10 10524900
10 10547403
10 9765326
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 1
COUNTED NEW NODES: 1
COUNTED TEMP NODES: 0
RESIZED NODES: 9
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 5
TOTAL TIME: 22
Generation 8 (520898308 -> 520805607 nodes, 472837373 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 3
11 11586193
11 11595846
11 11605276
11 11590443
11 11600120
11 11567561
11 11595012
11 11598393
11 11607725
11 11576598
11 11586332
11 11598456
11 11576400
11 11581626
11 11583685
10 10542645
10 10533382
10 10527162
10 10542867
10 10528315
10 10515717
10 10516266
10 10555874
10 10543979
10 10546136
10 10533677
10 10553477
10 10522687
10 10522354
10 10543540
10 10541999
10 10519768
10 10530266
10 10557163
10 10536841
10 10551406
10 10541441
10 10545664
10 10528460
10 10558075
10 10542052
10 10537074
10 10531307
10 10508544
10 10546199
10 10530109
10 10549060
10 9772435
FINISHED RECURSIVE SORTS: 1
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 1
COUNTED TEMP NODES: 0
RESIZED NODES: 7
RESIZED NODES: 0
MADE NEW NODES: 2
MERGEUPDATERANK: 4
TOTAL TIME: 21
Generation 9 (521038890 -> 520962281 nodes, 489429515 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11592332
11 11600158
11 11606010
11 11597469
11 11600517
11 11570764
11 11597995
11 11602447
11 11608737
11 11579739
11 11590432
11 11603892
11 11577948
11 11584709
11 11586881
10 10544442
10 10535180
10 10529639
10 10547755
10 10533952
10 10517211
10 10518879
10 10556828
10 10544270
10 10556194
10 10537105
10 10556735
10 10526889
10 10526634
10 10546167
10 10544924
10 10524756
10 10531689
10 10558125
10 10541349
10 10553300
10 10542735
10 10547177
10 10531899
10 10557747
10 10544276
10 10541240
10 10531327
10 10515152
10 10546971
10 10536814
10 10551283
10 9783607
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 9
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 4
TOTAL TIME: 21
Generation 10 (521216790 -> 521145128 nodes, 500447506 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11593566
11 11606323
11 11606123
11 11609356
11 11600439
11 11573107
11 11601078
11 11606597
11 11608440
11 11582794
11 11593159
11 11610560
11 11579916
11 11590535
11 11591187
10 10545425
10 10537587
10 10532640
10 10550056
10 10540572
10 10518148
10 10520882
10 10556796
10 10545669
10 10574373
10 10539749
10 10559658
10 10530890
10 10529454
10 10547618
10 10548224
10 10527918
10 10533259
10 10558028
10 10547744
10 10556496
10 10543518
10 10548758
10 10536162
10 10557957
10 10546458
10 10545815
10 10530681
10 10526596
10 10547453
10 10549410
10 10554296
10 9803658
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 8
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 4
TOTAL TIME: 20
Generation 11 (521452029 -> 521368817 nodes, 508241068 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11592929
11 11612803
11 11606556
11 11628077
11 11600246
11 11575969
11 11604907
11 11608773
11 11607963
11 11587149
11 11599549
11 11621436
11 11582988
11 11598657
11 11595948
10 10546576
10 10540497
10 10533387
10 10551979
10 10543593
11 11568083
10 10528071
10 10555358
10 10546462
10 10606019
10 10543485
10 10558171
10 10535518
10 10532442
10 10546816
10 10549841
10 10528597
10 10540731
10 10559447
10 10553546
10 10558413
10 10545920
10 10545661
10 10543301
10 10556470
10 10552861
10 10550085
10 10528626
10 10536817
10 10549351
10 10571601
10 10552485
9 8784657
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 8
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 3
TOTAL TIME: 19
Generation 12 (521781777 -> 521668059 nodes, 513842279 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 3
11 11592484
11 11618498
11 11606556
11 11654195
11 11600246
11 11579104
11 11610278
11 11612849
11 11607963
11 11593388
11 11607741
11 11637030
11 11589132
11 11610824
11 11604140
10 10548624
10 10546641
10 10535851
10 10557521
10 10543671
11 11568083
10 10530528
10 10555358
10 10546421
10 10665565
10 10542053
10 10558186
10 10548121
10 10530551
10 10545719
10 10551889
10 10533046
10 10543291
10 10559447
10 10557724
10 10560742
10 10545389
10 10547702
10 10546297
10 10556470
10 10553993
10 10558570
10 10528626
10 10540395
10 10549351
10 10603303
10 10555703
9 8828800
FINISHED RECURSIVE SORTS: 1
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 9
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 3
TOTAL TIME: 20
Generation 13 (522161938 -> 521997960 nodes, 517764179 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11592484
11 11621360
11 11606556
11 11680176
11 11600246
11 11583380
11 11611924
11 11617203
11 11607963
11 11600153
11 11616412
11 11661727
11 11597851
11 11619599
11 11614448
10 10552720
10 10555324
11 11593443
10 10559689
10 10541754
10 10515886
10 10536061
10 10555358
10 10546421
10 10768415
10 10546149
10 10558186
10 10558275
10 10530551
10 10545719
10 10551289
10 10536048
10 10547582
10 10559447
10 10561838
10 10562154
10 10545389
10 10548339
10 10544523
10 10556470
10 10556452
10 10557593
10 10528626
10 10534811
10 10549351
10 10638069
10 10563895
9 8860651
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 7
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 2
TOTAL TIME: 17
Generation 14 (522528028 -> 522346221 nodes, 520735761 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 3
11 11592484
11 11621231
11 11606556
11 11703587
11 11600246
11 11580532
11 11611924
11 11617203
11 11607963
11 11605805
11 11618083
11 11701458
11 11590571
11 11630393
11 11618554
10 10557262
10 10560963
11 11593443
10 10559689
10 10542999
10 10515886
10 10528531
10 10555358
10 10544987
10 10944085
10 10549121
10 10558186
10 10561904
10 10530551
10 10545719
10 10551289
10 10538131
10 10548313
10 10559447
10 10561834
10 10562154
10 10545389
10 10548339
10 10544523
10 10556470
10 10560526
10 10561027
10 10528626
10 10533189
10 10549351
10 10682967
10 10576164
9 8883208
FINISHED RECURSIVE SORTS: 1
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 7
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 4
TOTAL TIME: 19
Generation 15 (522880049 -> 522624644 nodes, 522077441 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 3
11 11592484
11 11621153
11 11606556
11 11697816
11 11600246
11 11577462
11 11611924
11 11615014
11 11607963
11 11612190
11 11618083
10 10694829
11 11594305
11 11637383
11 11604100
11 11614196
10 10560963
11 11593443
10 10559689
10 10542999
11 11564462
10 10528535
10 10556463
10 10543293
10 11199719
10 10552225
10 10554028
10 10559950
10 10534605
10 10543691
10 10556268
10 10531696
10 10550378
10 10560997
10 10557704
10 10555655
10 10549767
10 10543148
10 10548691
10 10560547
10 10543995
10 10558210
10 10524289
10 10526225
10 10550437
10 10693980
9 9522178
9 8890710
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 6
BUILD INDEX: 1
COUNTED NEW NODES: 1
COUNTED TEMP NODES: 0
RESIZED NODES: 6
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 3
TOTAL TIME: 18
Generation 16 (523254062 -> 522863003 nodes, 522430433 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11592484
11 11621153
11 11606556
11 11697816
11 11600246
11 11577462
11 11611924
11 11615014
11 11607963
11 11612190
11 11618083
10 10683753
11 11594305
11 11637383
11 11604100
11 11614196
11 11616892
10 10537514
10 10559689
10 10542999
11 11564462
10 10528535
10 10556463
10 10543293
10 11449154
10 10552225
10 10554028
10 10559950
10 10534605
10 10543691
10 10556268
10 10531696
10 10550378
10 10560997
10 10557704
10 10555655
10 10549767
10 10543148
10 10548691
10 10560547
10 10543995
10 10558210
10 10524289
10 10526225
10 10550437
10 10693980
9 9522178
9 8890710
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 7
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 3
TOTAL TIME: 18
Generation 17 (523600742 -> 523190679 nodes, 522823649 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 3
11 11592484
11 11621153
11 11606556
11 11697816
11 11600246
11 11577462
11 11611924
11 11615014
11 11607963
11 11612190
11 11618083
11 11739172
11 11590571
11 11636364
11 11610368
11 11621520
10 10552634
11 11591882
10 10559358
10 10542106
10 10511318
10 10528535
10 10556463
10 10543293
9 10723246
10 10549121
10 10558186
10 10561904
10 10530551
10 10545719
10 10551289
10 10538131
10 10548313
10 10559447
10 10556577
10 10562154
10 10545389
10 10548339
10 10544523
10 10556470
10 10547037
10 10556471
10 10528626
10 10525954
10 10549351
10 10690833
10 10577863
9 8890710
FINISHED RECURSIVE SORTS: 1
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 9
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 3
TOTAL TIME: 20
Generation 18 (524106071 -> 523739763 nodes, 523503818 ranks)
ALLOCATE FROM_TABLE: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 3
11 11592484
11 11621153
11 11606556
11 11697816
11 11600246
11 11577462
11 11611924
11 11615014
11 11607963
11 11612190
11 11618083
11 11739172
11 11590571
11 11636364
11 11610368
11 11621520
11 11603921
10 10540595
10 10559358
10 10542106
11 11559905
10 10534275
10 10556278
10 11569414
10 11298994
10 10555009
10 10549581
10 10561668
10 10538970
10 10539182
10 10557314
10 10530876
10 10551794
10 10558829
10 10561035
10 10555942
10 10548943
10 10545404
10 10545109
10 10561635
10 10560452
10 10539650
10 10525183
10 10526354
10 10547789
9 9642424
9 9522178
9 8890710
FINISHED RECURSIVE SORTS: 2
BUILD TABLE: 5
BUILD INDEX: 2
COUNTED NEW NODES: 0
COUNTED TEMP NODES: 0
RESIZED NODES: 8
RESIZED NODES: 0
MADE NEW NODES: 1
MERGEUPDATERANK: 3
TOTAL TIME: 19
Generation 19 (524491977 -> 524232346 nodes, 524232346 ranks)
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 2
11 11592484
11 11621153
11 11606556
11 11697816
11 11600246
11 11577462
11 11611924
11 11615014
11 11607963
11 11612190
11 11618083
11 11739172
11 11590571
11 11636364
11 11610368
11 11621520
11 11603921
10 10540595
10 10559358
10 10542106
11 11559905
10 10534275
10 10556278
10 11759353
9 10548295
10 10552225
10 10554028
10 10559950
10 10534605
10 10543691
10 10556268
10 10531696
10 10550378
10 10560997
10 10557704
10 10555655
10 10549767
10 10543148
10 10548691
10 10560547
10 10543995
10 10558210
10 10524289
10 10526225
10 10550437
10 10693980
9 9522178
9 8890710
FINISHED RECURSIVE SORTS: 2
Generating edges... 
NODE.TO -> GENOME POS: 2
BUILD FROM_INDEX 2
COUNTED NEW EDGES: 1
MADE NEW EDGES: 7
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 0
9 3632425
9 3554680
8 3344008
9 3576576
9 3572576
8 3560955
9 3626761
9 3323035
9 3306987
9 3459841
9 3327667
9 3419921
9 3364144
9 3459832
10 3509849
9 3375334
10 3434370
11 3560686
11 3466419
11 3278948
12 3589830
12 3490257
11 3322363
12 3433978
11 3267884
11 3277183
11 3528834
10 3248407
11 3468643
11 3392235
10 3281867
11 3389273
11 3301395
11 3365590
11 3298440
11 3286020
11 3389151
11 3279020
12 3144652
12 3062063
11 3083680
12 3276519
12 3126259
11 3147561
13 3066650
12 2972891
11 2927647
9 2508403
FINISHED RECURSIVE SORTS: 1
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 0
10 2265623
10 2308994
10 2370071
9 2139379
10 2228922
11 2312054
10 2275762
9 2167643
9 2122486
9 2171310
9 2180992
9 2265384
10 2117181
9 2195752
10 2333104
9 2187478
11 2158989
10 2136714
10 2179100
11 2216748
10 2167557
11 2136665
11 2090030
10 2184984
11 2303956
13 2170126
12 2185293
13 2065218
12 2137221
14 2138046
13 2059637
12 2123557
12 2077159
12 2182131
11 2169613
12 2163094
10 2014237
9 2132627
9 2022506
10 2047862
10 2094615
9 1976838
11 2150745
10 1931626
9 1908765
10 2014188
10 2019999
9 1634654
FINISHED RECURSIVE SORTS: 1
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 0
10 2172018
10 2166799
12 2227675
10 2188185
12 2140592
11 2244018
10 2173304
11 2219138
10 2309268
10 2273969
11 2176531
11 2296693
10 2116970
12 2144138
10 2168526
10 2168701
10 2112201
10 2180187
10 2302481
10 2256016
10 2219972
10 2222858
10 2272306
10 2152158
10 2156640
11 2220758
11 2203048
10 2206991
10 2148092
11 2233475
10 2131707
10 2068473
10 2005933
11 2174653
10 2026570
10 1994934
11 2108938
11 2113025
11 2062288
10 1939697
11 2085925
10 1994118
10 1907346
11 1975481
11 1976222
10 1897147
11 1994832
9 1682403
FINISHED RECURSIVE SORTS: 0
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 1
17 3378012
16 3434333
16 3364974
15 3491923
15 3532266
16 3369747
16 3358354
14 3461164
15 3553090
12 3345457
12 3565022
11 3427544
11 3608718
11 3524320
11 3529306
10 3288777
11 3534946
10 3248261
10 3439487
10 3470543
9 3241952
10 3427202
9 3405221
10 3279513
10 3604755
9 3340121
9 3440524
9 3320665
9 3315151
9 3382653
9 3215152
9 3224983
9 3228657
9 3373165
8 3130499
9 3288285
9 3421157
9 3273663
9 3353050
9 3346219
8 3167321
8 3147683
7 3023509
7 2966835
8 3222538
7 2864776
7 2774737
7 2746064
FINISHED RECURSIVE SORTS: 0
SORTED NEW EDGES: 9
COUNT NUMBER IN EACH BIN: 1
FINISHED FIRST ROUND: 2
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
11 11534336
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10485760
10 10430106
FINISHED RECURSIVE SORTS: 2
RE-SORTED NODES: 12
PROCESS EDGES: 3
REMOVE Y: 2
COUNT NUMBER IN EACH BIN: 0
FINISHED FIRST ROUND: 0
11 11534682
11 11534925
11 11535153
11 11535802
11 11534858
11 11535961
11 11543175
11 11539025
11 11544942
11 11551838
11 11537066
11 11535383
11 11535297
11 11535315
11 11536185
11 11541820
11 11538246
11 11540360
11 11548166
11 11536537
10 10489868
10 10496381
10 10496414
10 10488136
10 10487952
10 10488917
10 10487512
10 10487699
10 10489974
10 10491458
10 10487512
10 10487897
10 10487742
10 10486047
10 10487554
10 10486140
10 10486868
10 10486211
10 10486267
10 10486200
10 10486350
10 10486330
10 10486400
10 10486592
10 10486652
10 10486831
10 10486614
10 10430785
FINISHED RECURSIVE SORTS: 2
SORT, Make index: 10
TOTAL: 48
Allocating ftab, absorbFtab
Entering GFM loop
Exited GFM loop
fchr[A]: 0
fchr[C]: 160081709
fchr[G]: 262718344
fchr[T]: 364931744
fchr[$]: 524384038
Exiting GFM::buildToDisk()
Returning from initFromVector
Wrote 326897143 bytes to primary GFM file: ../output/07.2-Apul-Hisat/Apulcra-genome.index.1.ht2
Wrote 131058092 bytes to secondary GFM file: ../output/07.2-Apul-Hisat/Apulcra-genome.index.2.ht2
Re-opening _in1 and _in2 as input streams
Returning from GFM constructor
Warning: a local graph exploded (offset: 13925001, length: 57344)
Warning: a local graph exploded (offset: 38659720, length: 57344)
Warning: a local graph exploded (offset: 38603400, length: 57344)
Warning: a local graph exploded (offset: 41948817, length: 57344)
Warning: a local graph exploded (offset: 115973349, length: 57344)
Warning: a local graph exploded (offset: 125396706, length: 57344)
Warning: a local graph exploded (offset: 132961805, length: 57344)
Warning: a local graph exploded (offset: 132961805, length: 57344)
Warning: a local graph exploded (offset: 169175565, length: 57344)
Warning: a local graph exploded (offset: 171282211, length: 57344)
Warning: a local graph exploded (offset: 184461091, length: 57344)
Warning: a local graph exploded (offset: 209498906, length: 57344)
Warning: a local graph exploded (offset: 209498906, length: 57344)
Warning: a local graph exploded (offset: 219411226, length: 57344)
Warning: a local graph exploded (offset: 219411226, length: 57344)
Warning: a local graph exploded (offset: 219411226, length: 57344)
Warning: a local graph exploded (offset: 219411226, length: 57344)
Warning: a local graph exploded (offset: 302771998, length: 57344)
Warning: a local graph exploded (offset: 302771998, length: 57344)
Warning: a local graph exploded (offset: 358471409, length: 57344)
Warning: a local graph exploded (offset: 358471409, length: 57344)
Warning: a local graph exploded (offset: 358471409, length: 57344)
Warning: a local graph exploded (offset: 392037709, length: 57344)
Warning: a local graph exploded (offset: 515228365, length: 56507)
Returning from initFromVector
Wrote 350535931 bytes to primary GFM file: ../output/07.2-Apul-Hisat/Apulcra-genome.index.5.ht2
Wrote 132185422 bytes to secondary GFM file: ../output/07.2-Apul-Hisat/Apulcra-genome.index.6.ht2
Re-opening _in5 and _in5 as input streams
Returning from HGFM constructor
Headers:
    len: 518313916
    gbwtLen: 524384039
    nodes: 524232345
    sz: 259156958
    gbwtSz: 262192020
    lineRate: 7
    offRate: 4
    offMask: 0xfffffff0
    ftabChars: 10
    eftabLen: 0
    eftabSz: 0
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 32764522
    offsSz: 131058088
    lineSz: 128
    sideSz: 128
    sideGbwtSz: 104
    sideGbwtLen: 208
    numSides: 2521078
    numLines: 2521078
    gbwtTotLen: 322697984
    gbwtTotSz: 322697984
    reverse: 0
    linearFM: No
Total time for call to driver() for forward index: 00:14:21