FastQCFastQC Report
Thu 6 Feb 2025
467_S5_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename467_S5_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences254550683
Total Bases38.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC29

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCAAAATAAACAACTTTTTCTACAAAATACCATACACTAAAATTTTAA3463370.13605816960231845No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)