[2023-11-27 09:19:41,418] multiqc [DEBUG ] This is MultiQC v1.12 [2023-11-27 09:19:41,418] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2023-11-27 09:19:41,418] multiqc [DEBUG ] No MultiQC config found: /home/shared/8TB_HDD_02/mewing0/.multiqc_config.yaml [2023-11-27 09:19:41,418] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-27 09:19:41,418] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc . [2023-11-27 09:19:41,825] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-27 09:19:41,825] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc . [2023-11-27 09:19:41,825] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_02/mewing0/clamgonads-macsamples/output/fastQC-output [2023-11-27 09:19:41,825] multiqc [DEBUG ] Template : default [2023-11-27 09:19:41,825] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2023-11-27 09:19:41,826] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-11-27 09:19:41,827] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpvjr87q2p [2023-11-27 09:19:41,911] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/mewing0/clamgonads-macsamples/output/fastQC-output [2023-11-27 09:19:41,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-C-226_R1_001_fastqc.html [2023-11-27 09:19:41,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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09:19:42,679] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-T-7_R2_001_fastqc.html [2023-11-27 09:19:42,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-T-7_R2_001_fastqc.html [2023-11-27 09:19:42,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-T-235_R2_001_fastqc.html [2023-11-27 09:19:42,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-235_R2_001_fastqc.html [2023-11-27 09:19:42,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-T-235_R2_001_fastqc.html [2023-11-27 09:19:42,730] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-T-235_R2_001_fastqc.html [2023-11-27 09:19:42,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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limit: M-C-329_R1_001_fastqc.html [2023-11-27 09:19:42,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-C-360_R1_001_fastqc.html [2023-11-27 09:19:42,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-C-360_R1_001_fastqc.html [2023-11-27 09:19:42,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-C-360_R1_001_fastqc.html [2023-11-27 09:19:42,963] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-C-360_R1_001_fastqc.html [2023-11-27 09:19:42,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-C-360_R1_001_fastqc.html [2023-11-27 09:19:42,963] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-C-360_R1_001_fastqc.html [2023-11-27 09:19:42,963] multiqc [DEBUG ] File ignored by 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09:19:43,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-T-20_R1_001_fastqc.html [2023-11-27 09:19:43,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-20_R1_001_fastqc.html [2023-11-27 09:19:43,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-T-20_R1_001_fastqc.html [2023-11-27 09:19:43,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-T-20_R1_001_fastqc.html [2023-11-27 09:19:43,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-T-20_R1_001_fastqc.html [2023-11-27 09:19:43,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-T-20_R1_001_fastqc.html [2023-11-27 09:19:43,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize 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pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,390] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-T-235_R1_001_fastqc.html [2023-11-27 09:19:44,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-T-20_R2_001_fastqc.html [2023-11-27 09:19:44,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-20_R2_001_fastqc.html [2023-11-27 09:19:44,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,513] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,513] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,513] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,513] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,513] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-C-358_R1_001_fastqc.html [2023-11-27 09:19:44,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-C-329_R2_001_fastqc.html [2023-11-27 09:19:44,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-T-44_R2_001_fastqc.html [2023-11-27 09:19:44,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-44_R2_001_fastqc.html [2023-11-27 09:19:44,614] multiqc [DEBUG ] File 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M-T-44_R2_001_fastqc.html [2023-11-27 09:19:44,617] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-T-44_R2_001_fastqc.html [2023-11-27 09:19:44,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-T-44_R2_001_fastqc.html [2023-11-27 09:19:44,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-C-337_R2_001_fastqc.html [2023-11-27 09:19:44,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-C-337_R2_001_fastqc.html [2023-11-27 09:19:44,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-C-337_R2_001_fastqc.html [2023-11-27 09:19:44,659] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-C-337_R2_001_fastqc.html [2023-11-27 09:19:44,659] multiqc [DEBUG ] File ignored by 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limit: M-C-337_R2_001_fastqc.html [2023-11-27 09:19:44,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,686] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-T-18_R1_001_fastqc.html [2023-11-27 09:19:44,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,716] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-C-334_R2_001_fastqc.html [2023-11-27 09:19:44,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,765] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,765] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-C-339_R1_001_fastqc.html [2023-11-27 09:19:44,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,810] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,810] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:44,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: M-T-31_R1_001_fastqc.html [2023-11-27 09:19:49,381] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-27 09:19:49,381] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-27 09:19:54,758] multiqc.modules.fastqc.fastqc [INFO ] Found 60 reports [2023-11-27 09:19:56,526] multiqc [INFO ] Compressing plot data [2023-11-27 09:19:57,027] multiqc [INFO ] Report : multiqc_report.html [2023-11-27 09:19:57,027] multiqc [INFO ] Data : multiqc_data [2023-11-27 09:19:57,027] multiqc [DEBUG ] Moving data file from '/tmp/tmpvjr87q2p/multiqc_data' to '/home/shared/8TB_HDD_02/mewing0/clamgonads-macsamples/output/fastQC-output/multiqc_data' [2023-11-27 09:19:57,086] multiqc [INFO ] MultiQC complete [2023-11-27 09:19:57,087] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers