Index of /seashell/bu-github/clamgonads-macsamples/output

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]0513-DEG.tab 2024-08-30 13:51 8.6K 
[ ]0709-DeSeq_AllCounts..>2024-08-30 13:51 4.5M 
[ ]0709-DeSeq_AllCounts..>2024-08-30 13:51 2.1M 
[ ]0725-DEG_filtered.tab 2024-08-30 13:51 11K 
[ ]0725-DEG_filteredbyg..>2024-08-30 13:51 11K 
[IMG]0725-DEG_heatmap_10r..>2024-08-30 13:51 132K 
[IMG]0725-DEG_heatmap_10r..>2024-08-30 13:51 133K 
[IMG]0725-DEG_heatmap_10r..>2024-08-30 13:51 241K 
[ ]0725-DEGstats_filter..>2024-08-30 13:51 11K 
[ ]0725-DeSeq_AllCounts..>2024-08-30 13:51 1.9M 
[IMG]0725-heatmap_all_DEG..>2024-08-30 13:51 150K 
[TXT]0725-logcounts_allDE..>2024-08-30 13:51 42K 
[TXT]0725-logcounts_filte..>2024-08-30 13:51 290  
[ ]0727-DEGlist.tab 2024-08-30 13:51 1.1K 
[ ]0727-DEGnames.tab 2024-08-30 13:51 1.1K 
[ ]0727-DEGnames_filter..>2024-08-30 13:51 1.0K 
[ ]0727-DEGnames_filter..>2024-08-30 13:51 494  
[ ]0727-DEGnames_filter..>2024-08-30 13:51 1.1K 
[ ]0727-DeSeq_AllCounts..>2024-08-30 13:51 1.7M 
[ ]0727-deseqres_filter..>2024-08-30 13:51 1.7M 
[IMG]0730-DEG_heatmap_rec..>2024-08-30 13:51 114K 
[ ]0730-annot_stats_cou..>2024-08-30 13:51 39K 
[TXT]0730-logcounts_recur..>2024-08-30 13:51 16K 
[ ]0730-post_filter_rec..>2024-08-30 13:51 2.6K 
[ ]0730-post_filter_sim..>2024-08-30 13:51 5.9K 
[IMG]0731-DEG_heatmap_10r..>2024-08-30 13:51 223K 
[IMG]0731-DEG_heatmap_10r..>2024-08-30 13:51 222K 
[IMG]0731-DEG_heatmap_10r..>2024-08-30 13:51 136K 
[ ]0731-DEGstats_filter..>2024-08-30 13:51 9.5K 
[ ]0731-DEGstats_filter..>2024-08-30 13:51 4.7K 
[TXT]0731-logcounts_allDE..>2024-08-30 13:51 38K 
[TXT]0731-logcounts_allDE..>2024-08-30 13:51 20K 
[TXT]0731-logcounts_filte..>2024-08-30 13:51 290  
[IMG]0807-DEG_heatmap_8in..>2024-08-30 13:51 152K 
[IMG]0807-DEG_heatmap_8in..>2024-08-30 13:51 155K 
[IMG]0807-DEG_heatmap_10i..>2024-08-30 13:51 222K 
[IMG]0807-DEG_heatmap_10i..>2024-08-30 13:51 222K 
[IMG]0807-DEG_heatmap_10i..>2024-08-30 13:51 172K 
[IMG]0807-DEG_heatmap_10i..>2024-08-30 13:51 174K 
[IMG]0807-DEG_heatmap_10r..>2024-08-30 13:51 222K 
[IMG]0807-DEG_heatmap_10r..>2024-08-30 13:51 222K 
[IMG]0807-DEG_heatmap_10r..>2024-08-30 13:51 222K 
[IMG]0807-DEG_heatmap_10r..>2024-08-30 13:51 222K 
[IMG]0807-DEG_heatmap_10r..>2024-08-30 13:51 222K 
[ ]0807-DEGnames_ToC_8i..>2024-08-30 13:51 689  
[ ]0807-DEGnames_ToC_8i..>2024-08-30 13:51 598  
[ ]0807-DEGnames_ToC_10..>2024-08-30 13:51 767  
[ ]0807-DEGnames_ToC_10..>2024-08-30 13:51 767  
[ ]0807-DEGnames_ToC_10..>2024-08-30 13:51 702  
[ ]0807-DEGstats_ToC_8i..>2024-08-30 13:51 6.6K 
[ ]0807-DEGstats_ToC_8i..>2024-08-30 13:51 5.7K 
[ ]0807-DEGstats_ToC_10..>2024-08-30 13:51 7.3K 
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[ ]0807-DEGstats_ToC_10..>2024-08-30 13:51 6.7K 
[ ]0807-deseqres_ToC_8i..>2024-08-30 13:51 1.6M 
[ ]0807-deseqres_ToC_8i..>2024-08-30 13:51 1.3M 
[ ]0807-deseqres_ToC_10..>2024-08-30 13:51 1.5M 
[ ]0807-deseqres_ToC_10..>2024-08-30 13:51 1.4M 
[ ]0807-deseqres_ToC_10..>2024-08-30 13:51 1.2M 
[IMG]0807-histogram_of_re..>2024-08-30 13:51 52K 
[IMG]0807-histogram_of_re..>2024-08-30 13:51 52K 
[TXT]0807-logcounts_allDE..>2024-08-30 13:51 24K 
[TXT]0807-logcounts_allDE..>2024-08-30 13:51 40K 
[TXT]0807-logcounts_allDE..>2024-08-30 13:51 28K 
[TXT]0807-logcounts_allDE..>2024-08-30 13:51 39K 
[TXT]0807-logcounts_allDE..>2024-08-30 13:51 40K 
[TXT]0807-logcounts_allDE..>2024-08-30 13:51 40K 
[ ]0817-rphil_blastout_..>2024-08-30 13:51 7.4M 
[ ]0821-DEG_blast_cds_f..>2024-08-30 13:51 43K 
[ ]0821-rphil_blast_cds..>2024-08-30 13:51 30M 
[TXT]0821-uniprot_id_cds_..>2024-08-30 13:51 189K 
[ ]0826-DEG_blast_cds_f..>2024-08-30 13:51 39K 
[DIR]14-gene-annotation/ 2024-08-30 18:17 -  
[ ]1213-DEG.tab 2024-08-30 13:51 9.2K 
[DIR]@eaDir/ 2024-08-31 07:12 -  
[ ]DEG_Blast_Full_Resul..>2024-08-30 13:51 7.7K 
[ ]DEG_annotations.tab 2024-08-30 13:51 4.5K 
[ ]DEG_blast_cds_full.tab 2024-08-30 13:51 114K 
[ ]DEG_blast_cds_full_0..>2024-08-30 13:51 42K 
[ ]DEG_filtered_blast_c..>2024-08-30 13:51 20K 
[ ]GCF_026571515.1.tab 2024-08-30 13:51 3.2M 
[ ]M-C-216.bam 2024-04-23 09:42 3.6G 
[ ]M-C-218.bam 2024-04-23 09:46 3.4G 
[ ]M-C-226.bam 2024-04-23 09:53 5.0G 
[ ]M-C-306.bam 2024-04-23 09:57 3.6G 
[ ]M-C-329.bam 2024-04-23 10:01 3.6G 
[ ]M-C-334.bam 2024-04-23 10:05 3.3G 
[ ]M-C-337.bam 2024-04-23 10:11 3.8G 
[ ]M-C-339.bam 2024-04-23 10:15 3.4G 
[ ]M-C-358.bam 2024-04-23 10:19 3.6G 
[ ]M-C-360.bam 2024-04-23 10:27 5.3G 
[ ]M-C-363.bam 2024-04-23 10:33 3.9G 
[ ]M-C-373.bam 2024-04-23 10:37 3.8G 
[ ]M-C-482.bam 2024-04-23 10:41 3.5G 
[ ]M-C-488.bam 2024-04-23 10:45 3.5G 
[ ]M-T-7.bam 2024-04-23 11:57 4.7G 
[ ]M-T-8.bam 2024-04-23 12:07 3.6G 
[ ]M-T-18.bam 2024-04-23 10:49 3.6G 
[ ]M-T-20.bam 2024-04-23 10:55 4.1G 
[ ]M-T-22.bam 2024-04-23 10:59 3.6G 
[ ]M-T-29.bam 2024-04-23 11:13 3.8G 
[ ]M-T-31.bam 2024-04-23 11:17 3.5G 
[ ]M-T-32.bam 2024-04-23 11:23 4.3G 
[ ]M-T-43.bam 2024-04-23 11:37 5.3G 
[ ]M-T-44.bam 2024-04-23 11:44 3.9G 
[ ]M-T-83.bam 2024-04-23 12:03 4.0G 
[ ]M-T-235.bam 2024-04-23 11:03 3.6G 
[ ]M-T-245.bam 2024-04-23 11:07 3.0G 
[ ]M-T-399.bam 2024-04-23 11:30 4.2G 
[ ]M-T-500.bam 2024-04-23 11:50 3.9G 
[ ]blast_out_gene_level..>2024-08-30 13:51 350  
[TXT]blast_out_gene_level..>2024-08-30 13:51 6.7M 
[ ]blast_out_gene_level..>2024-08-30 13:51 6.7M 
[ ]blast_out_gene_level..>2024-08-30 13:51 9.4M 
[IMG]boxplot_of_all_read_..>2024-08-30 13:51 39K 
[IMG]boxplot_of_all_read_..>2024-08-30 13:51 121K 
[IMG]boxplot_of_read_coun..>2024-08-30 13:51 151K 
[TXT]cds_from_genomic_hea..>2024-08-30 13:51 18M 
[TXT]clam_GO_annotations.csv2024-08-30 13:51 20K 
[ ]clam_GO_annotations.tab2024-08-30 13:51 19K 
[TXT]clam_GO_annotations_..>2024-08-30 13:51 370K 
[TXT]clam_GO_annotations_..>2024-08-30 13:51 18K 
[TXT]counts_annot_all-071..>2024-08-30 13:51 29K 
[DIR]fastQC-output/ 2024-08-30 13:51 -  
[ ]featurecounts_gene 2024-08-30 13:51 19M 
[ ]featurecounts_gene.s..>2024-08-30 13:51 3.1K 
[TXT]goterm_annot_id.csv 2024-08-30 13:51 3.6K 
[IMG]heatmap_all_DEGs_fil..>2024-08-30 13:51 108K 
[IMG]heatmap_top25_DEGs.png 2024-08-30 13:51 38K 
[DIR]hisat/ 2024-04-19 15:26 -  
[TXT]kallisto.isoform.TMM..>2024-04-19 15:17 0  
[ ]kallisto.isoform.TPM..>2024-04-19 15:17 589  
[ ]kallisto.isoform.TPM..>2024-08-30 13:51 532  
[ ]kallisto.isoform.cou..>2024-08-30 13:51 469  
[ ]kallisto.matrix.tab 2024-08-30 13:51 5.7M 
[DIR]kallisto/ 2024-08-30 13:51 -  
[TXT]log_counts_all.csv 2024-08-30 13:51 11K 
[TXT]log_counts_all_filte..>2024-08-30 13:51 11K 
[TXT]log_counts_top.csv 2024-08-30 13:51 11K 
[TXT]log_counts_top_filte..>2024-08-30 13:51 11K 
[ ]readme 2024-08-30 13:51 50  
[ ]readme.md 2024-08-30 13:51 2.1K 
[ ]rphil_blast_cds.tab 2024-08-30 13:51 18M 
[TXT]rphil_blastout_cds.tab 2024-08-30 13:51 0  
[TXT]top_counts_GO.csv 2024-08-30 13:51 71K 
[TXT]uniprot_id.txt 2024-08-30 13:51 287  
[TXT]uniprot_id_cds.txt 2024-08-30 13:51 1.4K 
[TXT]uniprot_id_cds_full.txt2024-08-30 13:51 274K 
[TXT]uniprot_id_cds_genel..>2024-08-30 13:51 406  
[TXT]uniprot_id_cds_genel..>2024-08-30 13:51 406  
[TXT]uniprot_id_cds_genel..>2024-08-30 13:51 125K 
[TXT]uniprot_id_cds_genel..>2024-08-30 13:51 91  
[TXT]uniprot_id_cds_no_NA..>2024-08-30 13:51 1.2K