---
title: "md5sumcheck on raw files"
output: html_document
date: "2023-11-15"
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

### Checking file integrity via MD5sums

```{bash}

pwd
```

moving to the folder with the files we want to check (make sure both R console and terminal are set to the proper directory)

```{bash}

cd ../data/raw
pwd 

```

retrieving md5sum check file from our online location

```{bash}

wget https://gannet.fish.washington.edu/mewing0/Man_clam_raw/check_md5s.sh -P ../data/raw/
```

```{bash}

cd ../data/raw
pwd
! md5sum -c --quiet "check_md5s.sh"

```