chr NC_035780.1 (65668440 bp)
chr NC_035781.1 (61752955 bp)
chr NC_035782.1 (77061148 bp)
chr NC_035783.1 (59691872 bp)
chr NC_035784.1 (98698416 bp)
chr NC_035785.1 (51258098 bp)
chr NC_035786.1 (57830854 bp)
chr NC_035787.1 (75944018 bp)
chr NC_035788.1 (104168038 bp)
chr NC_035789.1 (32650045 bp)
chr NC_007175.2 (17244 bp)

Number of paired-end alignments with a unique best hit:	5263477
Mapping efficiency:	16.4%

Sequence pairs with no alignments under any condition:	24901496
Sequence pairs did not map uniquely:	1920397
Sequence pairs which were discarded because genomic sequence could not be extracted:	13

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	1421695	((converted) top strand)
GA/CT/CT:	1213974	(complementary to (converted) top strand)
GA/CT/GA:	1208589	(complementary to (converted) bottom strand)
CT/GA/GA:	1419206	((converted) bottom strand)

Sample CF01-CM01-Zygote processed successfully.