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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.24.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-11-21, 10:33 PST based on data in:

        General Statistics

        Showing 32/32 rows and 1/2 columns.
        Sample Name% Aligned
        CF01-CM01-Zygote_PE_report
        12.8%
        CF01-CM02-Larvae_PE_report
        35.9%
        CF02-CM02-Zygote_PE_report
        13.9%
        CF03-CM03-Zygote_PE_report
        25.6%
        CF03-CM04-Larvae_PE_report
        46.1%
        CF03-CM05-Larvae_PE_report
        34.0%
        CF04-CM04-Zygote_PE_report
        25.1%
        CF05-CM02-Larvae_PE_report
        35.2%
        CF05-CM05-Zygote_PE_report
        25.3%
        CF06-CM01-Zygote_PE_report
        23.5%
        CF06-CM02-Larvae_PE_report
        22.7%
        CF07-CM02-Zygote_PE_report
        11.5%
        CF08-CM03-Zygote_PE_report
        18.9%
        CF08-CM04-Larvae_PE_report
        0.9%
        CF08-CM05-Larvae_PE_report
        2.1%
        EF01-EM01-Zygote_PE_report
        21.9%
        EF02-EM02-Zygote_PE_report
        23.6%
        EF03-EM03-Zygote_PE_report
        16.4%
        EF03-EM04-Larvae_PE_report
        30.4%
        EF03-EM05-Larvae_PE_report
        28.2%
        EF04-EM04-Zygote_PE_report
        8.6%
        EF04-EM05-Larvae_PE_report
        37.1%
        EF05-EM01-Larvae_PE_report
        29.2%
        EF05-EM05-Zygote_PE_report
        7.3%
        EF05-EM06-Larvae_PE_report
        34.3%
        EF06-EM01-Larvae_PE_report
        34.0%
        EF06-EM02-Larvae_PE_report
        36.5%
        EF06-EM06-Larvae_PE_report
        24.9%
        EF07-EM01-Zygote_PE_report
        10.8%
        EF07-EM03-Larvae_PE_report
        32.5%
        EF08-EM03-Larvae_PE_report
        38.2%
        EF08-EM04-Larvae_PE_report
        36.0%

        Bismark

        Version: 0.24.2

        Maps bisulfite converted sequence reads and determine cytosine methylation states.URL: http://www.bioinformatics.babraham.ac.uk/projects/bismarkDOI: 10.1093/bioinformatics/btr167

        Alignment Rates

        Created with MultiQC

        Strand Alignment

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Bismark0.24.2

        MultiQC v1.24.1 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.