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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.14

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-11-15, 06:16 PST based on data in: /home/shared/8TB_HDD_01/sam/gitrepos/ceasmallr/output/02.20-bismark-methylation-extraction

        General Statistics

        Showing 32/32 rows and 4/4 columns.
        Sample Name% mCpG% mCHG% mCHHM C's
        CF01-CM01-Zygote_R1_001
        17.9%
        2.6%
        4.1%
        47.0
        CF01-CM02-Larvae_R1_001
        17.8%
        2.2%
        3.3%
        695.6
        CF02-CM02-Zygote_R1_001
        20.1%
        5.2%
        8.0%
        209.0
        CF03-CM03-Zygote_R1_001
        20.3%
        3.1%
        5.2%
        351.7
        CF03-CM04-Larvae_R1_001
        17.3%
        1.7%
        2.2%
        587.5
        CF03-CM05-Larvae_R1_001
        19.1%
        3.5%
        4.5%
        642.8
        CF04-CM04-Zygote_R1_001
        18.8%
        2.8%
        4.2%
        385.9
        CF05-CM02-Larvae_R1_001
        17.1%
        1.7%
        2.5%
        912.5
        CF05-CM05-Zygote_R1_001
        20.8%
        3.4%
        4.9%
        479.9
        CF06-CM01-Zygote_R1_001
        21.5%
        4.1%
        5.9%
        380.1
        CF06-CM02-Larvae_R1_001
        24.3%
        5.9%
        8.1%
        332.1
        CF07-CM02-Zygote_R1_001
        18.2%
        2.2%
        4.6%
        248.7
        CF08-CM03-Zygote_R1_001
        19.2%
        3.8%
        6.2%
        228.2
        CF08-CM04-Larvae_R1_001
        18.2%
        3.0%
        13.6%
        6.9
        CF08-CM05-Larvae_R1_001
        15.0%
        2.2%
        5.8%
        6.6
        EF01-EM01-Zygote_R1_001
        24.1%
        5.4%
        7.2%
        362.6
        EF02-EM02-Zygote_R1_001
        15.3%
        2.1%
        3.3%
        406.9
        EF03-EM03-Zygote_R1_001
        21.2%
        4.5%
        6.4%
        215.4
        EF03-EM04-Larvae_R1_001
        21.7%
        5.4%
        6.6%
        578.4
        EF03-EM05-Larvae_R1_001
        19.9%
        3.9%
        4.9%
        610.0
        EF04-EM04-Zygote_R1_001
        17.6%
        5.1%
        6.2%
        115.1
        EF04-EM05-Larvae_R1_001
        16.8%
        1.7%
        2.3%
        844.1
        EF05-EM01-Larvae_R1_001
        18.8%
        2.4%
        3.2%
        489.0
        EF05-EM05-Zygote_R1_001
        13.0%
        2.4%
        4.2%
        69.3
        EF05-EM06-Larvae_R1_001
        19.3%
        5.3%
        6.3%
        906.4
        EF06-EM01-Larvae_R1_001
        16.9%
        1.9%
        2.4%
        842.6
        EF06-EM02-Larvae_R1_001
        19.8%
        2.9%
        3.8%
        613.9
        EF06-EM06-Larvae_R1_001
        20.5%
        4.6%
        6.5%
        130.4
        EF07-EM01-Zygote_R1_001
        15.4%
        2.0%
        4.0%
        164.0
        EF07-EM03-Larvae_R1_001
        17.4%
        1.8%
        2.6%
        640.1
        EF08-EM03-Larvae_R1_001
        18.0%
        1.7%
        2.4%
        738.9
        EF08-EM04-Larvae_R1_001
        19.4%
        2.8%
        3.9%
        572.1

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Cytosine Methylation

        loading..

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        loading..

        MultiQC v1.14 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.