CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 240923 613731 28.19 854654 2 323214 1035012 23.80 1358226 3 306883 1162463 20.89 1469346 4 220828 954377 18.79 1175205 5 151311 1222714 11.01 1374025 6 116910 777552 13.07 894462 7 112630 693008 13.98 805638 8 125580 758737 14.20 884317 9 132277 755104 14.91 887381 10 142159 718117 16.52 860276 11 153683 760549 16.81 914232 12 166670 761617 17.95 928287 13 168671 759712 18.17 928383 14 168515 758503 18.18 927018 15 169607 746778 18.51 916385 16 172162 761096 18.45 933258 17 187178 783574 19.28 970752 18 172945 769747 18.35 942692 19 167702 734552 18.59 902254 20 173752 747269 18.87 921021 21 175060 765309 18.62 940369 22 174956 765647 18.60 940603 23 174939 759168 18.73 934107 24 176891 773159 18.62 950050 25 178245 772928 18.74 951173 26 180080 762960 19.10 943040 27 178766 775918 18.73 954684 28 177971 768277 18.81 946248 29 178020 761795 18.94 939815 30 176300 770310 18.62 946610 31 176519 773783 18.58 950302 32 175504 762033 18.72 937537 33 175691 765125 18.67 940816 34 176616 759447 18.87 936063 35 177863 767057 18.82 944920 36 176018 804178 17.96 980196 37 173683 755090 18.70 928773 38 176761 771438 18.64 948199 39 175146 770687 18.52 945833 40 172672 744706 18.82 917378 41 176073 750229 19.01 926302 42 174395 756154 18.74 930549 43 172867 741297 18.91 914164 44 176723 750895 19.05 927618 45 171827 741069 18.82 912896 46 170032 731952 18.85 901984 47 170406 726945 18.99 897351 48 171204 737453 18.84 908657 49 169257 726363 18.90 895620 50 169345 737178 18.68 906523 51 166275 726080 18.63 892355 52 162391 717425 18.46 879816 53 162226 700258 18.81 862484 54 160542 708706 18.47 869248 55 159843 703013 18.52 862856 56 160215 699058 18.65 859273 57 159852 710715 18.36 870567 58 155318 689789 18.38 845107 59 155632 684636 18.52 840268 60 153828 689432 18.24 843260 61 150098 666155 18.39 816253 62 148687 653945 18.52 802632 63 148472 653924 18.50 802396 64 147140 651209 18.43 798349 65 145965 644831 18.46 790796 66 144556 646041 18.28 790597 67 146198 632314 18.78 778512 68 140999 630332 18.28 771331 69 140449 630300 18.22 770749 70 137767 614864 18.30 752631 71 136503 596734 18.62 733237 72 133795 595926 18.34 729721 73 132262 581244 18.54 713506 74 131498 577906 18.54 709404 75 128283 573484 18.28 701767 76 126150 562942 18.31 689092 77 124751 558058 18.27 682809 78 123790 553075 18.29 676865 79 121267 543690 18.24 664957 80 121030 540332 18.30 661362 81 118594 537535 18.07 656129 82 117343 524643 18.28 641986 83 116370 522363 18.22 638733 84 114751 525440 17.92 640191 85 110972 505046 18.01 616018 86 109403 501780 17.90 611183 87 109004 489641 18.21 598645 88 108864 490669 18.16 599533 89 105537 484703 17.88 590240 90 103628 481574 17.71 585202 91 102364 465480 18.03 567844 92 99696 459930 17.81 559626 93 99699 458342 17.87 558041 94 96421 437425 18.06 533846 95 93512 434600 17.71 528112 96 92652 429527 17.74 522179 97 89996 420307 17.64 510303 98 87708 414689 17.46 502397 99 86924 407572 17.58 494496 100 86122 399851 17.72 485973 101 85405 398830 17.64 484235 102 83406 397192 17.35 480598 103 81214 380293 17.60 461507 104 80694 374277 17.74 454971 105 79225 370109 17.63 449334 106 76988 364634 17.43 441622 107 75542 360138 17.34 435680 108 75196 362915 17.16 438111 109 73734 352183 17.31 425917 110 72201 344133 17.34 416334 111 71093 343073 17.17 414166 112 69525 332022 17.31 401547 113 70395 329493 17.60 399888 114 69257 323297 17.64 392554 115 67315 316752 17.53 384067 116 65588 315111 17.23 380699 117 63231 313253 16.80 376484 118 61298 303612 16.80 364910 119 61073 302925 16.78 363998 120 60288 293117 17.06 353405 121 59003 287765 17.02 346768 122 58571 283883 17.10 342454 123 57092 276651 17.11 333743 124 56799 271062 17.32 327861 125 58574 271342 17.75 329916 126 54940 265125 17.17 320065 127 53265 257819 17.12 311084 128 51868 254076 16.95 305944 129 50528 247957 16.93 298485 130 50025 244076 17.01 294101 131 49073 241599 16.88 290672 132 48326 237831 16.89 286157 133 47349 230180 17.06 277529 134 46130 226601 16.91 272731 135 45593 223915 16.92 269508 136 46731 221469 17.42 268200 137 46080 220047 17.32 266127 138 44314 215427 17.06 259741 139 44891 211421 17.51 256312 140 43509 210375 17.14 253884 141 41174 203717 16.81 244891 142 39691 196943 16.77 236634 143 38932 196343 16.55 235275 144 38699 193525 16.66 232224 145 38026 190910 16.61 228936 146 37282 189850 16.41 227132 147 38001 192291 16.50 230292 148 36320 184611 16.44 220931 149 35336 180763 16.35 216099 150 34045 176600 16.16 210645 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 322313 2395486 11.86 2717799 2 108935 752283 12.65 861218 3 98262 1214586 7.48 1312848 4 77923 1202712 6.08 1280635 5 25632 1790626 1.41 1816258 6 22868 2219422 1.02 2242290 7 18501 1318316 1.38 1336817 8 17871 1254128 1.40 1271999 9 17306 1266767 1.35 1284073 10 18298 1242720 1.45 1261018 11 20265 1274861 1.56 1295126 12 16714 1320267 1.25 1336981 13 16346 1342634 1.20 1358980 14 14660 1309486 1.11 1324146 15 15758 1283405 1.21 1299163 16 15568 1298488 1.18 1314056 17 14642 1310352 1.11 1324994 18 15293 1370879 1.10 1386172 19 13571 1281261 1.05 1294832 20 13728 1302414 1.04 1316142 21 13945 1292676 1.07 1306621 22 13335 1307564 1.01 1320899 23 13484 1314100 1.02 1327584 24 13517 1317280 1.02 1330797 25 13367 1333585 0.99 1346952 26 13011 1324880 0.97 1337891 27 13577 1327423 1.01 1341000 28 13503 1330889 1.00 1344392 29 13390 1316439 1.01 1329829 30 13377 1324178 1.00 1337555 31 13358 1317553 1.00 1330911 32 12971 1306902 0.98 1319873 33 13505 1323909 1.01 1337414 34 13267 1336491 0.98 1349758 35 13366 1340416 0.99 1353782 36 13155 1297241 1.00 1310396 37 13504 1334277 1.00 1347781 38 13101 1302377 1.00 1315478 39 13857 1335287 1.03 1349144 40 13083 1298553 1.00 1311636 41 13613 1327762 1.01 1341375 42 13604 1311209 1.03 1324813 43 13524 1312516 1.02 1326040 44 13077 1281584 1.01 1294661 45 13566 1277098 1.05 1290664 46 13307 1265261 1.04 1278568 47 13510 1246099 1.07 1259609 48 13720 1251105 1.08 1264825 49 13988 1270667 1.09 1284655 50 13993 1253204 1.10 1267197 51 14091 1242613 1.12 1256704 52 13905 1234496 1.11 1248401 53 13981 1229181 1.12 1243162 54 13982 1196835 1.15 1210817 55 14159 1222458 1.14 1236617 56 14049 1201869 1.16 1215918 57 14482 1191672 1.20 1206154 58 14192 1178803 1.19 1192995 59 14135 1164093 1.20 1178228 60 14521 1170953 1.22 1185474 61 14471 1173158 1.22 1187629 62 14218 1150787 1.22 1165005 63 14119 1118666 1.25 1132785 64 13890 1114952 1.23 1128842 65 14035 1108419 1.25 1122454 66 14033 1095356 1.26 1109389 67 14251 1103491 1.27 1117742 68 14253 1076122 1.31 1090375 69 14131 1066755 1.31 1080886 70 13857 1066990 1.28 1080847 71 13956 1038407 1.33 1052363 72 13758 1027616 1.32 1041374 73 13856 1017736 1.34 1031592 74 13609 1001149 1.34 1014758 75 13687 990329 1.36 1004016 76 13644 988086 1.36 1001730 77 13571 960386 1.39 973957 78 13295 946484 1.39 959779 79 13195 939833 1.38 953028 80 12972 917490 1.39 930462 81 13284 933794 1.40 947078 82 12962 895840 1.43 908802 83 12894 889018 1.43 901912 84 12796 874180 1.44 886976 85 12581 872952 1.42 885533 86 12370 850455 1.43 862825 87 12346 841483 1.45 853829 88 12290 826350 1.47 838640 89 12229 814781 1.48 827010 90 12279 814468 1.49 826747 91 12035 799090 1.48 811125 92 11685 781679 1.47 793364 93 11757 782124 1.48 793881 94 12019 792878 1.49 804897 95 11395 732123 1.53 743518 96 11197 720235 1.53 731432 97 11334 725513 1.54 736847 98 10888 701003 1.53 711891 99 10758 691360 1.53 702118 100 10726 684068 1.54 694794 101 10643 678931 1.54 689574 102 10915 705556 1.52 716471 103 10310 653125 1.55 663435 104 10268 639482 1.58 649750 105 9999 626592 1.57 636591 106 9756 613066 1.57 622822 107 9619 601252 1.57 610871 108 9590 594032 1.59 603622 109 9334 585029 1.57 594363 110 9473 573041 1.63 582514 111 8979 570013 1.55 578992 112 8959 563447 1.57 572406 113 8793 548480 1.58 557273 114 8950 543452 1.62 552402 115 8560 525629 1.60 534189 116 8414 514924 1.61 523338 117 8305 511246 1.60 519551 118 8268 502324 1.62 510592 119 8206 495182 1.63 503388 120 8064 485187 1.63 493251 121 7860 477561 1.62 485421 122 7768 466404 1.64 474172 123 7672 468189 1.61 475861 124 7642 451168 1.67 458810 125 7441 449202 1.63 456643 126 7465 436336 1.68 443801 127 7223 432598 1.64 439821 128 7188 422363 1.67 429551 129 6925 419278 1.62 426203 130 6818 405854 1.65 412672 131 6685 399016 1.65 405701 132 6758 397008 1.67 403766 133 6750 396370 1.67 403120 134 6532 388118 1.66 394650 135 6350 375588 1.66 381938 136 6246 371515 1.65 377761 137 6318 369442 1.68 375760 138 6256 363794 1.69 370050 139 5974 354449 1.66 360423 140 5993 342860 1.72 348853 141 5857 341902 1.68 347759 142 5815 337870 1.69 343685 143 5520 324696 1.67 330216 144 5531 325092 1.67 330623 145 5318 317908 1.65 323226 146 5364 319689 1.65 325053 147 5306 310073 1.68 315379 148 5569 302709 1.81 308278 149 5848 299014 1.92 304862 150 5983 296253 1.98 302236 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 589354 1721050 25.51 2310404 2 519065 2297357 18.43 2816422 3 428983 2144193 16.67 2573176 4 347074 2363887 12.80 2710961 5 153194 3088185 4.73 3241379 6 120670 3673609 3.18 3794279 7 133827 4454444 2.92 4588271 8 114761 4404849 2.54 4519610 9 116755 4110222 2.76 4226977 10 102868 4035722 2.49 4138590 11 113362 4008958 2.75 4122320 12 95946 4007491 2.34 4103437 13 105733 4127768 2.50 4233501 14 92909 4080069 2.23 4172978 15 105770 3979413 2.59 4085183 16 92426 3905074 2.31 3997500 17 100464 3852402 2.54 3952866 18 86551 3927471 2.16 4014022 19 100956 3978192 2.47 4079148 20 87088 4010379 2.13 4097467 21 96373 3850851 2.44 3947224 22 84664 3870695 2.14 3955359 23 96499 3879654 2.43 3976153 24 82020 3866989 2.08 3949009 25 93210 3935786 2.31 4028996 26 82438 3935693 2.05 4018131 27 91636 3915188 2.29 4006824 28 82551 3971449 2.04 4054000 29 91657 3995883 2.24 4087540 30 78558 3955687 1.95 4034245 31 89230 4014001 2.17 4103231 32 80028 3940840 1.99 4020868 33 84012 3939617 2.09 4023629 34 76447 3977078 1.89 4053525 35 82745 3934553 2.06 4017298 36 71977 3921065 1.80 3993042 37 80441 3937467 2.00 4017908 38 70439 3921215 1.76 3991654 39 77384 3885698 1.95 3963082 40 68177 3879482 1.73 3947659 41 75864 4016589 1.85 4092453 42 65164 3885031 1.65 3950195 43 75429 3882850 1.91 3958279 44 65076 3892225 1.64 3957301 45 72378 3884206 1.83 3956584 46 64346 3870041 1.64 3934387 47 71782 3877307 1.82 3949089 48 63423 3812891 1.64 3876314 49 70136 3835837 1.80 3905973 50 64042 3821886 1.65 3885928 51 68651 3786305 1.78 3854956 52 62540 3749417 1.64 3811957 53 66464 3730867 1.75 3797331 54 61450 3668471 1.65 3729921 55 65312 3641144 1.76 3706456 56 61610 3645565 1.66 3707175 57 63139 3598871 1.72 3662010 58 60560 3639300 1.64 3699860 59 64798 3624998 1.76 3689796 60 57386 3509497 1.61 3566883 61 61164 3496375 1.72 3557539 62 57855 3525149 1.61 3583004 63 59528 3395912 1.72 3455440 64 56088 3364642 1.64 3420730 65 59589 3334930 1.76 3394519 66 53764 3311730 1.60 3365494 67 59303 3335993 1.75 3395296 68 53902 3245344 1.63 3299246 69 56440 3264982 1.70 3321422 70 53781 3202473 1.65 3256254 71 55974 3142099 1.75 3198073 72 51691 3108612 1.64 3160303 73 54016 3103350 1.71 3157366 74 51973 3122977 1.64 3174950 75 52509 3014484 1.71 3066993 76 51091 2973162 1.69 3024253 77 50919 2958293 1.69 3009212 78 49853 2976109 1.65 3025962 79 50597 2927472 1.70 2978069 80 48797 2848188 1.68 2896985 81 48969 2816953 1.71 2865922 82 47685 2805962 1.67 2853647 83 48915 2706482 1.78 2755397 84 45581 2666522 1.68 2712103 85 46766 2638024 1.74 2684790 86 44461 2616662 1.67 2661123 87 45806 2563031 1.76 2608837 88 43852 2565916 1.68 2609768 89 45999 2537905 1.78 2583904 90 42310 2441685 1.70 2483995 91 44351 2424203 1.80 2468554 92 42542 2391747 1.75 2434289 93 42162 2350786 1.76 2392948 94 41507 2325486 1.75 2366993 95 41632 2305792 1.77 2347424 96 40183 2311567 1.71 2351750 97 40414 2270475 1.75 2310889 98 39682 2183003 1.79 2222685 99 38694 2141618 1.77 2180312 100 38810 2108644 1.81 2147454 101 38000 2086402 1.79 2124402 102 37236 2069324 1.77 2106560 103 38161 2071585 1.81 2109746 104 36455 2021216 1.77 2057671 105 36507 2022917 1.77 2059424 106 35389 1948202 1.78 1983591 107 35111 1909795 1.81 1944906 108 33540 1904013 1.73 1937553 109 34686 1839921 1.85 1874607 110 33078 1818691 1.79 1851769 111 33709 1828799 1.81 1862508 112 32346 1767194 1.80 1799540 113 32256 1729500 1.83 1761756 114 31447 1716433 1.80 1747880 115 31630 1678442 1.85 1710072 116 30865 1649747 1.84 1680612 117 30313 1622477 1.83 1652790 118 29611 1589765 1.83 1619376 119 29778 1569273 1.86 1599051 120 29256 1542514 1.86 1571770 121 28650 1517189 1.85 1545839 122 29024 1496541 1.90 1525565 123 27388 1460201 1.84 1487589 124 27519 1436607 1.88 1464126 125 27152 1412989 1.89 1440141 126 26036 1386192 1.84 1412228 127 26073 1373050 1.86 1399123 128 25443 1337043 1.87 1362486 129 25088 1316190 1.87 1341278 130 24527 1292555 1.86 1317082 131 25078 1282448 1.92 1307526 132 23536 1249033 1.85 1272569 133 23962 1228356 1.91 1252318 134 23114 1206415 1.88 1229529 135 22608 1183751 1.87 1206359 136 22326 1164140 1.88 1186466 137 22552 1151501 1.92 1174053 138 21766 1138500 1.88 1160266 139 21655 1112963 1.91 1134618 140 20684 1084445 1.87 1105129 141 20142 1067996 1.85 1088138 142 20712 1053673 1.93 1074385 143 19653 1034501 1.86 1054154 144 19767 1019092 1.90 1038859 145 19272 1003675 1.88 1022947 146 19211 989314 1.90 1008525 147 19001 977098 1.91 996099 148 19400 966073 1.97 985473 149 19951 953679 2.05 973630 150 19636 934883 2.06 954519 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 49373 155143 24.14 204516 2 65870 256992 20.40 322862 3 57931 252999 18.63 310930 4 45714 205530 18.20 251244 5 26815 258811 9.39 285626 6 20652 164185 11.17 184837 7 19451 144874 11.84 164325 8 21820 154538 12.37 176358 9 21810 148492 12.81 170302 10 23557 141306 14.29 164863 11 24781 143468 14.73 168249 12 27856 142460 16.36 170316 13 26309 141377 15.69 167686 14 25458 136365 15.73 161823 15 24960 131584 15.94 156544 16 25173 131572 16.06 156745 17 28959 138162 17.33 167121 18 24474 127773 16.08 152247 19 23990 122882 16.33 146872 20 23896 121540 16.43 145436 21 23474 121324 16.21 144798 22 23305 118447 16.44 141752 23 22360 114051 16.39 136411 24 22411 116115 16.18 138526 25 22578 116176 16.27 138754 26 22259 110831 16.72 133090 27 21692 110401 16.42 132093 28 20854 106195 16.41 127049 29 20095 104496 16.13 124591 30 20003 100938 16.54 120941 31 19474 102380 15.98 121854 32 19546 98494 16.56 118040 33 18569 97184 16.04 115753 34 18600 95353 16.32 113953 35 18339 95961 16.04 114300 36 17665 98529 15.20 116194 37 17787 91073 16.34 108860 38 17986 89758 16.69 107744 39 17156 89105 16.15 106261 40 16583 83997 16.49 100580 41 16807 84442 16.60 101249 42 16239 83725 16.24 99964 43 16048 81343 16.48 97391 44 16086 79983 16.74 96069 45 15296 78645 16.28 93941 46 14977 76602 16.35 91579 47 14918 74457 16.69 89375 48 14468 74275 16.30 88743 49 14628 73029 16.69 87657 50 13880 71202 16.31 85082 51 13753 71019 16.22 84772 52 13150 68972 16.01 82122 53 12980 66384 16.36 79364 54 12705 65820 16.18 78525 55 12519 65170 16.11 77689 56 12422 63996 16.26 76418 57 12470 64277 16.25 76747 58 12064 61490 16.40 73554 59 11817 60778 16.28 72595 60 11414 61078 15.75 72492 61 11201 57663 16.27 68864 62 10658 55877 16.02 66535 63 10744 55140 16.31 65884 64 10338 54281 16.00 64619 65 10455 54284 16.15 64739 66 10199 52887 16.17 63086 67 10470 52196 16.71 62666 68 9504 51131 15.67 60635 69 9557 51176 15.74 60733 70 9521 49257 16.20 58778 71 9301 47445 16.39 56746 72 9094 47402 16.10 56496 73 8861 46393 16.04 55254 74 8555 44822 16.03 53377 75 8580 44264 16.24 52844 76 8417 43505 16.21 51922 77 8112 43058 15.85 51170 78 7994 41537 16.14 49531 79 7845 40708 16.16 48553 80 7908 41447 16.02 49355 81 7629 40607 15.82 48236 82 7679 39280 16.35 46959 83 7585 38815 16.35 46400 84 7462 38309 16.30 45771 85 7308 37905 16.16 45213 86 6954 36398 16.04 43352 87 6867 35721 16.12 42588 88 7047 35807 16.44 42854 89 6781 35608 16.00 42389 90 6540 34560 15.91 41100 91 6496 33293 16.33 39789 92 6217 32868 15.91 39085 93 6308 33222 15.96 39530 94 6045 31017 16.31 37062 95 5857 30535 16.09 36392 96 5682 30880 15.54 36562 97 5588 29190 16.07 34778 98 5444 28858 15.87 34302 99 5512 28495 16.21 34007 100 5286 27869 15.94 33155 101 5360 28067 16.03 33427 102 5088 28132 15.32 33220 103 5018 26652 15.84 31670 104 4889 26184 15.73 31073 105 4902 25764 15.99 30666 106 4881 25529 16.05 30410 107 4575 24600 15.68 29175 108 4594 25178 15.43 29772 109 4418 24167 15.46 28585 110 4445 23618 15.84 28063 111 4268 23146 15.57 27414 112 4243 22438 15.90 26681 113 4135 22427 15.57 26562 114 4190 21979 16.01 26169 115 4163 21497 16.22 25660 116 3893 21578 15.28 25471 117 3759 21325 14.99 25084 118 3745 20818 15.25 24563 119 3682 20443 15.26 24125 120 3612 19545 15.60 23157 121 3569 19210 15.67 22779 122 3669 19286 15.98 22955 123 3401 18434 15.58 21835 124 3512 18516 15.94 22028 125 3714 18759 16.53 22473 126 3262 18177 15.22 21439 127 3186 17558 15.36 20744 128 3156 17041 15.63 20197 129 2989 16513 15.33 19502 130 2937 16462 15.14 19399 131 2997 16120 15.68 19117 132 2884 16197 15.11 19081 133 2784 15512 15.22 18296 134 2744 15287 15.22 18031 135 2633 15105 14.84 17738 136 2762 14803 15.72 17565 137 2690 14620 15.54 17310 138 2681 14435 15.66 17116 139 2623 14494 15.32 17117 140 2730 14433 15.91 17163 141 2415 13555 15.12 15970 142 2359 13262 15.10 15621 143 2321 13104 15.05 15425 144 2218 13008 14.57 15226 145 2318 12916 15.22 15234 146 2266 13382 14.48 15648 147 2326 13138 15.04 15464 148 2102 12359 14.54 14461 149 2161 12128 15.12 14289 150 1951 11874 14.11 13825 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74132 556733 11.75 630865 2 21985 173751 11.23 195736 3 20930 226217 8.47 247147 4 16480 263080 5.89 279560 5 5459 363759 1.48 369218 6 4729 440932 1.06 445661 7 4003 265970 1.48 269973 8 3694 248962 1.46 252656 9 3700 248988 1.46 252688 10 3969 232129 1.68 236098 11 4842 232307 2.04 237149 12 3370 237843 1.40 241213 13 3283 236192 1.37 239475 14 2896 227879 1.25 230775 15 3001 219854 1.35 222855 16 3152 214851 1.45 218003 17 2717 214263 1.25 216980 18 2748 228827 1.19 231575 19 2426 203765 1.18 206191 20 2343 208649 1.11 210992 21 2286 198299 1.14 200585 22 2128 194664 1.08 196792 23 2093 194125 1.07 196218 24 1985 187026 1.05 189011 25 1985 189323 1.04 191308 26 1905 186892 1.01 188797 27 1884 183159 1.02 185043 28 1852 180841 1.01 182693 29 1762 177413 0.98 179175 30 1697 177765 0.95 179462 31 1664 167175 0.99 168839 32 1594 161159 0.98 162753 33 1484 164170 0.90 165654 34 1480 163479 0.90 164959 35 1561 159966 0.97 161527 36 1477 152745 0.96 154222 37 1416 154487 0.91 155903 38 1376 148281 0.92 149657 39 1450 150134 0.96 151584 40 1307 141283 0.92 142590 41 1314 146174 0.89 147488 42 1301 140217 0.92 141518 43 1244 137998 0.89 139242 44 1195 131483 0.90 132678 45 1167 131073 0.88 132240 46 1177 126318 0.92 127495 47 1102 123588 0.88 124690 48 1133 123819 0.91 124952 49 1136 122868 0.92 124004 50 1104 119865 0.91 120969 51 1110 119787 0.92 120897 52 1087 114842 0.94 115929 53 1053 112836 0.92 113889 54 1017 107909 0.93 108926 55 1016 110043 0.91 111059 56 1042 108065 0.96 109107 57 993 105506 0.93 106499 58 921 101202 0.90 102123 59 909 98974 0.91 99883 60 970 100792 0.95 101762 61 939 99589 0.93 100528 62 918 98576 0.92 99494 63 931 92406 1.00 93337 64 851 90935 0.93 91786 65 917 90591 1.00 91508 66 879 88492 0.98 89371 67 837 89077 0.93 89914 68 825 86246 0.95 87071 69 817 84542 0.96 85359 70 759 84234 0.89 84993 71 763 81872 0.92 82635 72 807 80881 0.99 81688 73 769 79182 0.96 79951 74 766 76948 0.99 77714 75 768 75989 1.00 76757 76 720 75065 0.95 75785 77 723 72687 0.98 73410 78 668 70306 0.94 70974 79 708 70347 1.00 71055 80 652 68266 0.95 68918 81 681 69017 0.98 69698 82 583 65355 0.88 65938 83 601 67156 0.89 67757 84 626 63750 0.97 64376 85 603 62791 0.95 63394 86 588 61452 0.95 62040 87 608 60599 0.99 61207 88 544 59428 0.91 59972 89 544 58650 0.92 59194 90 561 58258 0.95 58819 91 557 56918 0.97 57475 92 553 55744 0.98 56297 93 530 57249 0.92 57779 94 564 57663 0.97 58227 95 529 52004 1.01 52533 96 480 50229 0.95 50709 97 503 50301 0.99 50804 98 466 48763 0.95 49229 99 422 48070 0.87 48492 100 434 47160 0.91 47594 101 484 47464 1.01 47948 102 485 50047 0.96 50532 103 404 45628 0.88 46032 104 442 44682 0.98 45124 105 431 42944 0.99 43375 106 396 42474 0.92 42870 107 391 41781 0.93 42172 108 422 40719 1.03 41141 109 390 39920 0.97 40310 110 400 38957 1.02 39357 111 382 38919 0.97 39301 112 386 38259 1.00 38645 113 323 37313 0.86 37636 114 376 37819 0.98 38195 115 348 35860 0.96 36208 116 329 34893 0.93 35222 117 331 35124 0.93 35455 118 364 34590 1.04 34954 119 337 33826 0.99 34163 120 335 32900 1.01 33235 121 342 32612 1.04 32954 122 291 31458 0.92 31749 123 291 31812 0.91 32103 124 288 30556 0.93 30844 125 333 31546 1.04 31879 126 290 29882 0.96 30172 127 279 29572 0.93 29851 128 264 28819 0.91 29083 129 290 28403 1.01 28693 130 275 27149 1.00 27424 131 241 27158 0.88 27399 132 251 26870 0.93 27121 133 260 26666 0.97 26926 134 271 26243 1.02 26514 135 207 25671 0.80 25878 136 243 25284 0.95 25527 137 244 24919 0.97 25163 138 227 24154 0.93 24381 139 230 23813 0.96 24043 140 187 23008 0.81 23195 141 221 22655 0.97 22876 142 204 22667 0.89 22871 143 223 22202 0.99 22425 144 219 22113 0.98 22332 145 188 21446 0.87 21634 146 220 21767 1.00 21987 147 231 21153 1.08 21384 148 221 20267 1.08 20488 149 226 19781 1.13 20007 150 224 19822 1.12 20046 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106763 356344 23.05 463107 2 103489 506273 16.97 609762 3 84847 460794 15.55 545641 4 69145 553732 11.10 622877 5 28190 665071 4.07 693261 6 23810 761642 3.03 785452 7 23962 925936 2.52 949898 8 22425 900388 2.43 922813 9 20399 823256 2.42 843655 10 19171 799962 2.34 819133 11 19398 781828 2.42 801226 12 17714 771715 2.24 789429 13 17105 795295 2.11 812400 14 16365 774586 2.07 790951 15 16845 750582 2.19 767427 16 15516 707031 2.15 722547 17 15322 689409 2.17 704731 18 13700 696470 1.93 710170 19 14416 696090 2.03 710506 20 12921 687623 1.84 700544 21 13358 639934 2.04 653292 22 11223 633389 1.74 644612 23 12768 624529 2.00 637297 24 10623 619781 1.69 630404 25 11689 618191 1.86 629880 26 10188 606412 1.65 616600 27 10640 590731 1.77 601371 28 9827 591608 1.63 601435 29 10469 582447 1.77 592916 30 9047 573421 1.55 582468 31 9927 576840 1.69 586767 32 8961 553719 1.59 562680 33 8935 547381 1.61 556316 34 8934 539669 1.63 548603 35 8783 525362 1.64 534145 36 8138 518134 1.55 526272 37 8652 512346 1.66 520998 38 7693 500703 1.51 508396 39 8540 490492 1.71 499032 40 7540 478988 1.55 486528 41 7953 492059 1.59 500012 42 6942 467302 1.46 474244 43 8305 463342 1.76 471647 44 6745 454018 1.46 460763 45 7712 451359 1.68 459071 46 6723 441172 1.50 447895 47 7505 434183 1.70 441688 48 6299 422948 1.47 429247 49 7028 418854 1.65 425882 50 6526 412877 1.56 419403 51 6761 405204 1.64 411965 52 6246 397439 1.55 403685 53 6376 391075 1.60 397451 54 6273 379283 1.63 385556 55 6109 371672 1.62 377781 56 6107 366347 1.64 372454 57 6009 360133 1.64 366142 58 5996 364802 1.62 370798 59 6041 360390 1.65 366431 60 5256 344844 1.50 350100 61 5824 339358 1.69 345182 62 5391 339822 1.56 345213 63 5526 322554 1.68 328080 64 5097 316682 1.58 321779 65 5544 313201 1.74 318745 66 4597 309593 1.46 314190 67 5701 312571 1.79 318272 68 4714 298300 1.56 303014 69 5157 299292 1.69 304449 70 4749 291036 1.61 295785 71 4757 285128 1.64 289885 72 4596 282068 1.60 286664 73 4765 279616 1.68 284381 74 4442 280760 1.56 285202 75 4471 268411 1.64 272882 76 4429 261171 1.67 265600 77 4104 261430 1.55 265534 78 4236 263370 1.58 267606 79 4132 257765 1.58 261897 80 4129 248778 1.63 252907 81 3940 245986 1.58 249926 82 3932 244758 1.58 248690 83 4059 233608 1.71 237667 84 3642 229098 1.56 232740 85 3867 224944 1.69 228811 86 3472 223284 1.53 226756 87 3821 218525 1.72 222346 88 3186 217857 1.44 221043 89 3723 214952 1.70 218675 90 3073 206069 1.47 209142 91 3574 204424 1.72 207998 92 3193 201259 1.56 204452 93 3194 196402 1.60 199596 94 3210 195075 1.62 198285 95 3170 192169 1.62 195339 96 3013 194038 1.53 197051 97 3160 190441 1.63 193601 98 3240 180613 1.76 183853 99 2679 176682 1.49 179361 100 3055 173608 1.73 176663 101 2822 173335 1.60 176157 102 2699 170469 1.56 173168 103 2680 171117 1.54 173797 104 2683 165647 1.59 168330 105 2711 166175 1.61 168886 106 2559 159031 1.58 161590 107 2550 155830 1.61 158380 108 2358 156427 1.49 158785 109 2661 150024 1.74 152685 110 2213 148355 1.47 150568 111 2577 149305 1.70 151882 112 2162 144276 1.48 146438 113 2303 140645 1.61 142948 114 2115 139462 1.49 141577 115 2248 137290 1.61 139538 116 2192 133735 1.61 135927 117 2095 132085 1.56 134180 118 2091 129567 1.59 131658 119 2038 126884 1.58 128922 120 2049 123921 1.63 125970 121 1950 121592 1.58 123542 122 2134 120580 1.74 122714 123 1813 119055 1.50 120868 124 2002 116708 1.69 118710 125 1827 114729 1.57 116556 126 1736 111725 1.53 113461 127 1845 110679 1.64 112524 128 1691 107882 1.54 109573 129 1759 107011 1.62 108770 130 1620 105393 1.51 107013 131 1753 104989 1.64 106742 132 1504 101103 1.47 102607 133 1714 100242 1.68 101956 134 1436 99267 1.43 100703 135 1632 96836 1.66 98468 136 1502 94883 1.56 96385 137 1529 93887 1.60 95416 138 1498 93258 1.58 94756 139 1551 91312 1.67 92863 140 1397 88289 1.56 89686 141 1361 87364 1.53 88725 142 1459 86657 1.66 88116 143 1338 85215 1.55 86553 144 1428 84027 1.67 85455 145 1451 82232 1.73 83683 146 1339 80411 1.64 81750 147 1406 79383 1.74 80789 148 1325 79147 1.65 80472 149 1431 77250 1.82 78681 150 1262 76086 1.63 77348