CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 174637 642363 21.38 817000 2 182730 995177 15.51 1177907 3 153601 1278099 10.73 1431700 4 173689 947302 15.49 1120991 5 140394 1189885 10.55 1330279 6 109333 836305 11.56 945638 7 106644 749562 12.46 856206 8 121834 806750 13.12 928584 9 127659 808059 13.64 935718 10 136993 773958 15.04 910951 11 153892 817795 15.84 971687 12 181056 819942 18.09 1000998 13 180480 816374 18.10 996854 14 166763 821908 16.87 988671 15 167856 809010 17.18 976866 16 169244 816049 17.18 985293 17 175899 827213 17.54 1003112 18 169169 832562 16.89 1001731 19 165153 790506 17.28 955659 20 170529 805899 17.46 976428 21 173166 822498 17.39 995664 22 172769 820409 17.40 993178 23 173961 817398 17.55 991359 24 174541 829054 17.39 1003595 25 177164 828704 17.61 1005868 26 178133 816766 17.90 994899 27 177579 828002 17.66 1005581 28 175873 812450 17.80 988323 29 176320 811166 17.86 987486 30 176107 820210 17.68 996317 31 175241 821553 17.58 996794 32 175821 814880 17.75 990701 33 175312 816565 17.67 991877 34 177020 811507 17.91 988527 35 177606 813500 17.92 991106 36 176441 846133 17.25 1022574 37 175235 807344 17.83 982579 38 178532 822068 17.84 1000600 39 176813 825703 17.64 1002516 40 175042 798718 17.98 973760 41 178942 806404 18.16 985346 42 176342 811252 17.86 987594 43 177038 799059 18.14 976097 44 179386 808243 18.16 987629 45 176297 803835 17.99 980132 46 175213 796355 18.03 971568 47 175750 794715 18.11 970465 48 175871 804208 17.94 980079 49 175185 796540 18.03 971725 50 175005 802720 17.90 977725 51 173349 796442 17.87 969791 52 169418 790684 17.65 960102 53 170939 775289 18.07 946228 54 167643 777684 17.73 945327 55 168312 777513 17.80 945825 56 169352 771822 17.99 941174 57 170353 782435 17.88 952788 58 165711 769556 17.72 935267 59 166509 769012 17.80 935521 60 164723 768965 17.64 933688 61 163018 749891 17.86 912909 62 160925 743128 17.80 904053 63 160309 743566 17.74 903875 64 158304 738923 17.64 897227 65 159652 735618 17.83 895270 66 157418 740848 17.52 898266 67 159449 726898 17.99 886347 68 154918 728639 17.53 883557 69 154034 728027 17.46 882061 70 152185 713263 17.58 865448 71 151485 697618 17.84 849103 72 148292 696706 17.55 844998 73 147200 685819 17.67 833019 74 146434 678387 17.75 824821 75 143591 674372 17.55 817963 76 141361 665623 17.52 806984 77 141793 659404 17.70 801197 78 138558 654363 17.47 792921 79 137321 647034 17.51 784355 80 136941 644786 17.52 781727 81 136109 641216 17.51 777325 82 134234 630219 17.56 764453 83 133499 628823 17.51 762322 84 130558 629353 17.18 759911 85 128124 610355 17.35 738479 86 126885 607124 17.29 734009 87 125096 596965 17.32 722061 88 124955 594709 17.36 719664 89 122365 587893 17.23 710258 90 120880 584807 17.13 705687 91 120136 571593 17.37 691729 92 117467 562133 17.28 679600 93 116637 561392 17.20 678029 94 112541 536653 17.34 649194 95 109882 533970 17.07 643852 96 108602 532309 16.94 640911 97 105974 519535 16.94 625509 98 105321 514122 17.00 619443 99 103703 505937 17.01 609640 100 102086 496541 17.05 598627 101 101471 494912 17.01 596383 102 99824 493833 16.82 593657 103 97572 476313 17.00 573885 104 96534 470831 17.01 567365 105 95352 465778 16.99 561130 106 93486 458793 16.93 552279 107 90022 450517 16.65 540539 108 89445 453750 16.47 543195 109 89240 441419 16.82 530659 110 87330 434299 16.74 521629 111 86404 431179 16.69 517583 112 84288 421968 16.65 506256 113 83433 417209 16.67 500642 114 82556 410054 16.76 492610 115 81806 403831 16.85 485637 116 79209 399291 16.55 478500 117 76972 397930 16.21 474902 118 75074 388011 16.21 463085 119 74863 387382 16.20 462245 120 73520 374166 16.42 447686 121 72105 367661 16.40 439766 122 71268 361951 16.45 433219 123 69394 356073 16.31 425467 124 69013 347927 16.55 416940 125 69428 346038 16.71 415466 126 66802 341295 16.37 408097 127 64331 333300 16.18 397631 128 63893 327258 16.33 391151 129 61846 318680 16.25 380526 130 60761 313722 16.23 374483 131 59994 309804 16.22 369798 132 58743 306057 16.10 364800 133 58244 297792 16.36 356036 134 57211 293478 16.31 350689 135 55982 290016 16.18 345998 136 56726 286392 16.53 343118 137 55339 282634 16.37 337973 138 53427 278456 16.10 331883 139 53337 273422 16.32 326759 140 52667 271763 16.23 324430 141 49749 263628 15.88 313377 142 48327 256589 15.85 304916 143 47662 254095 15.79 301757 144 46468 251009 15.62 297477 145 45923 246659 15.70 292582 146 45298 246053 15.55 291351 147 45429 245317 15.62 290746 148 43836 239702 15.46 283538 149 42511 234070 15.37 276581 150 41091 228915 15.22 270006 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 223870 2747427 7.53 2971297 2 111586 1055012 9.57 1166598 3 83240 1505165 5.24 1588405 4 95661 1304061 6.83 1399722 5 38138 1651556 2.26 1689694 6 27152 2077485 1.29 2104637 7 21427 1374412 1.54 1395839 8 21951 1312562 1.64 1334513 9 20025 1342659 1.47 1362684 10 23942 1310754 1.79 1334696 11 36515 1323634 2.68 1360149 12 20978 1381170 1.50 1402148 13 22033 1412589 1.54 1434622 14 17903 1390648 1.27 1408551 15 18403 1356262 1.34 1374665 16 19350 1358453 1.40 1377803 17 17109 1380946 1.22 1398055 18 17908 1422396 1.24 1440304 19 16290 1341920 1.20 1358210 20 16475 1352264 1.20 1368739 21 16481 1354912 1.20 1371393 22 15885 1378282 1.14 1394167 23 15993 1386480 1.14 1402473 24 15862 1375592 1.14 1391454 25 15983 1392940 1.13 1408923 26 15420 1374951 1.11 1390371 27 15774 1376306 1.13 1392080 28 15131 1390308 1.08 1405439 29 15562 1380264 1.11 1395826 30 15109 1379290 1.08 1394399 31 15220 1373447 1.10 1388667 32 15085 1359004 1.10 1374089 33 15402 1383479 1.10 1398881 34 15174 1386669 1.08 1401843 35 15351 1388230 1.09 1403581 36 14929 1361131 1.08 1376060 37 15002 1400667 1.06 1415669 38 15167 1369288 1.10 1384455 39 15692 1404495 1.10 1420187 40 14906 1367755 1.08 1382661 41 15060 1385739 1.08 1400799 42 15229 1375289 1.10 1390518 43 15592 1385947 1.11 1401539 44 15074 1357290 1.10 1372364 45 15498 1363248 1.12 1378746 46 15238 1351690 1.11 1366928 47 14912 1335886 1.10 1350798 48 15532 1338800 1.15 1354332 49 15506 1362322 1.13 1377828 50 15423 1337904 1.14 1353327 51 15949 1341353 1.18 1357302 52 15698 1339241 1.16 1354939 53 15306 1335991 1.13 1351297 54 15894 1310500 1.20 1326394 55 15748 1330602 1.17 1346350 56 15808 1309894 1.19 1325702 57 15974 1309499 1.21 1325473 58 16013 1299268 1.22 1315281 59 15833 1287368 1.21 1303201 60 15944 1296082 1.22 1312026 61 16295 1301730 1.24 1318025 62 16084 1280307 1.24 1296391 63 16125 1258228 1.27 1274353 64 16054 1260312 1.26 1276366 65 16013 1252024 1.26 1268037 66 16157 1243343 1.28 1259500 67 16459 1251550 1.30 1268009 68 16051 1223327 1.30 1239378 69 16281 1222262 1.31 1238543 70 16217 1222649 1.31 1238866 71 16070 1195724 1.33 1211794 72 16083 1187285 1.34 1203368 73 16125 1181654 1.35 1197779 74 15903 1162260 1.35 1178163 75 15980 1153531 1.37 1169511 76 15785 1150518 1.35 1166303 77 15912 1128555 1.39 1144467 78 15892 1112971 1.41 1128863 79 15841 1110168 1.41 1126009 80 15235 1086310 1.38 1101545 81 15974 1104376 1.43 1120350 82 15560 1069831 1.43 1085391 83 15655 1056132 1.46 1071787 84 15409 1042936 1.46 1058345 85 15663 1043613 1.48 1059276 86 15282 1020587 1.48 1035869 87 15442 1017320 1.50 1032762 88 15081 1004009 1.48 1019090 89 15247 990492 1.52 1005739 90 14822 988513 1.48 1003335 91 14868 976064 1.50 990932 92 14636 950948 1.52 965584 93 14881 948199 1.55 963080 94 14602 947119 1.52 961721 95 14387 902776 1.57 917163 96 14180 893090 1.56 907270 97 14060 893490 1.55 907550 98 13722 864614 1.56 878336 99 13776 858114 1.58 871890 100 13601 849239 1.58 862840 101 13606 840158 1.59 853764 102 13962 854204 1.61 868166 103 12999 812957 1.57 825956 104 13114 791900 1.63 805014 105 12734 780448 1.61 793182 106 12798 766536 1.64 779334 107 12537 755339 1.63 767876 108 12547 747394 1.65 759941 109 12408 738452 1.65 750860 110 12190 723121 1.66 735311 111 12081 716834 1.66 728915 112 11874 707673 1.65 719547 113 11718 691857 1.67 703575 114 11646 685846 1.67 697492 115 11392 667688 1.68 679080 116 11166 655846 1.67 667012 117 11211 652677 1.69 663888 118 10939 638698 1.68 649637 119 10840 629078 1.69 639918 120 10749 620514 1.70 631263 121 10650 610433 1.71 621083 122 10371 596274 1.71 606645 123 10334 596525 1.70 606859 124 10142 577738 1.73 587880 125 10117 573289 1.73 583406 126 9935 561087 1.74 571022 127 9965 556806 1.76 566771 128 9576 544511 1.73 554087 129 9536 540990 1.73 550526 130 9524 523780 1.79 533304 131 9232 515046 1.76 524278 132 9238 511476 1.77 520714 133 8962 505972 1.74 514934 134 8895 492681 1.77 501576 135 8677 484226 1.76 492903 136 8640 475266 1.79 483906 137 8604 473830 1.78 482434 138 8349 465711 1.76 474060 139 8135 454859 1.76 462994 140 7943 442069 1.77 450012 141 7678 439840 1.72 447518 142 7549 432704 1.71 440253 143 7500 417535 1.76 425035 144 7212 417791 1.70 425003 145 7156 410231 1.71 417387 146 7073 406372 1.71 413445 147 6936 400549 1.70 407485 148 7058 389936 1.78 396994 149 7598 387237 1.92 394835 150 7457 382024 1.91 389481 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 577949 2370001 19.61 2947950 2 462056 3115300 12.92 3577356 3 350014 2918400 10.71 3268414 4 359040 2778697 11.44 3137737 5 187424 3444888 5.16 3632312 6 143631 3884348 3.57 4027979 7 131833 4506139 2.84 4637972 8 132990 4448159 2.90 4581149 9 109109 4214872 2.52 4323981 10 99736 4137347 2.35 4237083 11 107620 4064469 2.58 4172089 12 96432 4049336 2.33 4145768 13 96013 4122500 2.28 4218513 14 87536 4067564 2.11 4155100 15 95181 4003344 2.32 4098525 16 97507 3973398 2.40 4070905 17 89212 3937749 2.22 4026961 18 82498 4002809 2.02 4085307 19 89302 4035523 2.16 4124825 20 83671 4079672 2.01 4163343 21 86057 3974446 2.12 4060503 22 78525 4009925 1.92 4088450 23 85053 4040648 2.06 4125701 24 76665 4013904 1.87 4090569 25 82929 4079220 1.99 4162149 26 76869 4078420 1.85 4155289 27 80165 4070994 1.93 4151159 28 75767 4138088 1.80 4213855 29 79626 4162656 1.88 4242282 30 72791 4128828 1.73 4201619 31 77943 4156462 1.84 4234405 32 74057 4126199 1.76 4200256 33 75109 4141620 1.78 4216729 34 71517 4164384 1.69 4235901 35 74543 4134870 1.77 4209413 36 68374 4131402 1.63 4199776 37 74113 4164673 1.75 4238786 38 69572 4154805 1.65 4224377 39 73096 4142170 1.73 4215266 40 68421 4127687 1.63 4196108 41 72495 4228165 1.69 4300660 42 66060 4143774 1.57 4209834 43 72239 4153951 1.71 4226190 44 66853 4168723 1.58 4235576 45 70813 4178639 1.67 4249452 46 67030 4176864 1.58 4243894 47 70956 4177199 1.67 4248155 48 66518 4127840 1.59 4194358 49 69805 4161344 1.65 4231149 50 67339 4158066 1.59 4225405 51 69887 4133624 1.66 4203511 52 66875 4098356 1.61 4165231 53 69416 4092407 1.67 4161823 54 65812 4051204 1.60 4117016 55 67345 4037224 1.64 4104569 56 66678 4035690 1.63 4102368 57 67693 3998500 1.66 4066193 58 66723 4020793 1.63 4087516 59 70069 4020148 1.71 4090217 60 64622 3938321 1.61 4002943 61 66783 3936179 1.67 4002962 62 64751 3953955 1.61 4018706 63 66148 3850662 1.69 3916810 64 64513 3830013 1.66 3894526 65 66887 3799549 1.73 3866436 66 62329 3777893 1.62 3840222 67 67108 3796166 1.74 3863274 68 63220 3730709 1.67 3793929 69 64945 3734121 1.71 3799066 70 63739 3705148 1.69 3768887 71 65481 3653375 1.76 3718856 72 62681 3614918 1.70 3677599 73 64055 3615715 1.74 3679770 74 62854 3617689 1.71 3680543 75 62673 3534345 1.74 3597018 76 62472 3500863 1.75 3563335 77 62278 3481122 1.76 3543400 78 61588 3485795 1.74 3547383 79 62936 3443869 1.79 3506805 80 60343 3385261 1.75 3445604 81 61056 3349986 1.79 3411042 82 59418 3333957 1.75 3393375 83 60925 3250592 1.84 3311517 84 57851 3203636 1.77 3261487 85 58933 3169096 1.83 3228029 86 57642 3148997 1.80 3206639 87 58557 3099986 1.85 3158543 88 56835 3088677 1.81 3145512 89 58862 3054894 1.89 3113756 90 55001 2983244 1.81 3038245 91 57537 2971065 1.90 3028602 92 55977 2934934 1.87 2990911 93 55920 2890140 1.90 2946060 94 54772 2867209 1.87 2921981 95 55180 2838203 1.91 2893383 96 53337 2825776 1.85 2879113 97 54136 2783907 1.91 2838043 98 53138 2701133 1.93 2754271 99 52223 2657802 1.93 2710025 100 52254 2622394 1.95 2674648 101 51230 2594468 1.94 2645698 102 50157 2575697 1.91 2625854 103 50825 2563575 1.94 2614400 104 49383 2514690 1.93 2564073 105 49755 2496725 1.95 2546480 106 47966 2430080 1.94 2478046 107 47799 2383958 1.97 2431757 108 46529 2369417 1.93 2415946 109 47402 2314198 2.01 2361600 110 46005 2287397 1.97 2333402 111 46694 2281316 2.01 2328010 112 45443 2230885 2.00 2276328 113 45210 2184746 2.03 2229956 114 44446 2160050 2.02 2204496 115 44560 2123861 2.05 2168421 116 43041 2087906 2.02 2130947 117 42410 2053232 2.02 2095642 118 41732 2018168 2.03 2059900 119 42191 1988963 2.08 2031154 120 41437 1952290 2.08 1993727 121 40591 1924292 2.07 1964883 122 40364 1893565 2.09 1933929 123 39551 1855748 2.09 1895299 124 38645 1825865 2.07 1864510 125 38852 1800760 2.11 1839612 126 37430 1770279 2.07 1807709 127 37162 1748235 2.08 1785397 128 36453 1713760 2.08 1750213 129 35946 1686128 2.09 1722074 130 35070 1657919 2.07 1692989 131 35769 1639439 2.14 1675208 132 33928 1601022 2.08 1634950 133 34624 1576413 2.15 1611037 134 33377 1551281 2.11 1584658 135 32614 1520852 2.10 1553466 136 32274 1501793 2.10 1534067 137 32126 1481656 2.12 1513782 138 30965 1462152 2.07 1493117 139 31237 1434820 2.13 1466057 140 30046 1399728 2.10 1429774 141 29135 1374531 2.08 1403666 142 29561 1356082 2.13 1385643 143 28501 1332652 2.09 1361153 144 28298 1311495 2.11 1339793 145 27885 1295819 2.11 1323704 146 27348 1276915 2.10 1304263 147 26997 1262493 2.09 1289490 148 27709 1246657 2.17 1274366 149 28326 1229572 2.25 1257898 150 27214 1204182 2.21 1231396 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43637 190438 18.64 234075 2 43397 268260 13.92 311657 3 35415 349422 9.20 384837 4 43447 248926 14.86 292373 5 31996 293951 9.82 325947 6 25494 212196 10.73 237690 7 24098 189973 11.26 214071 8 27103 198289 12.02 225392 9 27460 194022 12.40 221482 10 29407 183968 13.78 213375 11 33518 185634 15.29 219152 12 43812 187069 18.98 230881 13 42059 182391 18.74 224450 14 32014 179153 15.16 211167 15 31352 173442 15.31 204794 16 31762 171680 15.61 203442 17 32975 174602 15.89 207577 18 30313 169455 15.17 199768 19 29181 161164 15.33 190345 20 29319 160072 15.48 189391 21 29202 159684 15.46 188886 22 28705 156029 15.54 184734 23 28286 151426 15.74 179712 24 27971 151771 15.56 179742 25 28602 149249 16.08 177851 26 27877 144921 16.13 172798 27 26980 143870 15.79 170850 28 26670 138871 16.11 165541 29 25709 135407 15.96 161116 30 25350 133819 15.93 159169 31 24681 132245 15.73 156926 32 24314 128247 15.94 152561 33 23515 127179 15.60 150694 34 23974 124119 16.19 148093 35 23218 122732 15.91 145950 36 22713 126012 15.27 148725 37 22362 118485 15.88 140847 38 22073 115615 16.03 137688 39 21394 114111 15.79 135505 40 21487 109674 16.38 131161 41 21288 108431 16.41 129719 42 20804 108134 16.13 128938 43 20472 104950 16.32 125422 44 20391 103395 16.47 123786 45 19256 101385 15.96 120641 46 19193 99383 16.19 118576 47 18954 97531 16.27 116485 48 18597 96503 16.16 115100 49 18437 94357 16.35 112794 50 17921 92797 16.19 110718 51 17451 90802 16.12 108253 52 17089 88775 16.14 105864 53 16549 85606 16.20 102155 54 16220 85029 16.02 101249 55 16016 83083 16.16 99099 56 15948 81740 16.33 97688 57 15740 82752 15.98 98492 58 15162 80170 15.90 95332 59 15108 78137 16.20 93245 60 14687 76830 16.05 91517 61 14455 74346 16.28 88801 62 14211 72539 16.38 86750 63 13791 71191 16.23 84982 64 13800 69988 16.47 83788 65 13396 68739 16.31 82135 66 12988 68406 15.96 81394 67 13442 66956 16.72 80398 68 12533 65824 15.99 78357 69 12339 65437 15.86 77776 70 12056 62548 16.16 74604 71 12213 61009 16.68 73222 72 11627 60510 16.12 72137 73 11426 58915 16.24 70341 74 11517 58035 16.56 69552 75 11170 56846 16.42 68016 76 10855 55798 16.29 66653 77 10604 54799 16.21 65403 78 10299 53639 16.11 63938 79 10299 52591 16.38 62890 80 10106 52159 16.23 62265 81 9879 51534 16.09 61413 82 9814 50463 16.28 60277 83 9723 49881 16.31 59604 84 9359 48875 16.07 58234 85 9190 47735 16.14 56925 86 9105 46582 16.35 55687 87 8806 45654 16.17 54460 88 8936 45160 16.52 54096 89 8594 44872 16.07 53466 90 8436 44296 16.00 52732 91 8500 42502 16.67 51002 92 8090 41330 16.37 49420 93 8174 42272 16.20 50446 94 7751 39702 16.33 47453 95 7513 39036 16.14 46549 96 7377 38641 16.03 46018 97 7107 37202 16.04 44309 98 7058 37050 16.00 44108 99 6766 35991 15.82 42757 100 6634 35467 15.76 42101 101 6819 35277 16.20 42096 102 6570 35304 15.69 41874 103 6346 33600 15.89 39946 104 6346 32877 16.18 39223 105 6334 32168 16.45 38502 106 6016 31983 15.83 37999 107 5816 30946 15.82 36762 108 5863 31669 15.62 37532 109 5793 30482 15.97 36275 110 5680 29800 16.01 35480 111 5497 29415 15.75 34912 112 5463 28486 16.09 33949 113 5195 28246 15.53 33441 114 5385 27565 16.34 32950 115 5129 26987 15.97 32116 116 5022 26889 15.74 31911 117 4987 26737 15.72 31724 118 4693 25767 15.41 30460 119 4631 25605 15.32 30236 120 4642 24731 15.80 29373 121 4545 24180 15.82 28725 122 4567 23900 16.04 28467 123 4300 23188 15.64 27488 124 4406 23238 15.94 27644 125 4468 22585 16.52 27053 126 4397 22487 16.36 26884 127 3922 21689 15.31 25611 128 3981 21208 15.80 25189 129 3829 20670 15.63 24499 130 3780 20517 15.56 24297 131 3669 20149 15.40 23818 132 3674 19489 15.86 23163 133 3607 19070 15.91 22677 134 3491 19051 15.49 22542 135 3341 18932 15.00 22273 136 3439 18169 15.92 21608 137 3326 17710 15.81 21036 138 3249 17659 15.54 20908 139 3327 17875 15.69 21202 140 3171 17395 15.42 20566 141 3135 17037 15.54 20172 142 3026 16314 15.65 19340 143 2862 16301 14.94 19163 144 2854 15790 15.31 18644 145 2694 15362 14.92 18056 146 2806 15607 15.24 18413 147 2841 15878 15.18 18719 148 2690 14904 15.29 17594 149 2541 14805 14.65 17346 150 2553 14449 15.02 17002 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 58877 734556 7.42 793433 2 31012 322360 8.78 353372 3 25389 373624 6.36 399013 4 26588 337028 7.31 363616 5 14953 402782 3.58 417735 6 7724 487867 1.56 495591 7 6525 336157 1.90 342682 8 6652 318036 2.05 324688 9 5834 319138 1.80 324972 10 8166 300098 2.65 308264 11 14081 294651 4.56 308732 12 6136 302189 1.99 308325 13 6738 302300 2.18 309038 14 4383 299655 1.44 304038 15 4802 282268 1.67 287070 16 5678 274505 2.03 280183 17 4077 276874 1.45 280951 18 4366 290867 1.48 295233 19 3770 259620 1.43 263390 20 3801 261599 1.43 265400 21 3621 252726 1.41 256347 22 3200 252112 1.25 255312 23 3164 252048 1.24 255212 24 3041 242066 1.24 245107 25 3139 242518 1.28 245657 26 2880 235939 1.21 238819 27 2869 233928 1.21 236797 28 2810 230574 1.20 233384 29 2542 228002 1.10 230544 30 2461 222033 1.10 224494 31 2389 213839 1.10 216228 32 2334 206829 1.12 209163 33 2314 208718 1.10 211032 34 2223 205068 1.07 207291 35 2232 202152 1.09 204384 36 2152 196423 1.08 198575 37 2163 199719 1.07 201882 38 2019 188336 1.06 190355 39 2072 191715 1.07 193787 40 1928 181582 1.05 183510 41 2031 183665 1.09 185696 42 1901 177712 1.06 179613 43 1799 175078 1.02 176877 44 1689 167286 1.00 168975 45 1795 166916 1.06 168711 46 1720 161996 1.05 163716 47 1670 158081 1.05 159751 48 1700 156200 1.08 157900 49 1638 156419 1.04 158057 50 1593 151641 1.04 153234 51 1597 150625 1.05 152222 52 1617 145495 1.10 147112 53 1502 143490 1.04 144992 54 1557 138180 1.11 139737 55 1502 138313 1.07 139815 56 1447 134687 1.06 136134 57 1414 133470 1.05 134884 58 1361 128755 1.05 130116 59 1386 126841 1.08 128227 60 1411 126247 1.11 127658 61 1320 124661 1.05 125981 62 1301 122320 1.05 123621 63 1246 118279 1.04 119525 64 1174 115236 1.01 116410 65 1260 114869 1.09 116129 66 1216 112014 1.07 113230 67 1285 112321 1.13 113606 68 1191 108450 1.09 109641 69 1197 106394 1.11 107591 70 1159 106193 1.08 107352 71 1165 102985 1.12 104150 72 1145 101482 1.12 102627 73 1150 99412 1.14 100562 74 1097 97376 1.11 98473 75 1029 94872 1.07 95901 76 1004 93814 1.06 94818 77 972 91984 1.05 92956 78 1012 89210 1.12 90222 79 950 88383 1.06 89333 80 965 85870 1.11 86835 81 930 85856 1.07 86786 82 936 82815 1.12 83751 83 885 82564 1.06 83449 84 866 79674 1.08 80540 85 897 78599 1.13 79496 86 833 77110 1.07 77943 87 822 75835 1.07 76657 88 856 74883 1.13 75739 89 830 73173 1.12 74003 90 824 73308 1.11 74132 91 781 71610 1.08 72391 92 728 70425 1.02 71153 93 759 69895 1.07 70654 94 803 69500 1.14 70303 95 741 64797 1.13 65538 96 712 63460 1.11 64172 97 702 63569 1.09 64271 98 698 61502 1.12 62200 99 660 60462 1.08 61122 100 632 59281 1.05 59913 101 734 59208 1.22 59942 102 636 60584 1.04 61220 103 600 56707 1.05 57307 104 644 55606 1.14 56250 105 631 53488 1.17 54119 106 604 52392 1.14 52996 107 555 51579 1.06 52134 108 563 50844 1.10 51407 109 535 50069 1.06 50604 110 573 48437 1.17 49010 111 523 48148 1.07 48671 112 534 47369 1.11 47903 113 506 46150 1.08 46656 114 492 45947 1.06 46439 115 539 44803 1.19 45342 116 484 43712 1.10 44196 117 493 42949 1.13 43442 118 489 42644 1.13 43133 119 419 41636 1.00 42055 120 443 40570 1.08 41013 121 464 39845 1.15 40309 122 398 38979 1.01 39377 123 430 38929 1.09 39359 124 422 37380 1.12 37802 125 377 38364 0.97 38741 126 392 36741 1.06 37133 127 402 36095 1.10 36497 128 444 35205 1.25 35649 129 405 35271 1.14 35676 130 375 33501 1.11 33876 131 361 33139 1.08 33500 132 385 32882 1.16 33267 133 332 32476 1.01 32808 134 309 31432 0.97 31741 135 334 31188 1.06 31522 136 321 30575 1.04 30896 137 329 30305 1.07 30634 138 337 29337 1.14 29674 139 361 29067 1.23 29428 140 320 27939 1.13 28259 141 307 27985 1.09 28292 142 287 27498 1.03 27785 143 307 26630 1.14 26937 144 306 26609 1.14 26915 145 326 26118 1.23 26444 146 307 25991 1.17 26298 147 302 25396 1.18 25698 148 276 24625 1.11 24901 149 290 24136 1.19 24426 150 284 24025 1.17 24309 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 145182 722056 16.74 867238 2 124180 904970 12.07 1029150 3 93997 831863 10.15 925860 4 97807 781351 11.13 879158 5 57819 894457 6.07 952276 6 43126 979509 4.22 1022635 7 35399 1125548 3.05 1160947 8 40329 1092558 3.56 1132887 9 26566 1019150 2.54 1045716 10 25149 989481 2.48 1014630 11 27073 949079 2.77 976152 12 25149 932166 2.63 957315 13 22278 943020 2.31 965298 14 20637 919773 2.19 940410 15 23301 898396 2.53 921697 16 26834 867558 3.00 894392 17 19507 851740 2.24 871247 18 18545 852762 2.13 871307 19 19350 850609 2.22 869959 20 17765 842094 2.07 859859 21 17676 801899 2.16 819575 22 15397 799290 1.89 814687 23 16009 793941 1.98 809950 24 14437 782582 1.81 797019 25 14940 778677 1.88 793617 26 13682 764606 1.76 778288 27 13507 750387 1.77 763894 28 12844 751425 1.68 764269 29 12998 736638 1.73 749636 30 11585 725384 1.57 736969 31 11767 718436 1.61 730203 32 11657 700624 1.64 712281 33 11028 692153 1.57 703181 34 10676 680304 1.55 690980 35 10550 664032 1.56 674582 36 9820 654912 1.48 664732 37 10344 650620 1.56 660964 38 9541 636812 1.48 646353 39 10031 627224 1.57 637255 40 8967 611677 1.44 620644 41 9552 613626 1.53 623178 42 8543 593141 1.42 601684 43 9364 585693 1.57 595057 44 8370 577669 1.43 586039 45 9012 572559 1.55 581571 46 8145 561690 1.43 569835 47 8691 551017 1.55 559708 48 7811 537505 1.43 545316 49 8295 531282 1.54 539577 50 7818 523432 1.47 531250 51 8046 513984 1.54 522030 52 7599 502471 1.49 510070 53 7747 493909 1.54 501656 54 7304 483116 1.49 490420 55 7361 473174 1.53 480535 56 7218 468087 1.52 475305 57 7152 456358 1.54 463510 58 6927 454565 1.50 461492 59 7341 448317 1.61 455658 60 6373 434740 1.44 441113 61 6726 428452 1.55 435178 62 6462 427066 1.49 433528 63 6524 409750 1.57 416274 64 6069 402699 1.48 408768 65 6595 395206 1.64 401801 66 5635 389243 1.43 394878 67 6284 389588 1.59 395872 68 5767 376655 1.51 382422 69 6018 375660 1.58 381678 70 5797 366059 1.56 371856 71 5774 359647 1.58 365421 72 5515 353256 1.54 358771 73 5630 350169 1.58 355799 74 5364 347245 1.52 352609 75 5313 335138 1.56 340451 76 5195 328894 1.55 334089 77 5065 326985 1.53 332050 78 4962 324929 1.50 329891 79 5023 319582 1.55 324605 80 4867 310123 1.55 314990 81 4883 305657 1.57 310540 82 4713 302731 1.53 307444 83 4742 291591 1.60 296333 84 4376 286337 1.51 290713 85 4344 279955 1.53 284299 86 4288 277238 1.52 281526 87 4440 272369 1.60 276809 88 4034 269281 1.48 273315 89 4411 266056 1.63 270467 90 3769 257391 1.44 261160 91 4128 254585 1.60 258713 92 4015 250416 1.58 254431 93 3987 245737 1.60 249724 94 3841 243520 1.55 247361 95 3775 239600 1.55 243375 96 3566 239004 1.47 242570 97 3649 233797 1.54 237446 98 3728 225111 1.63 228839 99 3436 220575 1.53 224011 100 3488 216391 1.59 219879 101 3289 213171 1.52 216460 102 3223 210958 1.50 214181 103 3421 209336 1.61 212757 104 3129 203887 1.51 207016 105 3168 202920 1.54 206088 106 2944 195492 1.48 198436 107 3028 191302 1.56 194330 108 2822 190082 1.46 192904 109 3071 183907 1.64 186978 110 2743 181379 1.49 184122 111 2943 181810 1.59 184753 112 2671 175969 1.50 178640 113 2696 172993 1.53 175689 114 2643 170662 1.53 173305 115 2653 166417 1.57 169070 116 2572 163438 1.55 166010 117 2548 160248 1.57 162796 118 2436 157150 1.53 159586 119 2472 154566 1.57 157038 120 2393 150691 1.56 153084 121 2355 147945 1.57 150300 122 2445 145260 1.66 147705 123 2150 142609 1.49 144759 124 2244 140112 1.58 142356 125 2287 137900 1.63 140187 126 2099 134570 1.54 136669 127 2098 133269 1.55 135367 128 1973 130376 1.49 132349 129 2022 128086 1.55 130108 130 1853 126490 1.44 128343 131 2043 125273 1.60 127316 132 1759 122240 1.42 123999 133 1963 119054 1.62 121017 134 1744 117632 1.46 119376 135 1766 115001 1.51 116767 136 1774 114394 1.53 116168 137 1791 112238 1.57 114029 138 1627 110564 1.45 112191 139 1687 108386 1.53 110073 140 1628 105219 1.52 106847 141 1552 102892 1.49 104444 142 1575 102095 1.52 103670 143 1472 100271 1.45 101743 144 1473 98963 1.47 100436 145 1502 97459 1.52 98961 146 1417 95879 1.46 97296 147 1483 94283 1.55 95766 148 1499 93153 1.58 94652 149 1520 91267 1.64 92787 150 1393 89104 1.54 90497