CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 165668 427578 27.93 593246 2 220652 731249 23.18 951901 3 208796 802994 20.64 1011790 4 147660 658955 18.31 806615 5 100999 846763 10.66 947762 6 76518 531961 12.58 608479 7 74254 475844 13.50 550098 8 82860 518938 13.77 601798 9 86074 519297 14.22 605371 10 92598 491887 15.84 584485 11 99663 518306 16.13 617969 12 109847 517340 17.51 627187 13 109911 518434 17.49 628345 14 109644 516073 17.52 625717 15 109525 507383 17.75 616908 16 111566 517932 17.72 629498 17 125811 538495 18.94 664306 18 112223 522292 17.69 634515 19 109303 500876 17.91 610179 20 112972 508769 18.17 621741 21 113909 523186 17.88 637095 22 113763 519809 17.96 633572 23 114584 514202 18.22 628786 24 114836 524425 17.96 639261 25 116786 528311 18.10 645097 26 117787 519713 18.48 637500 27 116546 530171 18.02 646717 28 115158 525994 17.96 641152 29 116137 516913 18.35 633050 30 115099 523020 18.04 638119 31 114440 528014 17.81 642454 32 114146 516184 18.11 630330 33 113413 520921 17.88 634334 34 114660 518211 18.12 632871 35 115123 523402 18.03 638525 36 114261 548537 17.24 662798 37 113260 515792 18.00 629052 38 114513 526032 17.88 640545 39 114657 524238 17.95 638895 40 112132 508689 18.06 620821 41 114133 514107 18.17 628240 42 113914 517877 18.03 631791 43 113356 507946 18.24 621302 44 114894 514487 18.26 629381 45 112183 509598 18.04 621781 46 111619 505236 18.09 616855 47 111968 501941 18.24 613909 48 112131 505946 18.14 618077 49 111992 500905 18.27 612897 50 111230 506754 18.00 617984 51 109596 501202 17.94 610798 52 107156 495175 17.79 602331 53 106911 484125 18.09 591036 54 105992 490452 17.77 596444 55 106302 486623 17.93 592925 56 106326 484358 18.00 590684 57 106526 494957 17.71 601483 58 103911 477444 17.87 581355 59 104297 478320 17.90 582617 60 102048 479181 17.56 581229 61 100439 466729 17.71 567168 62 99768 457220 17.91 556988 63 99374 457705 17.84 557079 64 99244 459104 17.77 558348 65 98890 455599 17.83 554489 66 97816 455781 17.67 553597 67 99665 449907 18.14 549572 68 95398 447957 17.56 543355 69 95749 449122 17.57 544871 70 93713 438265 17.62 531978 71 93245 427405 17.91 520650 72 91446 427526 17.62 518972 73 91072 420123 17.82 511195 74 91033 416591 17.93 507624 75 89301 416911 17.64 506212 76 88229 409995 17.71 498224 77 87408 406096 17.71 493504 78 85795 403198 17.55 488993 79 84325 397003 17.52 481328 80 85309 396643 17.70 481952 81 84185 397499 17.48 481684 82 83492 390763 17.60 474255 83 82620 386319 17.62 468939 84 82279 390757 17.39 473036 85 79388 378312 17.34 457700 86 79064 374304 17.44 453368 87 78095 367580 17.52 445675 88 78617 368671 17.58 447288 89 76765 366595 17.31 443360 90 76007 363256 17.30 439263 91 75117 354551 17.48 429668 92 73576 352388 17.27 425964 93 73112 353811 17.13 426923 94 71226 336220 17.48 407446 95 69803 336065 17.20 405868 96 68908 334399 17.09 403307 97 67505 324268 17.23 391773 98 66143 322822 17.00 388965 99 65172 319355 16.95 384527 100 65013 313668 17.17 378681 101 65369 315947 17.14 381316 102 63228 316271 16.66 379499 103 61860 301751 17.01 363611 104 62256 298932 17.24 361188 105 61339 297376 17.10 358715 106 59818 293718 16.92 353536 107 58059 290285 16.67 348344 108 58380 295176 16.51 353556 109 57988 287663 16.78 345651 110 56891 280083 16.88 336974 111 56115 279382 16.73 335497 112 55183 271786 16.88 326969 113 55734 271060 17.05 326794 114 54999 266070 17.13 321069 115 54070 261401 17.14 315471 116 52612 260889 16.78 313501 117 50726 259584 16.35 310310 118 49511 253648 16.33 303159 119 49011 254015 16.17 303026 120 49434 246294 16.72 295728 121 48046 241616 16.59 289662 122 48660 239685 16.88 288345 123 47084 234894 16.70 281978 124 47517 231549 17.03 279066 125 49001 233191 17.36 282192 126 45419 228364 16.59 273783 127 44873 222165 16.80 267038 128 43976 219772 16.67 263748 129 42970 214883 16.66 257853 130 42613 212743 16.69 255356 131 42148 211188 16.64 253336 132 41020 208760 16.42 249780 133 40087 202471 16.53 242558 134 39684 200695 16.51 240379 135 39603 198654 16.62 238257 136 40272 197833 16.91 238105 137 40266 196421 17.01 236687 138 38478 193158 16.61 231636 139 39017 190959 16.97 229976 140 38709 189721 16.95 228430 141 36759 184228 16.63 220987 142 35428 179522 16.48 214950 143 34294 179584 16.03 213878 144 34345 176964 16.25 211309 145 34280 174340 16.43 208620 146 33764 175134 16.16 208898 147 34353 176173 16.32 210526 148 33242 171249 16.26 204491 149 32183 167968 16.08 200151 150 30937 163798 15.89 194735 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 234830 1665600 12.36 1900430 2 78302 515387 13.19 593689 3 71951 818430 8.08 890381 4 56404 827102 6.38 883506 5 19307 1241379 1.53 1260686 6 17748 1544764 1.14 1562512 7 13820 908879 1.50 922699 8 13477 864352 1.54 877829 9 13455 874341 1.52 887796 10 14123 849650 1.64 863773 11 15489 869508 1.75 884997 12 12368 901698 1.35 914066 13 12552 917365 1.35 929917 14 11385 892282 1.26 903667 15 12136 877941 1.36 890077 16 12357 891099 1.37 903456 17 10934 898564 1.20 909498 18 11903 951756 1.24 963659 19 10465 878485 1.18 888950 20 10605 895703 1.17 906308 21 10511 885408 1.17 895919 22 10099 895385 1.12 905484 23 10207 895897 1.13 906104 24 10029 899614 1.10 909643 25 10145 910298 1.10 920443 26 10055 908934 1.09 918989 27 10018 911957 1.09 921975 28 10093 910972 1.10 921065 29 9883 904618 1.08 914501 30 10105 909265 1.10 919370 31 9899 902061 1.09 911960 32 9880 891573 1.10 901453 33 10165 904487 1.11 914652 34 10035 915837 1.08 925872 35 9967 915970 1.08 925937 36 9631 888150 1.07 897781 37 10053 913358 1.09 923411 38 9653 893087 1.07 902740 39 10217 916298 1.10 926515 40 9703 887990 1.08 897693 41 9870 911093 1.07 920963 42 9947 901211 1.09 911158 43 10024 904254 1.10 914278 44 9712 877613 1.09 887325 45 9946 876203 1.12 886149 46 9597 870563 1.09 880160 47 9627 857527 1.11 867154 48 10098 864165 1.16 874263 49 10146 878760 1.14 888906 50 9988 863840 1.14 873828 51 10381 862758 1.19 873139 52 9969 855581 1.15 865550 53 10188 851347 1.18 861535 54 10110 829817 1.20 839927 55 10265 848224 1.20 858489 56 10177 838452 1.20 848629 57 10426 831833 1.24 842259 58 10251 821601 1.23 831852 59 10293 811164 1.25 821457 60 10473 820692 1.26 831165 61 10522 822862 1.26 833384 62 10016 811931 1.22 821947 63 10342 788905 1.29 799247 64 10255 787206 1.29 797461 65 10181 784837 1.28 795018 66 10258 780143 1.30 790401 67 10456 787004 1.31 797460 68 10181 769451 1.31 779632 69 10389 763848 1.34 774237 70 10195 767384 1.31 777579 71 10105 748544 1.33 758649 72 10222 744888 1.35 755110 73 10013 735553 1.34 745566 74 9844 728302 1.33 738146 75 9945 721105 1.36 731050 76 9880 722291 1.35 732171 77 10103 704347 1.41 714450 78 9832 694751 1.40 704583 79 10075 694781 1.43 704856 80 9710 680820 1.41 690530 81 9975 692404 1.42 702379 82 9577 667456 1.41 677033 83 9822 664826 1.46 674648 84 9695 653347 1.46 663042 85 9534 658727 1.43 668261 86 9319 642198 1.43 651517 87 9330 634610 1.45 643940 88 9466 625944 1.49 635410 89 9258 621925 1.47 631183 90 9304 624966 1.47 634270 91 9077 613656 1.46 622733 92 9065 601696 1.48 610761 93 9233 605853 1.50 615086 94 9124 620947 1.45 630071 95 8900 571036 1.53 579936 96 8604 560204 1.51 568808 97 8547 566023 1.49 574570 98 8483 547416 1.53 555899 99 8460 544268 1.53 552728 100 8353 542224 1.52 550577 101 8404 540777 1.53 549181 102 8886 567388 1.54 576274 103 8172 522273 1.54 530445 104 8067 512905 1.55 520972 105 7825 504006 1.53 511831 106 8015 494592 1.59 502607 107 7703 486242 1.56 493945 108 7709 480545 1.58 488254 109 7675 476324 1.59 483999 110 7709 467109 1.62 474818 111 7473 467399 1.57 474872 112 7386 465010 1.56 472396 113 7388 453281 1.60 460669 114 7317 450175 1.60 457492 115 7038 438866 1.58 445904 116 7061 429862 1.62 436923 117 7080 427919 1.63 434999 118 6813 422349 1.59 429162 119 6778 417118 1.60 423896 120 6822 410910 1.63 417732 121 6674 407260 1.61 413934 122 6515 398692 1.61 405207 123 6716 400413 1.65 407129 124 6386 387705 1.62 394091 125 6382 386983 1.62 393365 126 6288 377735 1.64 384023 127 6285 376312 1.64 382597 128 6221 368945 1.66 375166 129 6288 366329 1.69 372617 130 6190 356555 1.71 362745 131 5883 352042 1.64 357925 132 5905 351613 1.65 357518 133 5866 353479 1.63 359345 134 5872 345802 1.67 351674 135 5833 338130 1.70 343963 136 5564 333782 1.64 339346 137 5515 333777 1.63 339292 138 5478 329316 1.64 334794 139 5548 321927 1.69 327475 140 5360 311769 1.69 317129 141 5387 312315 1.70 317702 142 5258 309773 1.67 315031 143 5014 299662 1.65 304676 144 5056 299622 1.66 304678 145 5037 294528 1.68 299565 146 5078 297034 1.68 302112 147 4986 288075 1.70 293061 148 5319 281706 1.85 287025 149 5533 279159 1.94 284692 150 5450 279086 1.92 284536 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 416853 1184734 26.03 1601587 2 373076 1620513 18.71 1993589 3 305968 1519160 16.76 1825128 4 247609 1711291 12.64 1958900 5 107274 2225525 4.60 2332799 6 85228 2646637 3.12 2731865 7 93894 3219049 2.83 3312943 8 81494 3196282 2.49 3277776 9 82221 2984395 2.68 3066616 10 72511 2939832 2.41 3012343 11 79186 2920938 2.64 3000124 12 66645 2920034 2.23 2986679 13 73267 3020861 2.37 3094128 14 65507 2989175 2.14 3054682 15 72403 2918937 2.42 2991340 16 64085 2847284 2.20 2911369 17 68775 2819785 2.38 2888560 18 59085 2871094 2.02 2930179 19 68662 2913996 2.30 2982658 20 59653 2933752 1.99 2993405 21 64159 2802763 2.24 2866922 22 57895 2820635 2.01 2878530 23 64994 2825413 2.25 2890407 24 55523 2817246 1.93 2872769 25 62813 2861174 2.15 2923987 26 55888 2861486 1.92 2917374 27 61094 2839693 2.11 2900787 28 55535 2879738 1.89 2935273 29 61462 2894113 2.08 2955575 30 53656 2874287 1.83 2927943 31 60693 2919806 2.04 2980499 32 54125 2861293 1.86 2915418 33 56713 2869409 1.94 2926122 34 52526 2884722 1.79 2937248 35 56990 2862028 1.95 2919018 36 50312 2853047 1.73 2903359 37 55348 2868073 1.89 2923421 38 49862 2854369 1.72 2904231 39 54301 2825410 1.89 2879711 40 48687 2817255 1.70 2865942 41 53504 2926974 1.80 2980478 42 47037 2822077 1.64 2869114 43 53260 2832892 1.85 2886152 44 47524 2833878 1.65 2881402 45 51659 2839496 1.79 2891155 46 46633 2828670 1.62 2875303 47 51460 2840648 1.78 2892108 48 45513 2796320 1.60 2841833 49 49968 2817538 1.74 2867506 50 46430 2813193 1.62 2859623 51 49764 2794497 1.75 2844261 52 45540 2772880 1.62 2818420 53 47742 2759893 1.70 2807635 54 44450 2717953 1.61 2762403 55 46686 2696477 1.70 2743163 56 44683 2706523 1.62 2751206 57 46120 2683494 1.69 2729614 58 44875 2723065 1.62 2767940 59 46903 2721751 1.69 2768654 60 42832 2635493 1.60 2678325 61 44443 2626903 1.66 2671346 62 42889 2658602 1.59 2701491 63 43655 2557767 1.68 2601422 64 41334 2541432 1.60 2582766 65 43472 2525554 1.69 2569026 66 39995 2521909 1.56 2561904 67 43621 2551983 1.68 2595604 68 40377 2478843 1.60 2519220 69 41512 2505741 1.63 2547253 70 39973 2460110 1.60 2500083 71 41463 2419491 1.68 2460954 72 39100 2400172 1.60 2439272 73 40564 2409240 1.66 2449804 74 39245 2432433 1.59 2471678 75 39323 2351255 1.64 2390578 76 38230 2320141 1.62 2358371 77 38961 2322656 1.65 2361617 78 38371 2353161 1.60 2391532 79 38749 2318909 1.64 2357658 80 36862 2259249 1.61 2296111 81 37421 2238602 1.64 2276023 82 36971 2245336 1.62 2282307 83 37445 2164307 1.70 2201752 84 34964 2140169 1.61 2175133 85 36025 2123648 1.67 2159673 86 34298 2115989 1.60 2150287 87 35734 2077446 1.69 2113180 88 34730 2094864 1.63 2129594 89 35927 2073604 1.70 2109531 90 33197 1998627 1.63 2031824 91 34833 1991225 1.72 2026058 92 32907 1969273 1.64 2002180 93 33118 1942787 1.68 1975905 94 32745 1927980 1.67 1960725 95 33091 1919309 1.69 1952400 96 31963 1938142 1.62 1970105 97 32314 1907985 1.67 1940299 98 31512 1836476 1.69 1867988 99 31069 1805583 1.69 1836652 100 31063 1782879 1.71 1813942 101 30917 1775234 1.71 1806151 102 29951 1764724 1.67 1794675 103 30651 1776433 1.70 1807084 104 29418 1740831 1.66 1770249 105 30035 1745049 1.69 1775084 106 28581 1686449 1.67 1715030 107 29038 1659441 1.72 1688479 108 28210 1663595 1.67 1691805 109 28699 1605308 1.76 1634007 110 27684 1593584 1.71 1621268 111 28759 1610651 1.75 1639410 112 27054 1561658 1.70 1588712 113 27493 1529826 1.77 1557319 114 26260 1518984 1.70 1545244 115 27029 1494980 1.78 1522009 116 25817 1471983 1.72 1497800 117 26042 1454928 1.76 1480970 118 25222 1431088 1.73 1456310 119 25560 1417184 1.77 1442744 120 25161 1396565 1.77 1421726 121 24917 1378774 1.78 1403691 122 25037 1363259 1.80 1388296 123 24139 1333657 1.78 1357796 124 23958 1317138 1.79 1341096 125 23902 1300674 1.80 1324576 126 23209 1283240 1.78 1306449 127 23482 1275640 1.81 1299122 128 22735 1243379 1.80 1266114 129 22569 1227996 1.80 1250565 130 22098 1211064 1.79 1233162 131 22364 1203370 1.82 1225734 132 20923 1175978 1.75 1196901 133 21570 1159859 1.83 1181429 134 20984 1142493 1.80 1163477 135 20693 1125995 1.80 1146688 136 20294 1112138 1.79 1132432 137 20377 1104013 1.81 1124390 138 20047 1093190 1.80 1113237 139 20176 1073209 1.85 1093385 140 19448 1048850 1.82 1068298 141 18872 1034365 1.79 1053237 142 19248 1023702 1.85 1042950 143 18402 1007561 1.79 1025963 144 18399 996175 1.81 1014574 145 18423 985532 1.84 1003955 146 18072 973240 1.82 991312 147 17889 965713 1.82 983602 148 18340 954701 1.88 973041 149 18826 945949 1.95 964775 150 18583 929338 1.96 947921 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47728 147519 24.44 195247 2 62573 249968 20.02 312541 3 55725 243925 18.60 299650 4 43374 199466 17.86 242840 5 26071 251559 9.39 277630 6 19927 159081 11.13 179008 7 18749 141974 11.67 160723 8 20614 149277 12.13 169891 9 20889 144694 12.62 165583 10 22617 137164 14.15 159781 11 23604 139402 14.48 163006 12 26367 139817 15.87 166184 13 25521 138879 15.52 164400 14 24452 134068 15.43 158520 15 24100 129754 15.66 153854 16 24421 129916 15.82 154337 17 28386 136412 17.22 164798 18 23711 126224 15.81 149935 19 22707 121710 15.72 144417 20 23389 121184 16.18 144573 21 23139 121797 15.96 144936 22 22893 117777 16.27 140670 23 21996 114147 16.16 136143 24 22290 117107 15.99 139397 25 23054 116889 16.47 139943 26 22141 112618 16.43 134759 27 21605 113018 16.05 134623 28 21027 108933 16.18 129960 29 20473 107258 16.03 127731 30 20497 104957 16.34 125454 31 19906 105294 15.90 125200 32 19561 102054 16.08 121615 33 19100 101100 15.89 120200 34 18983 98809 16.12 117792 35 18636 100392 15.66 119028 36 18053 103100 14.90 121153 37 18360 96395 16.00 114755 38 18279 94201 16.25 112480 39 18003 93003 16.22 111006 40 17033 89422 16.00 106455 41 17454 88548 16.47 106002 42 16815 89035 15.89 105850 43 16803 86552 16.26 103355 44 16719 85613 16.34 102332 45 15863 83617 15.95 99480 46 15669 82779 15.92 98448 47 15508 80651 16.13 96159 48 14988 79510 15.86 94498 49 15452 78420 16.46 93872 50 15082 77772 16.24 92854 51 14626 76979 15.97 91605 52 14125 75350 15.79 89475 53 13847 72565 16.02 86412 54 13720 72901 15.84 86621 55 13841 70723 16.37 84564 56 13479 69505 16.24 82984 57 13582 71553 15.95 85135 58 13101 68791 16.00 81892 59 12744 67167 15.95 79911 60 12442 66500 15.76 78942 61 12236 64783 15.89 77019 62 11819 62553 15.89 74372 63 11745 62073 15.91 73818 64 11598 61012 15.97 72610 65 11418 60652 15.84 72070 66 11317 59866 15.90 71183 67 11447 58770 16.30 70217 68 10766 57979 15.66 68745 69 10616 58015 15.47 68631 70 10500 55774 15.84 66274 71 10318 53745 16.11 64063 72 10244 53545 16.06 63789 73 9966 52770 15.89 62736 74 9867 51760 16.01 61627 75 9649 51891 15.68 61540 76 9615 50001 16.13 59616 77 9211 49868 15.59 59079 78 9004 48832 15.57 57836 79 8980 47674 15.85 56654 80 8996 47355 15.96 56351 81 8981 47047 16.03 56028 82 8828 46053 16.09 54881 83 8532 45682 15.74 54214 84 8531 45175 15.88 53706 85 8459 44304 16.03 52763 86 8118 43003 15.88 51121 87 8180 41876 16.34 50056 88 8151 41811 16.31 49962 89 7743 42102 15.53 49845 90 7672 41526 15.59 49198 91 7603 39639 16.09 47242 92 7280 39009 15.73 46289 93 7538 39854 15.91 47392 94 6934 37079 15.75 44013 95 6810 37084 15.51 43894 96 7016 37021 15.93 44037 97 6551 35211 15.69 41762 98 6656 35015 15.97 41671 99 6404 34510 15.65 40914 100 6272 34302 15.46 40574 101 6241 34358 15.37 40599 102 6116 33785 15.33 39901 103 6010 32253 15.71 38263 104 5915 31639 15.75 37554 105 5834 31365 15.68 37199 106 5794 31285 15.63 37079 107 5461 30335 15.26 35796 108 5705 31441 15.36 37146 109 5606 30178 15.67 35784 110 5347 29227 15.47 34574 111 5236 28943 15.32 34179 112 4994 27851 15.20 32845 113 5298 27897 15.96 33195 114 5181 27583 15.81 32764 115 5112 26880 15.98 31992 116 4774 26591 15.22 31365 117 4658 26549 14.93 31207 118 4613 25962 15.09 30575 119 4575 26173 14.88 30748 120 4471 24916 15.21 29387 121 4450 24181 15.54 28631 122 4585 24192 15.93 28777 123 4307 23321 15.59 27628 124 4499 23231 16.22 27730 125 4661 23883 16.33 28544 126 4323 22898 15.88 27221 127 4064 22182 15.48 26246 128 3868 21981 14.96 25849 129 3913 21451 15.43 25364 130 3819 21205 15.26 25024 131 3882 20612 15.85 24494 132 3690 20570 15.21 24260 133 3527 20060 14.95 23587 134 3670 19933 15.55 23603 135 3432 19323 15.08 22755 136 3609 19161 15.85 22770 137 3329 19300 14.71 22629 138 3350 18802 15.12 22152 139 3470 18525 15.78 21995 140 3411 18539 15.54 21950 141 3170 17627 15.24 20797 142 3010 17226 14.87 20236 143 3061 17308 15.03 20369 144 2947 17276 14.57 20223 145 2932 16684 14.95 19616 146 2924 17317 14.45 20241 147 3050 17296 14.99 20346 148 2860 16213 15.00 19073 149 2715 16104 14.43 18819 150 2540 15568 14.03 18108 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 73592 542692 11.94 616284 2 21465 165777 11.46 187242 3 20756 218408 8.68 239164 4 16522 253369 6.12 269891 5 5773 357702 1.59 363475 6 4962 431328 1.14 436290 7 4237 259414 1.61 263651 8 4007 241815 1.63 245822 9 4117 242420 1.67 246537 10 4155 225706 1.81 229861 11 4902 227722 2.11 232624 12 3560 232308 1.51 235868 13 3471 231459 1.48 234930 14 3237 223862 1.43 227099 15 3280 218057 1.48 221337 16 3266 214881 1.50 218147 17 2927 213753 1.35 216680 18 2905 227952 1.26 230857 19 2614 203461 1.27 206075 20 2686 208962 1.27 211648 21 2645 199835 1.31 202480 22 2338 196841 1.17 199179 23 2306 196195 1.16 198501 24 2324 190119 1.21 192443 25 2316 192193 1.19 194509 26 2169 190719 1.12 192888 27 2085 188056 1.10 190141 28 2111 185888 1.12 187999 29 2048 183102 1.11 185150 30 1946 183525 1.05 185471 31 1942 174635 1.10 176577 32 1837 167427 1.09 169264 33 1902 170810 1.10 172712 34 1845 170756 1.07 172601 35 1747 166963 1.04 168710 36 1660 161449 1.02 163109 37 1678 163184 1.02 164862 38 1734 156053 1.10 157787 39 1694 159925 1.05 161619 40 1617 150074 1.07 151691 41 1610 155695 1.02 157305 42 1589 150108 1.05 151697 43 1535 147691 1.03 149226 44 1460 140124 1.03 141584 45 1409 140114 1.00 141523 46 1427 135174 1.04 136601 47 1406 133758 1.04 135164 48 1422 133320 1.06 134742 49 1407 133674 1.04 135081 50 1380 130515 1.05 131895 51 1327 129735 1.01 131062 52 1335 125306 1.05 126641 53 1350 123286 1.08 124636 54 1228 119074 1.02 120302 55 1252 121086 1.02 122338 56 1229 118869 1.02 120098 57 1256 116312 1.07 117568 58 1180 112046 1.04 113226 59 1167 109369 1.06 110536 60 1200 112122 1.06 113322 61 1131 109568 1.02 110699 62 1130 109480 1.02 110610 63 1141 103322 1.09 104463 64 1082 102313 1.05 103395 65 1104 102427 1.07 103531 66 1043 100030 1.03 101073 67 1030 100703 1.01 101733 68 1091 97163 1.11 98254 69 1042 95510 1.08 96552 70 1012 95599 1.05 96611 71 978 93035 1.04 94013 72 1006 93164 1.07 94170 73 954 90060 1.05 91014 74 969 88390 1.08 89359 75 937 87507 1.06 88444 76 884 86886 1.01 87770 77 874 83756 1.03 84630 78 874 81890 1.06 82764 79 928 81656 1.12 82584 80 857 79896 1.06 80753 81 884 80227 1.09 81111 82 878 76500 1.13 77378 83 804 77331 1.03 78135 84 843 74406 1.12 75249 85 837 74455 1.11 75292 86 798 72294 1.09 73092 87 806 71008 1.12 71814 88 763 71201 1.06 71964 89 778 69605 1.11 70383 90 724 69345 1.03 70069 91 729 68248 1.06 68977 92 705 66607 1.05 67312 93 738 68006 1.07 68744 94 760 68830 1.09 69590 95 653 62168 1.04 62821 96 638 60090 1.05 60728 97 644 60730 1.05 61374 98 628 59187 1.05 59815 99 654 58611 1.10 59265 100 613 57179 1.06 57792 101 668 57337 1.15 58005 102 624 60779 1.02 61403 103 609 55196 1.09 55805 104 652 54762 1.18 55414 105 582 52569 1.09 53151 106 575 51724 1.10 52299 107 549 50974 1.07 51523 108 545 50284 1.07 50829 109 505 49232 1.02 49737 110 568 48354 1.16 48922 111 507 47399 1.06 47906 112 502 47470 1.05 47972 113 519 46528 1.10 47047 114 469 46811 0.99 47280 115 473 44260 1.06 44733 116 475 43738 1.07 44213 117 499 43063 1.15 43562 118 458 43148 1.05 43606 119 445 42337 1.04 42782 120 485 41191 1.16 41676 121 478 41296 1.14 41774 122 441 40052 1.09 40493 123 450 40281 1.10 40731 124 430 38998 1.09 39428 125 413 39282 1.04 39695 126 446 37808 1.17 38254 127 414 37197 1.10 37611 128 402 36294 1.10 36696 129 397 36509 1.08 36906 130 376 35070 1.06 35446 131 370 34616 1.06 34986 132 359 34615 1.03 34974 133 362 34105 1.05 34467 134 327 33399 0.97 33726 135 347 33381 1.03 33728 136 320 32401 0.98 32721 137 351 32434 1.07 32785 138 373 31293 1.18 31666 139 300 30970 0.96 31270 140 336 30236 1.10 30572 141 348 29909 1.15 30257 142 324 29668 1.08 29992 143 331 28652 1.14 28983 144 291 28593 1.01 28884 145 326 28388 1.14 28714 146 283 28595 0.98 28878 147 290 27320 1.05 27610 148 283 26472 1.06 26755 149 294 26692 1.09 26986 150 344 26225 1.29 26569 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 103944 340469 23.39 444413 2 102042 495094 17.09 597136 3 83392 454824 15.49 538216 4 68749 551658 11.08 620407 5 27445 667945 3.95 695390 6 22926 769901 2.89 792827 7 23632 934978 2.47 958610 8 22341 915652 2.38 937993 9 20842 840837 2.42 861679 10 19543 820147 2.33 839690 11 19656 801791 2.39 821447 12 17700 793340 2.18 811040 13 17502 819785 2.09 837287 14 16532 799394 2.03 815926 15 16530 777047 2.08 793577 16 15822 736328 2.10 752150 17 15283 721395 2.07 736678 18 14016 730377 1.88 744393 19 14484 729598 1.95 744082 20 13017 722011 1.77 735028 21 13191 675501 1.92 688692 22 11569 668424 1.70 679993 23 12250 663252 1.81 675502 24 10929 657001 1.64 667930 25 11506 656694 1.72 668200 26 10359 647007 1.58 657366 27 10393 631726 1.62 642119 28 10031 633155 1.56 643186 29 10210 626048 1.60 636258 30 9287 617861 1.48 627148 31 9586 623050 1.52 632636 32 9119 599990 1.50 609109 33 9043 594362 1.50 603405 34 8842 585715 1.49 594557 35 8804 574255 1.51 583059 36 8317 565950 1.45 574267 37 8577 561700 1.50 570277 38 7969 550197 1.43 558166 39 8298 540852 1.51 549150 40 7760 529435 1.44 537195 41 8065 540949 1.47 549014 42 7380 518409 1.40 525789 43 8258 515536 1.58 523794 44 7239 507150 1.41 514389 45 7758 502744 1.52 510502 46 7156 493024 1.43 500180 47 7447 486399 1.51 493846 48 6869 475581 1.42 482450 49 7124 474586 1.48 481710 50 6851 466385 1.45 473236 51 6964 461216 1.49 468180 52 6390 449862 1.40 456252 53 6744 442885 1.50 449629 54 6333 434268 1.44 440601 55 6191 425399 1.43 431590 56 6387 421549 1.49 427936 57 6193 413697 1.47 419890 58 6244 419219 1.47 425463 59 6318 416904 1.49 423222 60 5738 398502 1.42 404240 61 5881 391426 1.48 397307 62 5836 394036 1.46 399872 63 5751 374053 1.51 379804 64 5471 370085 1.46 375556 65 5766 365670 1.55 371436 66 5118 363342 1.39 368460 67 5695 367166 1.53 372861 68 5225 351900 1.46 357125 69 5399 353115 1.51 358514 70 5025 344406 1.44 349431 71 5155 338302 1.50 343457 72 4969 333719 1.47 338688 73 4956 332954 1.47 337910 74 4788 334133 1.41 338921 75 4817 319057 1.49 323874 76 4836 311745 1.53 316581 77 4639 312519 1.46 317158 78 4663 315750 1.46 320413 79 4504 311363 1.43 315867 80 4521 301760 1.48 306281 81 4452 297056 1.48 301508 82 4398 296329 1.46 300727 83 4378 283610 1.52 287988 84 4095 279699 1.44 283794 85 4247 274859 1.52 279106 86 3948 273259 1.42 277207 87 4146 268150 1.52 272296 88 3860 267938 1.42 271798 89 4120 264948 1.53 269068 90 3629 254350 1.41 257979 91 3790 253285 1.47 257075 92 3674 250541 1.45 254215 93 3702 244449 1.49 248151 94 3599 243544 1.46 247143 95 3584 240539 1.47 244123 96 3359 242204 1.37 245563 97 3537 239156 1.46 242693 98 3496 226791 1.52 230287 99 3218 222784 1.42 226002 100 3393 220063 1.52 223456 101 3287 218704 1.48 221991 102 3112 216318 1.42 219430 103 3191 216982 1.45 220173 104 3138 211594 1.46 214732 105 3226 211731 1.50 214957 106 2956 203255 1.43 206211 107 3008 198591 1.49 201599 108 2891 199128 1.43 202019 109 3045 191142 1.57 194187 110 2777 190258 1.44 193035 111 2989 191299 1.54 194288 112 2758 185436 1.47 188194 113 2688 181569 1.46 184257 114 2630 180444 1.44 183074 115 2675 176854 1.49 179529 116 2711 174027 1.53 176738 117 2527 171225 1.45 173752 118 2434 168314 1.43 170748 119 2572 165514 1.53 168086 120 2463 162164 1.50 164627 121 2395 159987 1.47 162382 122 2464 158297 1.53 160761 123 2252 155445 1.43 157697 124 2337 153380 1.50 155717 125 2354 150775 1.54 153129 126 2186 147817 1.46 150003 127 2241 146454 1.51 148695 128 2175 143075 1.50 145250 129 2129 141657 1.48 143786 130 2109 139275 1.49 141384 131 2112 138593 1.50 140705 132 1967 135303 1.43 137270 133 2065 133280 1.53 135345 134 1961 131671 1.47 133632 135 1901 129829 1.44 131730 136 1805 127763 1.39 129568 137 1905 126441 1.48 128346 138 1914 125486 1.50 127400 139 1846 122604 1.48 124450 140 1822 118810 1.51 120632 141 1781 117888 1.49 119669 142 1850 116686 1.56 118536 143 1725 115065 1.48 116790 144 1700 112863 1.48 114563 145 1665 111731 1.47 113396 146 1703 109287 1.53 110990 147 1671 108166 1.52 109837 148 1636 107891 1.49 109527 149 1720 105808 1.60 107528 150 1543 103545 1.47 105088