Using 24 threads for the top and bottom strand indexing processes each, so using 48 cores in total
Writing bisulfite genomes out into a single MFA (multi FastA) file

Bisulfite Genome Indexer version v0.24.0 (last modified: 19 May 2022)

Step I - Prepare genome folders - completed



Step II - Genome bisulfite conversions - completed


Bismark Genome Preparation - Step III: Launching the Bowtie 2 indexer
Preparing indexing of CT converted genome in /home/shared/8TB_HDD_03/sr320/github/ceasmallr/data/genome/Bisulfite_Genome/CT_conversion/
Building a SMALL index
Preparing indexing of GA converted genome in /home/shared/8TB_HDD_03/sr320/github/ceasmallr/data/genome/Bisulfite_Genome/GA_conversion/
Building a SMALL index

=========================================

Parallel genome indexing complete. Enjoy!