Using GATK jar /home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -jar /home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar GenotypeGVCFs -R /home/shared/8TB_HDD_01/sr320/github/ceabigr/data/Cvirginica_v300.fa -V gendb://GenomicsDB -O Cv-rnaseq_genotypes.vcf.gz 10:38:25.358 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar!/com/intel/gkl/native/libgkl_compression.so Jun 03, 2022 10:38:25 AM shaded.cloud_nio.com.google.auth.oauth2.ComputeEngineCredentials runningOnComputeEngine INFO: Failed to detect whether we are running on Google Compute Engine. 10:38:25.451 INFO GenotypeGVCFs - ------------------------------------------------------------ 10:38:25.451 INFO GenotypeGVCFs - The Genome Analysis Toolkit (GATK) v4.2.5.0 10:38:25.451 INFO GenotypeGVCFs - For support and documentation go to https://software.broadinstitute.org/gatk/ 10:38:25.451 INFO GenotypeGVCFs - Executing as sr320@raven on Linux v5.4.0-113-generic amd64 10:38:25.451 INFO GenotypeGVCFs - Java runtime: OpenJDK 64-Bit Server VM v11.0.15+10-Ubuntu-0ubuntu0.18.04.1 10:38:25.452 INFO GenotypeGVCFs - Start Date/Time: June 3, 2022 at 10:38:25 AM PDT 10:38:25.452 INFO GenotypeGVCFs - ------------------------------------------------------------ 10:38:25.452 INFO GenotypeGVCFs - ------------------------------------------------------------ 10:38:25.452 INFO GenotypeGVCFs - HTSJDK Version: 2.24.1 10:38:25.452 INFO GenotypeGVCFs - Picard Version: 2.25.4 10:38:25.452 INFO GenotypeGVCFs - Built for Spark Version: 2.4.5 10:38:25.452 INFO GenotypeGVCFs - HTSJDK Defaults.COMPRESSION_LEVEL : 2 10:38:25.452 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 10:38:25.452 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 10:38:25.452 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 10:38:25.452 INFO GenotypeGVCFs - Deflater: IntelDeflater 10:38:25.452 INFO GenotypeGVCFs - Inflater: IntelInflater 10:38:25.452 INFO GenotypeGVCFs - GCS max retries/reopens: 20 10:38:25.453 INFO GenotypeGVCFs - Requester pays: disabled 10:38:25.453 INFO GenotypeGVCFs - Initializing engine 10:38:25.838 INFO GenomicsDBLibLoader - GenomicsDB native library version : 1.4.3-6069e4a 10:38:26.126 info NativeGenomicsDB - pid=3225 tid=3226 No valid combination operation found for INFO field InbreedingCoeff - the field will NOT be part of INFO fields in the generated VCF records 10:38:26.126 info NativeGenomicsDB - pid=3225 tid=3226 No valid combination operation found for INFO field MLEAC - the field will NOT be part of INFO fields in the generated VCF records 10:38:26.126 info NativeGenomicsDB - pid=3225 tid=3226 No valid combination operation found for INFO field MLEAF - the field will NOT be part of INFO fields in the generated VCF records 10:38:26.387 INFO GenotypeGVCFs - Done initializing engine 10:38:26.449 INFO ProgressMeter - Starting traversal 10:38:26.450 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute 10:38:36.496 INFO ProgressMeter - NC_035780.1:146334 0.2 95000 567390.0 10:38:46.530 INFO ProgressMeter - NC_035780.1:347313 0.3 235000 702191.2 10:38:56.643 INFO ProgressMeter - NC_035780.1:558240 0.5 367000 729332.3 10:39:06.650 INFO ProgressMeter - NC_035780.1:752699 0.7 500000 746268.7 10:39:16.664 INFO ProgressMeter - NC_035780.1:938553 0.8 620000 740829.3 10:39:26.725 INFO ProgressMeter - NC_035780.1:1229690 1.0 763000 759518.9 10:39:36.760 INFO ProgressMeter - NC_035780.1:1495611 1.2 908000 774854.2 10:39:46.770 INFO ProgressMeter - NC_035780.1:1747199 1.3 1060000 791842.5 10:39:56.790 INFO ProgressMeter - NC_035780.1:1975150 1.5 1189000 789683.4 10:40:06.822 INFO ProgressMeter - NC_035780.1:2283769 1.7 1325000 792053.6 10:40:16.840 INFO ProgressMeter - NC_035780.1:2487151 1.8 1456000 791376.0 10:40:26.899 INFO ProgressMeter - NC_035780.1:2684331 2.0 1587000 790542.1 10:40:36.964 INFO ProgressMeter - NC_035780.1:2879107 2.2 1722000 791639.2 10:40:47.003 INFO ProgressMeter - NC_035780.1:3094453 2.3 1862000 794860.3 10:40:57.059 INFO ProgressMeter - NC_035780.1:3299738 2.5 2002000 797561.9 10:41:07.070 INFO ProgressMeter - NC_035780.1:3558046 2.7 2145000 801275.1 10:41:17.093 INFO ProgressMeter - NC_035780.1:3871771 2.8 2292000 805893.0 10:41:27.135 INFO ProgressMeter - NC_035780.1:4150145 3.0 2433000 807925.4 10:41:37.172 INFO ProgressMeter - NC_035780.1:4464309 3.2 2583000 812596.3 10:41:47.173 INFO ProgressMeter - NC_035780.1:4786598 3.3 2728000 815452.1 10:41:57.243 INFO ProgressMeter - NC_035780.1:5088059 3.5 2862000 814638.1 10:42:07.247 INFO ProgressMeter - NC_035780.1:5352175 3.7 2988000 811967.6 10:42:17.280 INFO ProgressMeter - NC_035780.1:5695497 3.8 3130000 813585.8 10:42:27.310 INFO ProgressMeter - NC_035780.1:5989144 4.0 3281000 817321.3 10:42:37.333 INFO ProgressMeter - NC_035780.1:6250236 4.2 3430000 820306.0 10:42:47.674 INFO ProgressMeter - NC_035780.1:6464249 4.4 3567000 819296.8 10:42:57.768 INFO ProgressMeter - NC_035780.1:6722634 4.5 3715000 821545.2 10:43:07.795 INFO ProgressMeter - NC_035780.1:7026441 4.7 3872000 825747.7 10:43:17.849 INFO ProgressMeter - NC_035780.1:7257164 4.9 4025000 828760.6 10:43:27.910 INFO ProgressMeter - NC_035780.1:7521350 5.0 4176000 831155.0 10:43:37.952 INFO ProgressMeter - NC_035780.1:7732053 5.2 4310000 830171.2 10:43:47.975 INFO ProgressMeter - NC_035780.1:8011832 5.4 4461000 832470.3 10:43:57.990 INFO ProgressMeter - NC_035780.1:8217507 5.5 4597000 831935.8 10:44:08.471 INFO ProgressMeter - NC_035780.1:8429384 5.7 4739000 831352.5 10:44:18.545 INFO ProgressMeter - NC_035780.1:8682050 5.9 4890000 833297.8 10:44:28.631 INFO ProgressMeter - NC_035780.1:8865683 6.0 5024000 832291.0 10:44:38.666 INFO ProgressMeter - NC_035780.1:9085468 6.2 5165000 832581.1 10:44:48.687 INFO ProgressMeter - NC_035780.1:9371820 6.4 5303000 832417.7 10:44:58.690 INFO ProgressMeter - NC_035780.1:9692768 6.5 5466000 836120.7 10:45:09.070 INFO ProgressMeter - NC_035780.1:10014688 6.7 5616000 836918.2 10:45:19.125 INFO ProgressMeter - NC_035780.1:10361483 6.9 5768000 838626.0 10:45:29.188 INFO ProgressMeter - NC_035780.1:10742110 7.0 5917000 839810.9 10:45:39.235 INFO ProgressMeter - NC_035780.1:10997414 7.2 6050000 838753.7 10:45:49.258 INFO ProgressMeter - NC_035780.1:11211727 7.4 6203000 840499.7 10:45:59.262 INFO ProgressMeter - NC_035780.1:11471872 7.5 6344000 840613.8 10:46:09.268 INFO ProgressMeter - NC_035780.1:11799758 7.7 6492000 841626.7 10:46:19.300 INFO ProgressMeter - NC_035780.1:12096577 7.9 6636000 842042.9 10:46:29.362 INFO ProgressMeter - NC_035780.1:12407759 8.0 6784000 842888.2 10:46:39.402 INFO ProgressMeter - NC_035780.1:12787140 8.2 6940000 844707.0 10:46:49.442 INFO ProgressMeter - NC_035780.1:13117730 8.4 7091000 845858.4 10:46:59.508 INFO ProgressMeter - NC_035780.1:13312000 8.6 7222000 844582.9 10:47:09.555 INFO ProgressMeter - NC_035780.1:13610380 8.7 7384000 846942.8 10:47:19.637 INFO ProgressMeter - NC_035780.1:13915149 8.9 7545000 849045.5 10:47:29.669 INFO ProgressMeter - NC_035780.1:14248648 9.1 7686000 848939.4 10:47:39.674 INFO ProgressMeter - NC_035780.1:14556030 9.2 7827000 848878.6 10:47:49.710 INFO ProgressMeter - NC_035780.1:14933536 9.4 7976000 849625.4 10:47:59.752 INFO ProgressMeter - NC_035780.1:15306737 9.6 8129000 850755.8 10:48:09.801 INFO ProgressMeter - NC_035780.1:15528854 9.7 8265000 850088.5 10:48:20.388 INFO ProgressMeter - NC_035780.1:15765202 9.9 8412000 849787.1 10:48:30.428 INFO ProgressMeter - NC_035780.1:15980659 10.1 8542000 848574.0 10:48:40.491 INFO ProgressMeter - NC_035780.1:16240848 10.2 8673000 847467.8 10:48:50.499 INFO ProgressMeter - NC_035780.1:16463219 10.4 8813000 847337.3 10:49:00.504 INFO ProgressMeter - NC_035780.1:16697538 10.6 8961000 847971.9 10:49:10.543 INFO ProgressMeter - NC_035780.1:16927652 10.7 9099000 847610.5 10:49:20.609 INFO ProgressMeter - NC_035780.1:17143752 10.9 9239000 847408.7 10:49:30.661 INFO ProgressMeter - NC_035780.1:17520200 11.1 9373000 846688.8 10:49:40.688 INFO ProgressMeter - NC_035780.1:17773167 11.2 9501000 845487.8 10:49:50.713 INFO ProgressMeter - NC_035780.1:18080043 11.4 9626000 844061.4 10:50:00.767 INFO ProgressMeter - NC_035780.1:18498114 11.6 9758000 843246.0 10:50:10.838 INFO ProgressMeter - NC_035780.1:18872197 11.7 9888000 842263.1 10:50:20.871 INFO ProgressMeter - NC_035780.1:19339822 11.9 10019000 841436.6 10:50:30.919 INFO ProgressMeter - NC_035780.1:19571021 12.1 10167000 842023.6 10:50:40.938 INFO ProgressMeter - NC_035780.1:19799596 12.2 10295000 840994.0 10:50:50.982 INFO ProgressMeter - NC_035780.1:20026107 12.4 10437000 841092.1 10:51:01.026 INFO ProgressMeter - NC_035780.1:20334831 12.6 10583000 841505.7 10:51:11.098 INFO ProgressMeter - NC_035780.1:20524834 12.7 10715000 840779.0 10:51:21.149 INFO ProgressMeter - NC_035780.1:20736068 12.9 10844000 839861.7 10:51:31.175 INFO ProgressMeter - NC_035780.1:21090961 13.1 10982000 839682.7 10:51:41.245 INFO ProgressMeter - NC_035780.1:21404820 13.2 11112000 838857.8 10:51:51.277 INFO ProgressMeter - NC_035780.1:21741963 13.4 11237000 837720.4 10:52:01.398 INFO ProgressMeter - NC_035780.1:21972733 13.6 11365000 836740.5 10:52:11.427 INFO ProgressMeter - NC_035780.1:22197666 13.7 11473000 834423.3 10:52:21.503 INFO ProgressMeter - NC_035780.1:22446888 13.9 11593000 832977.1 10:52:31.606 INFO ProgressMeter - NC_035780.1:22715951 14.1 11725000 832391.7 10:52:41.609 INFO ProgressMeter - NC_035780.1:22914009 14.3 11849000 831354.2 10:52:51.630 INFO ProgressMeter - NC_035780.1:23140404 14.4 11983000 831017.8 10:53:01.682 INFO ProgressMeter - NC_035780.1:23373347 14.6 12102000 829631.5 10:53:11.748 INFO ProgressMeter - NC_035780.1:23681722 14.8 12236000 829280.1 10:53:21.770 INFO ProgressMeter - NC_035780.1:23887805 14.9 12362000 828441.2 10:53:31.793 INFO ProgressMeter - NC_035780.1:24103085 15.1 12485000 827421.2 10:53:41.810 INFO ProgressMeter - NC_035780.1:24334740 15.3 12607000 826363.4 10:53:51.881 INFO ProgressMeter - NC_035780.1:24603985 15.4 12722000 824826.5 10:54:01.936 INFO ProgressMeter - NC_035780.1:24869002 15.6 12847000 823978.1 10:54:11.968 INFO ProgressMeter - NC_035780.1:25135555 15.8 12987000 824119.7 10:54:22.002 INFO ProgressMeter - NC_035780.1:25375624 15.9 13117000 823628.6 10:54:32.030 INFO ProgressMeter - NC_035780.1:25578455 16.1 13242000 822842.2 10:54:42.089 INFO ProgressMeter - NC_035780.1:25823323 16.3 13383000 823029.8 10:54:52.170 INFO ProgressMeter - NC_035780.1:26021777 16.4 13518000 822830.0 10:55:02.194 INFO ProgressMeter - NC_035780.1:26242276 16.6 13648000 822380.0 10:55:12.220 INFO ProgressMeter - NC_035780.1:26514198 16.8 13777000 821877.8 10:55:22.275 INFO ProgressMeter - NC_035780.1:26744474 16.9 13906000 821361.9 10:55:32.311 INFO ProgressMeter - NC_035780.1:27020150 17.1 14044000 821397.8 10:55:42.365 INFO ProgressMeter - NC_035780.1:27254795 17.3 14188000 821766.3 10:55:52.400 INFO ProgressMeter - NC_035780.1:27455097 17.4 14322000 821568.9 10:56:02.431 INFO ProgressMeter - NC_035780.1:27642355 17.6 14439000 820412.5 10:56:12.460 INFO ProgressMeter - NC_035780.1:27865722 17.8 14573000 820236.2 10:56:22.470 INFO ProgressMeter - NC_035780.1:28098733 17.9 14710000 820245.0 10:56:32.499 INFO ProgressMeter - NC_035780.1:28338124 18.1 14856000 820736.4 10:56:42.547 INFO ProgressMeter - NC_035780.1:28541515 18.3 14984000 820219.4 10:56:52.602 INFO ProgressMeter - NC_035780.1:28791913 18.4 15120000 820140.5 10:57:02.626 INFO ProgressMeter - NC_035780.1:29137681 18.6 15267000 820677.8 10:57:12.674 INFO ProgressMeter - NC_035780.1:29412000 18.8 15406000 820760.3 10:57:22.756 INFO ProgressMeter - NC_035780.1:29615788 18.9 15530000 820025.6 10:57:32.793 INFO ProgressMeter - NC_035780.1:29857558 19.1 15670000 820173.4 10:57:42.847 INFO ProgressMeter - NC_035780.1:30071922 19.3 15798000 819683.9 10:57:52.881 INFO ProgressMeter - NC_035780.1:30282873 19.4 15930000 819422.7 10:58:02.895 INFO ProgressMeter - NC_035780.1:30553953 19.6 16052000 818669.8 10:58:12.909 INFO ProgressMeter - NC_035780.1:30763195 19.8 16184000 818435.4 10:58:22.961 INFO ProgressMeter - NC_035780.1:30997049 19.9 16315000 818128.7 10:58:33.040 INFO ProgressMeter - NC_035780.1:31286213 20.1 16455000 818256.4 10:58:43.043 INFO ProgressMeter - NC_035780.1:31506392 20.3 16578000 817594.7 10:58:53.065 INFO ProgressMeter - NC_035780.1:31734553 20.4 16726000 818154.0 10:59:03.095 INFO ProgressMeter - NC_035780.1:31987402 20.6 16859000 817971.2 10:59:13.172 INFO ProgressMeter - NC_035780.1:32207866 20.8 16984000 817375.5 10:59:23.243 INFO ProgressMeter - NC_035780.1:32404956 20.9 17118000 817222.9 10:59:33.268 INFO ProgressMeter - NC_035780.1:32622196 21.1 17229000 816013.0 10:59:43.288 INFO ProgressMeter - NC_035780.1:32803876 21.3 17349000 815248.3 10:59:53.294 INFO ProgressMeter - NC_035780.1:33021068 21.4 17489000 815436.8 11:00:03.310 INFO ProgressMeter - NC_035780.1:33263169 21.6 17635000 815893.8 11:00:13.428 INFO ProgressMeter - NC_035780.1:33476628 21.8 17786000 816509.5 11:00:23.433 INFO ProgressMeter - NC_035780.1:33730795 21.9 17926000 816684.8 11:00:33.485 INFO ProgressMeter - NC_035780.1:33956493 22.1 18059000 816512.0 11:00:43.547 INFO ProgressMeter - NC_035780.1:34186088 22.3 18197000 816560.1 11:00:53.547 INFO ProgressMeter - NC_035780.1:34424638 22.5 18319000 815932.3 11:01:03.622 INFO ProgressMeter - NC_035780.1:34668390 22.6 18455000 815887.7 11:01:13.656 INFO ProgressMeter - NC_035780.1:34878958 22.8 18586000 815648.8 11:01:23.736 INFO ProgressMeter - NC_035780.1:35103506 23.0 18725000 815734.7 11:01:33.767 INFO ProgressMeter - NC_035780.1:35382146 23.1 18863000 815804.9 11:01:43.774 INFO ProgressMeter - NC_035780.1:35611213 23.3 18989000 815372.8 11:01:53.803 INFO ProgressMeter - NC_035780.1:35869583 23.5 19139000 815957.9 11:02:03.870 INFO ProgressMeter - NC_035780.1:36072772 23.6 19266000 815538.1 11:02:13.889 INFO ProgressMeter - NC_035780.1:36285343 23.8 19402000 815530.5 11:02:23.905 INFO ProgressMeter - NC_035780.1:36601359 24.0 19531000 815232.5 11:02:33.938 INFO ProgressMeter - NC_035780.1:36875845 24.1 19670000 815343.5 11:02:43.971 INFO ProgressMeter - NC_035780.1:37191888 24.3 19805000 815288.4 11:02:54.023 INFO ProgressMeter - NC_035780.1:37557668 24.5 19951000 815673.2 11:03:04.056 INFO ProgressMeter - NC_035780.1:37903229 24.6 20093000 815900.9 11:03:14.059 INFO ProgressMeter - NC_035780.1:38098088 24.8 20221000 815577.2 11:03:24.107 INFO ProgressMeter - NC_035780.1:38308344 25.0 20348000 815193.9 11:03:34.130 INFO ProgressMeter - NC_035780.1:38590676 25.1 20493000 815544.4 11:03:44.131 INFO ProgressMeter - NC_035780.1:38935391 25.3 20640000 815981.8 11:03:54.166 INFO ProgressMeter - NC_035780.1:39231138 25.5 20771000 815766.8 11:04:04.189 INFO ProgressMeter - NC_035780.1:39471841 25.6 20912000 815951.2 11:04:14.190 INFO ProgressMeter - NC_035780.1:39702685 25.8 21046000 815873.5 11:04:24.196 INFO ProgressMeter - NC_035780.1:39941746 26.0 21186000 816025.2 11:04:34.203 INFO ProgressMeter - NC_035780.1:40125895 26.1 21323000 816059.7 11:04:44.213 INFO ProgressMeter - NC_035780.1:40364345 26.3 21478000 816776.7 11:04:54.222 INFO ProgressMeter - NC_035780.1:40594738 26.5 21641000 817787.4 11:05:04.244 INFO ProgressMeter - NC_035780.1:40841080 26.6 21807000 818891.5 11:05:14.298 INFO ProgressMeter - NC_035780.1:41074096 26.8 21963000 819592.4 11:05:24.339 INFO ProgressMeter - NC_035780.1:41335655 27.0 22134000 820847.4 11:05:34.368 INFO ProgressMeter - NC_035780.1:41565627 27.1 22305000 822093.0 11:05:44.410 INFO ProgressMeter - NC_035780.1:41787024 27.3 22464000 822877.2 11:05:54.414 INFO ProgressMeter - NC_035780.1:42019598 27.5 22630000 823925.8 11:06:04.465 INFO ProgressMeter - NC_035780.1:42254386 27.6 22790000 824721.1 11:06:14.710 INFO ProgressMeter - NC_035780.1:42505584 27.8 22940000 825051.3 11:06:24.762 INFO ProgressMeter - NC_035780.1:42733888 28.0 23082000 825186.3 11:06:34.852 INFO ProgressMeter - NC_035780.1:42935133 28.1 23222000 825230.0 11:06:44.888 INFO ProgressMeter - NC_035780.1:43114227 28.3 23352000 824946.2 11:06:54.892 INFO ProgressMeter - NC_035780.1:43375497 28.5 23483000 824716.3 11:07:04.920 INFO ProgressMeter - NC_035780.1:43708733 28.6 23627000 824931.5 11:07:14.982 INFO ProgressMeter - NC_035780.1:44059276 28.8 23785000 825613.9 11:07:25.015 INFO ProgressMeter - NC_035780.1:44436365 29.0 23922000 825577.4 11:07:35.079 INFO ProgressMeter - NC_035780.1:44748111 29.1 24069000 825870.3 11:07:45.125 INFO ProgressMeter - NC_035780.1:45008419 29.3 24210000 825963.2 11:07:55.181 INFO ProgressMeter - NC_035780.1:45362152 29.5 24356000 826219.5 11:08:05.235 INFO ProgressMeter - NC_035780.1:45783746 29.6 24493000 826170.7 11:08:15.290 INFO ProgressMeter - NC_035780.1:46108928 29.8 24656000 826994.0 11:08:25.338 INFO ProgressMeter - NC_035780.1:46470300 30.0 24802000 827244.4 11:08:35.366 INFO ProgressMeter - NC_035780.1:46777184 30.1 24936000 827103.1 11:08:45.437 INFO ProgressMeter - NC_035780.1:47010904 30.3 25070000 826943.8 11:08:55.440 INFO ProgressMeter - NC_035780.1:47208826 30.5 25195000 826521.7 11:09:05.441 INFO ProgressMeter - NC_035780.1:47416428 30.6 25318000 826039.9 11:09:15.506 INFO ProgressMeter - NC_035780.1:47740466 30.8 25452000 825891.7 11:09:25.539 INFO ProgressMeter - 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NC_035783.1:2297172 135.8 111099000 818295.7 12:54:22.625 INFO ProgressMeter - NC_035783.1:2508183 135.9 111245000 818361.5 12:54:32.636 INFO ProgressMeter - NC_035783.1:2718576 136.1 111386000 818394.3 12:54:42.663 INFO ProgressMeter - NC_035783.1:2931399 136.3 111525000 818410.7 12:54:52.700 INFO ProgressMeter - NC_035783.1:3146812 136.4 111667000 818448.0 12:55:02.707 INFO ProgressMeter - NC_035783.1:3362722 136.6 111803000 818444.3 12:55:12.780 INFO ProgressMeter - NC_035783.1:3634245 136.8 111948000 818499.9 12:55:22.830 INFO ProgressMeter - NC_035783.1:3986818 136.9 112095000 818572.2 12:55:32.844 INFO ProgressMeter - NC_035783.1:4340494 137.1 112250000 818706.2 12:55:42.878 INFO ProgressMeter - NC_035783.1:4638343 137.3 112399000 818794.3 12:55:52.891 INFO ProgressMeter - NC_035783.1:4964396 137.4 112548000 818884.2 12:56:02.932 INFO ProgressMeter - NC_035783.1:5258366 137.6 112692000 818934.7 12:56:12.941 INFO ProgressMeter - NC_035783.1:5502457 137.8 112831000 818952.1 12:56:22.945 INFO ProgressMeter - NC_035783.1:5746771 137.9 112965000 818933.6 12:56:32.993 INFO ProgressMeter - NC_035783.1:5950356 138.1 113107000 818968.8 12:56:42.995 INFO ProgressMeter - NC_035783.1:6280481 138.3 113252000 819030.1 12:56:53.036 INFO ProgressMeter - NC_035783.1:6654021 138.4 113403000 819130.7 12:57:03.085 INFO ProgressMeter - NC_035783.1:7025407 138.6 113548000 819187.1 12:57:13.114 INFO ProgressMeter - NC_035783.1:7388984 138.8 113691000 819230.8 12:57:23.150 INFO ProgressMeter - NC_035783.1:7614217 138.9 113834000 819273.8 12:57:33.189 INFO ProgressMeter - NC_035783.1:7842283 139.1 113992000 819424.2 12:57:43.253 INFO ProgressMeter - NC_035783.1:8067586 139.3 114133000 819449.7 12:57:53.286 INFO ProgressMeter - NC_035783.1:8318853 139.4 114283000 819542.8 12:58:03.313 INFO ProgressMeter - NC_035783.1:8561752 139.6 114432000 819629.0 12:58:13.382 INFO ProgressMeter - NC_035783.1:8753064 139.8 114576000 819675.2 12:58:23.420 INFO ProgressMeter - NC_035783.1:9060453 139.9 114711000 819659.9 12:58:33.466 INFO ProgressMeter - NC_035783.1:9361275 140.1 114857000 819722.5 12:58:43.492 INFO ProgressMeter - NC_035783.1:9576775 140.3 115004000 819793.9 12:58:53.492 INFO ProgressMeter - NC_035783.1:9765094 140.5 115144000 819817.9 12:59:03.497 INFO ProgressMeter - NC_035783.1:9972046 140.6 115278000 819798.7 12:59:13.507 INFO ProgressMeter - NC_035783.1:10197176 140.8 115429000 819899.8 12:59:23.575 INFO ProgressMeter - NC_035783.1:10398186 141.0 115566000 819895.7 12:59:33.592 INFO ProgressMeter - NC_035783.1:10599573 141.1 115712000 819960.3 12:59:43.660 INFO ProgressMeter - NC_035783.1:10748879 141.3 115822000 819765.0 12:59:53.704 INFO ProgressMeter - NC_035783.1:10937243 141.5 115947000 819678.5 13:00:03.716 INFO ProgressMeter - NC_035783.1:11112714 141.6 116082000 819666.0 13:00:13.758 INFO ProgressMeter - NC_035783.1:11406129 141.8 116222000 819685.9 13:00:23.785 INFO ProgressMeter - NC_035783.1:11683118 142.0 116355000 819657.8 13:00:33.813 INFO ProgressMeter - NC_035783.1:11930106 142.1 116491000 819650.8 13:00:43.860 INFO ProgressMeter - NC_035783.1:12105461 142.3 116625000 819628.0 13:00:53.886 INFO ProgressMeter - NC_035783.1:12286996 142.5 116749000 819537.0 13:01:03.898 INFO ProgressMeter - NC_035783.1:12482598 142.6 116892000 819580.8 13:01:13.962 INFO ProgressMeter - NC_035783.1:12730194 142.8 117032000 819598.5 13:01:24.007 INFO ProgressMeter - NC_035783.1:12932958 143.0 117175000 819639.0 13:01:34.034 INFO ProgressMeter - NC_035783.1:13139235 143.1 117310000 819625.2 13:01:44.076 INFO ProgressMeter - NC_035783.1:13385313 143.3 117454000 819672.8 13:01:54.093 INFO ProgressMeter - NC_035783.1:13623687 143.5 117598000 819722.7 13:02:04.097 INFO ProgressMeter - NC_035783.1:13852654 143.6 117739000 819752.8 13:02:14.143 INFO ProgressMeter - NC_035783.1:14051011 143.8 117875000 819744.0 13:02:24.195 INFO ProgressMeter - NC_035783.1:14244526 144.0 118016000 819769.5 13:02:34.221 INFO ProgressMeter - NC_035783.1:14425016 144.1 118154000 819776.6 13:02:44.263 INFO ProgressMeter - NC_035783.1:14644541 144.3 118303000 819858.3 13:02:54.283 INFO ProgressMeter - NC_035783.1:14856678 144.5 118441000 819865.8 13:03:04.359 INFO ProgressMeter - NC_035783.1:15060681 144.6 118582000 819888.8 13:03:14.377 INFO ProgressMeter - NC_035783.1:15252282 144.8 118723000 819917.1 13:03:24.403 INFO ProgressMeter - NC_035783.1:15460983 145.0 118871000 819992.9 13:03:34.409 INFO ProgressMeter - NC_035783.1:15684195 145.1 119005000 819974.0 13:03:44.464 INFO ProgressMeter - NC_035783.1:15870337 145.3 119137000 819936.7 13:03:54.512 INFO ProgressMeter - NC_035783.1:16109343 145.5 119276000 819948.3 13:04:04.537 INFO ProgressMeter - NC_035783.1:16319614 145.6 119407000 819907.1 13:04:14.593 INFO ProgressMeter - NC_035783.1:16522008 145.8 119547000 819924.9 13:04:24.627 INFO ProgressMeter - NC_035783.1:16726199 146.0 119687000 819944.6 13:04:34.662 INFO ProgressMeter - NC_035783.1:16929131 146.1 119832000 819998.4 13:04:44.724 INFO ProgressMeter - NC_035783.1:17163402 146.3 119987000 820117.9 13:04:54.749 INFO ProgressMeter - NC_035783.1:17359311 146.5 120124000 820117.7 13:05:04.817 INFO ProgressMeter - NC_035783.1:17531817 146.6 120247000 820018.1 13:05:14.888 INFO ProgressMeter - NC_035783.1:17716379 146.8 120384000 820013.7 13:05:24.938 INFO ProgressMeter - NC_035783.1:17902132 147.0 120526000 820045.3 13:05:34.959 INFO ProgressMeter - NC_035783.1:18100992 147.1 120658000 820011.6 13:05:44.985 INFO ProgressMeter - NC_035783.1:18293854 147.3 120782000 819923.2 13:05:55.060 INFO ProgressMeter - NC_035783.1:18478269 147.5 120923000 819945.7 13:06:05.084 INFO ProgressMeter - NC_035783.1:18671362 147.6 121048000 819864.6 13:06:15.084 INFO ProgressMeter - NC_035783.1:18935912 147.8 121192000 819914.3 13:06:25.084 INFO ProgressMeter - NC_035783.1:19118400 148.0 121325000 819889.6 13:06:35.107 INFO ProgressMeter - NC_035783.1:19334664 148.1 121472000 819957.4 13:06:45.192 INFO ProgressMeter - NC_035783.1:19515048 148.3 121598000 819877.7 13:06:55.222 INFO ProgressMeter - NC_035783.1:19706745 148.5 121732000 819857.1 13:07:05.267 INFO ProgressMeter - NC_035783.1:19891246 148.6 121862000 819808.3 13:07:15.418 INFO ProgressMeter - NC_035783.1:20066689 148.8 121992000 819749.8 13:07:25.421 INFO ProgressMeter - NC_035783.1:20277429 149.0 122128000 819745.4 13:07:35.474 INFO ProgressMeter - NC_035783.1:20453791 149.2 122248000 819629.0 13:07:45.535 INFO ProgressMeter - NC_035783.1:20664737 149.3 122380000 819592.6 13:07:55.774 INFO ProgressMeter - NC_035783.1:20819988 149.5 122497000 819439.7 13:08:05.787 INFO ProgressMeter - NC_035783.1:20999691 149.7 122630000 819414.6 13:08:15.827 INFO ProgressMeter - NC_035783.1:21203180 149.8 122764000 819393.8 13:08:25.909 INFO ProgressMeter - NC_035783.1:21436827 150.0 122919000 819509.4 13:08:36.455 INFO ProgressMeter - NC_035783.1:21674335 150.2 123059000 819482.3 13:08:46.473 INFO ProgressMeter - NC_035783.1:21958647 150.3 123197000 819490.1 13:08:56.493 INFO ProgressMeter - NC_035783.1:22241866 150.5 123335000 819497.8 13:09:06.533 INFO ProgressMeter - NC_035783.1:22533193 150.7 123474000 819510.2 13:09:16.570 INFO ProgressMeter - NC_035783.1:22817299 150.8 123613000 819522.8 13:09:26.623 INFO ProgressMeter - NC_035783.1:22998549 151.0 123733000 819408.2 13:09:36.649 INFO ProgressMeter - NC_035783.1:23227221 151.2 123868000 819395.5 13:09:46.667 INFO ProgressMeter - NC_035783.1:23468915 151.3 124001000 819370.3 13:09:56.762 INFO ProgressMeter - NC_035783.1:23694946 151.5 124137000 819358.0 13:10:06.792 INFO ProgressMeter - NC_035783.1:23908979 151.7 124261000 819272.5 13:10:16.840 INFO ProgressMeter - NC_035783.1:24168038 151.8 124407000 819330.5 13:10:26.857 INFO ProgressMeter - NC_035783.1:24409572 152.0 124542000 819318.7 13:10:36.911 INFO ProgressMeter - NC_035783.1:24628752 152.2 124667000 819237.9 13:10:46.924 INFO ProgressMeter - NC_035783.1:24879867 152.3 124816000 819318.6 13:10:56.969 INFO ProgressMeter - NC_035783.1:25136773 152.5 124950000 819297.8 13:11:06.970 INFO ProgressMeter - NC_035783.1:25350143 152.7 125071000 819195.9 13:11:17.023 INFO ProgressMeter - NC_035783.1:25551134 152.8 125191000 819083.0 13:11:27.044 INFO ProgressMeter - NC_035783.1:25924078 153.0 125323000 819051.6 13:11:37.055 INFO ProgressMeter - NC_035783.1:26197787 153.2 125450000 818988.5 13:11:47.108 INFO ProgressMeter - NC_035783.1:26534872 153.3 125597000 819052.3 13:11:57.155 INFO ProgressMeter - NC_035783.1:26877024 153.5 125746000 819129.5 13:12:07.199 INFO ProgressMeter - NC_035783.1:27195478 153.7 125887000 819154.7 13:12:17.239 INFO ProgressMeter - NC_035783.1:27499724 153.8 126026000 819167.2 13:12:27.260 INFO ProgressMeter - NC_035783.1:27800279 154.0 126153000 819103.5 13:12:37.343 INFO ProgressMeter - NC_035783.1:28026424 154.2 126291000 819105.8 13:12:47.409 INFO ProgressMeter - NC_035783.1:28242914 154.3 126423000 819070.7 13:12:57.443 INFO ProgressMeter - NC_035783.1:28479424 154.5 126561000 819077.3 13:13:07.491 INFO ProgressMeter - NC_035783.1:28669019 154.7 126685000 818992.2 13:13:17.497 INFO ProgressMeter - NC_035783.1:28963822 154.9 126824000 819007.8 13:13:27.590 INFO ProgressMeter - NC_035783.1:29226609 155.0 126960000 818996.4 13:13:37.610 INFO ProgressMeter - NC_035783.1:29574587 155.2 127100000 819017.2 13:13:47.663 INFO ProgressMeter - NC_035783.1:29855311 155.4 127234000 818996.4 13:13:57.671 INFO ProgressMeter - NC_035783.1:30083356 155.5 127374000 819018.2 13:14:07.688 INFO ProgressMeter - NC_035783.1:30336293 155.7 127521000 819084.2 13:14:17.705 INFO ProgressMeter - NC_035783.1:30563029 155.9 127658000 819085.8 13:14:27.708 INFO ProgressMeter - NC_035783.1:30751012 156.0 127793000 819075.8 13:14:37.757 INFO ProgressMeter - NC_035783.1:30978119 156.2 127914000 818972.2 13:14:47.790 INFO ProgressMeter - NC_035783.1:31266744 156.4 128052000 818979.0 13:14:57.864 INFO ProgressMeter - NC_035783.1:31519969 156.5 128182000 818931.0 13:15:07.880 INFO ProgressMeter - NC_035783.1:31796300 156.7 128326000 818977.5 13:15:17.912 INFO ProgressMeter - NC_035783.1:32001740 156.9 128453000 818914.2 13:15:27.978 INFO ProgressMeter - NC_035783.1:32227243 157.0 128597000 818956.3 13:15:38.020 INFO ProgressMeter - NC_035783.1:32447503 157.2 128743000 819013.2 13:15:48.041 INFO ProgressMeter - NC_035783.1:32647549 157.4 128874000 818976.4 13:15:58.053 INFO ProgressMeter - NC_035783.1:32899419 157.5 129013000 818991.2 13:16:08.090 INFO ProgressMeter - NC_035783.1:33224407 157.7 129155000 819022.9 13:16:18.139 INFO ProgressMeter - NC_035783.1:33515702 157.9 129292000 819021.8 13:16:28.179 INFO ProgressMeter - NC_035783.1:33824172 158.0 129427000 819008.9 13:16:38.200 INFO ProgressMeter - NC_035783.1:34074423 158.2 129554000 818947.0 13:16:48.251 INFO ProgressMeter - NC_035783.1:34407986 158.4 129693000 818958.4 13:16:58.289 INFO ProgressMeter - NC_035783.1:34612561 158.5 129817000 818876.3 13:17:08.299 INFO ProgressMeter - NC_035783.1:34790201 158.7 129942000 818803.2 13:17:18.400 INFO ProgressMeter - NC_035783.1:35023103 158.9 130069000 818734.9 13:17:28.445 INFO ProgressMeter - NC_035783.1:35216769 159.0 130190000 818633.8 13:17:38.496 INFO ProgressMeter - NC_035783.1:35440869 159.2 130323000 818607.9 13:17:48.507 INFO ProgressMeter - NC_035783.1:35651249 159.4 130451000 818554.0 13:17:58.534 INFO ProgressMeter - NC_035783.1:35830489 159.5 130575000 818473.8 13:18:08.543 INFO ProgressMeter - NC_035783.1:36063671 159.7 130704000 818426.6 13:18:18.574 INFO ProgressMeter - NC_035783.1:36282371 159.9 130839000 818415.2 13:18:28.622 INFO ProgressMeter - NC_035783.1:36454385 160.0 130955000 818283.6 13:18:38.638 INFO ProgressMeter - NC_035783.1:36681861 160.2 131092000 818286.1 13:18:48.644 INFO ProgressMeter - NC_035783.1:36886866 160.4 131220000 818233.3 13:18:58.712 INFO ProgressMeter - NC_035783.1:37155194 160.5 131357000 818231.5 13:19:08.773 INFO ProgressMeter - NC_035783.1:37475278 160.7 131500000 818267.5 13:19:18.828 INFO ProgressMeter - NC_035783.1:37825461 160.9 131659000 818403.5 13:19:28.832 INFO ProgressMeter - NC_035783.1:38131852 161.0 131806000 818469.0 13:19:38.843 INFO ProgressMeter - NC_035783.1:38511475 161.2 131951000 818521.3 13:19:48.866 INFO ProgressMeter - NC_035783.1:38763500 161.4 132098000 818584.9 13:19:58.928 INFO ProgressMeter - NC_035783.1:39106241 161.5 132249000 818669.9 13:20:09.038 INFO ProgressMeter - NC_035783.1:39486452 161.7 132397000 818732.1 13:20:19.065 INFO ProgressMeter - NC_035783.1:39796573 161.9 132534000 818733.2 13:20:29.071 INFO ProgressMeter - NC_035783.1:40096937 162.0 132683000 818810.1 13:20:39.121 INFO ProgressMeter - NC_035783.1:40394039 162.2 132826000 818846.1 13:20:49.152 INFO ProgressMeter - NC_035783.1:40753153 162.4 132969000 818883.7 13:20:59.159 INFO ProgressMeter - NC_035783.1:41051894 162.5 133119000 818966.3 13:21:09.169 INFO ProgressMeter - NC_035783.1:41392648 162.7 133265000 819023.9 13:21:19.233 INFO ProgressMeter - NC_035783.1:41684333 162.9 133412000 819083.0 13:21:29.239 INFO ProgressMeter - NC_035783.1:41986808 163.0 133549000 819085.4 13:21:39.327 INFO ProgressMeter - NC_035783.1:42306184 163.2 133692000 819117.8 13:21:49.356 INFO ProgressMeter - NC_035783.1:42474329 163.4 133810000 819002.0 13:21:59.402 INFO ProgressMeter - NC_035783.1:42698299 163.5 133951000 819025.7 13:22:09.445 INFO ProgressMeter - NC_035783.1:42924168 163.7 134090000 819037.4 13:22:19.461 INFO ProgressMeter - NC_035783.1:43151332 163.9 134233000 819075.7 13:22:29.486 INFO ProgressMeter - NC_035783.1:43396891 164.1 134369000 819070.5 13:22:39.565 INFO ProgressMeter - NC_035783.1:43712250 164.2 134531000 819219.1 13:22:49.572 INFO ProgressMeter - NC_035783.1:44022617 164.4 134675000 819263.9 13:22:59.587 INFO ProgressMeter - NC_035783.1:44262290 164.6 134808000 819241.1 13:23:10.348 INFO ProgressMeter - NC_035783.1:44478650 164.7 134953000 819229.4 13:23:20.384 INFO ProgressMeter - NC_035783.1:44721123 164.9 135104000 819314.1 13:23:30.413 INFO ProgressMeter - NC_035783.1:44951404 165.1 135241000 819314.5 13:23:40.451 INFO ProgressMeter - NC_035783.1:45146194 165.2 135374000 819289.8 13:23:50.500 INFO ProgressMeter - NC_035783.1:45354433 165.4 135520000 819342.9 13:24:00.501 INFO ProgressMeter - NC_035783.1:45583197 165.6 135674000 819448.2 13:24:10.517 INFO ProgressMeter - NC_035783.1:45823306 165.7 135843000 819642.5 13:24:20.552 INFO ProgressMeter - NC_035783.1:46070861 165.9 136010000 819822.8 13:24:30.619 INFO ProgressMeter - NC_035783.1:46301316 166.1 136172000 819970.0 13:24:40.680 INFO ProgressMeter - NC_035783.1:46576129 166.2 136313000 819991.1 13:24:50.708 INFO ProgressMeter - NC_035783.1:46760654 166.4 136444000 819954.8 13:25:00.716 INFO ProgressMeter - NC_035783.1:46990053 166.6 136581000 819956.2 13:25:10.738 INFO ProgressMeter - NC_035783.1:47279872 166.7 136725000 819998.4 13:25:20.762 INFO ProgressMeter - NC_035783.1:47525528 166.9 136899000 820220.1 13:25:30.795 INFO ProgressMeter - NC_035783.1:47866851 167.1 137058000 820350.9 13:25:40.820 INFO ProgressMeter - NC_035783.1:48131503 167.2 137207000 820422.2 13:25:50.836 INFO ProgressMeter - NC_035783.1:48341797 167.4 137360000 820518.0 13:26:00.856 INFO ProgressMeter - NC_035783.1:48554131 167.6 137517000 820637.2 13:26:10.880 INFO ProgressMeter - NC_035783.1:48907333 167.7 137676000 820767.8 13:26:20.924 INFO ProgressMeter - NC_035783.1:49116163 167.9 137812000 820759.5 Chromosome NC_035783.1 position 49364746 (TileDB column 253847288) has too many alleles in the combined VCF record : 53 : current limit : 50. Fields, such as PL, with length equal to the number of genotypes will NOT be added for this location. 13:26:30.599 WARN MinimalGenotypingEngine - Attempting to genotype more than 50 alleles. Site will be skipped at location NC_035783.1:49364746 13:26:30.948 INFO ProgressMeter - NC_035783.1:49371945 168.1 137948000 820752.8 13:26:41.012 INFO ProgressMeter - NC_035783.1:49590612 168.2 138075000 820689.4 13:26:51.041 INFO ProgressMeter - NC_035783.1:49905949 168.4 138215000 820706.2 13:27:01.045 INFO ProgressMeter - NC_035783.1:50121024 168.6 138334000 820600.3 13:27:11.088 INFO ProgressMeter - NC_035783.1:50319050 168.7 138465000 820562.7 13:27:21.126 INFO ProgressMeter - NC_035783.1:50545897 168.9 138593000 820507.7 13:27:31.164 INFO ProgressMeter - NC_035783.1:50774134 169.1 138728000 820494.3 13:27:41.231 INFO ProgressMeter - NC_035783.1:50972768 169.2 138850000 820401.7 13:27:51.239 INFO ProgressMeter - NC_035783.1:51173859 169.4 138973000 820320.0 13:28:01.284 INFO ProgressMeter - NC_035783.1:51396577 169.6 139108000 820306.3 13:28:11.354 INFO ProgressMeter - NC_035783.1:51612071 169.7 139234000 820237.5 13:28:21.414 INFO ProgressMeter - NC_035783.1:51822778 169.9 139363000 820187.3 13:28:31.423 INFO ProgressMeter - NC_035783.1:52031814 170.1 139487000 820111.9 13:28:41.436 INFO ProgressMeter - NC_035783.1:52250623 170.2 139623000 820106.9 13:28:51.481 INFO ProgressMeter - NC_035783.1:52466139 170.4 139760000 820105.1 13:29:01.752 INFO ProgressMeter - NC_035783.1:52685299 170.6 139903000 820120.4 13:29:11.826 INFO ProgressMeter - NC_035783.1:52919953 170.8 140042000 820128.0 13:29:21.855 INFO ProgressMeter - NC_035783.1:53138243 170.9 140172000 820086.6 13:29:31.893 INFO ProgressMeter - NC_035783.1:53402375 171.1 140320000 820149.7 13:29:41.950 INFO ProgressMeter - NC_035783.1:53693967 171.3 140464000 820187.8 13:29:52.001 INFO ProgressMeter - NC_035783.1:54050212 171.4 140602000 820191.4 13:30:02.025 INFO ProgressMeter - NC_035783.1:54372941 171.6 140742000 820208.7 13:30:12.058 INFO ProgressMeter - NC_035783.1:54685147 171.8 140883000 820231.1 13:30:22.063 INFO ProgressMeter - NC_035783.1:55044039 171.9 141034000 820313.8 13:30:32.083 INFO ProgressMeter - NC_035783.1:55301962 172.1 141174000 820331.3 13:30:42.136 INFO ProgressMeter - NC_035783.1:55510625 172.3 141310000 820322.9 13:30:52.247 INFO ProgressMeter - NC_035783.1:55775727 172.4 141452000 820344.7 13:31:02.288 INFO ProgressMeter - NC_035783.1:56120679 172.6 141594000 820372.0 13:31:12.355 INFO ProgressMeter - NC_035783.1:56437171 172.8 141746000 820455.1 13:31:22.417 INFO ProgressMeter - NC_035783.1:56655820 172.9 141871000 820382.3 13:31:32.426 INFO ProgressMeter - NC_035783.1:56858414 173.1 142011000 820400.5 13:31:42.467 INFO ProgressMeter - NC_035783.1:57067436 173.3 142145000 820381.5 13:31:52.480 INFO ProgressMeter - NC_035783.1:57285463 173.4 142285000 820399.3 13:32:02.499 INFO ProgressMeter - NC_035783.1:57471636 173.6 142408000 820318.7 13:32:12.511 INFO ProgressMeter - NC_035783.1:57782965 173.8 142552000 820359.7 13:32:22.513 INFO ProgressMeter - NC_035783.1:58020570 173.9 142693000 820384.1 13:32:32.538 INFO ProgressMeter - NC_035783.1:58326017 174.1 142837000 820423.9 13:32:42.606 INFO ProgressMeter - NC_035783.1:58657007 174.3 142992000 820523.3 13:32:52.663 INFO ProgressMeter - 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NC_035784.1:5851571 178.8 146637000 820173.2 13:37:23.821 INFO ProgressMeter - NC_035784.1:6182909 179.0 146791000 820262.2 13:37:33.839 INFO ProgressMeter - NC_035784.1:6517494 179.1 146945000 820357.4 13:37:43.905 INFO ProgressMeter - NC_035784.1:6863153 179.3 147096000 820432.0 13:37:53.929 INFO ProgressMeter - NC_035784.1:7242451 179.5 147247000 820509.6 13:38:03.962 INFO ProgressMeter - NC_035784.1:7452229 179.6 147380000 820486.2 13:38:14.010 INFO ProgressMeter - NC_035784.1:7640988 179.8 147512000 820456.2 13:38:24.092 INFO ProgressMeter - NC_035784.1:7862185 180.0 147657000 820495.8 13:38:34.149 INFO ProgressMeter - NC_035784.1:8045659 180.1 147795000 820498.4 13:38:44.213 INFO ProgressMeter - NC_035784.1:8246692 180.3 147935000 820511.6 13:38:54.238 INFO ProgressMeter - NC_035784.1:8415212 180.5 148067000 820483.4 13:39:04.535 INFO ProgressMeter - NC_035784.1:8601816 180.6 148210000 820495.5 13:39:14.594 INFO ProgressMeter - NC_035784.1:8797074 180.8 148356000 820542.2 13:39:24.646 INFO ProgressMeter - 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NC_035784.1:15270258 185.3 152076000 820623.4 13:43:55.544 INFO ProgressMeter - NC_035784.1:15488432 185.5 152220000 820659.8 13:44:05.560 INFO ProgressMeter - NC_035784.1:15725358 185.7 152367000 820713.7 13:44:15.572 INFO ProgressMeter - NC_035784.1:15956595 185.8 152500000 820692.4 13:44:25.599 INFO ProgressMeter - NC_035784.1:16181068 186.0 152650000 820761.5 13:44:35.659 INFO ProgressMeter - NC_035784.1:16394940 186.2 152803000 820844.2 13:44:45.770 INFO ProgressMeter - NC_035784.1:16594643 186.3 152949000 820885.3 13:44:55.827 INFO ProgressMeter - NC_035784.1:16785641 186.5 153087000 820887.5 13:45:05.887 INFO ProgressMeter - NC_035784.1:17000745 186.7 153234000 820937.7 13:45:15.956 INFO ProgressMeter - NC_035784.1:17182454 186.8 153370000 820928.2 13:45:25.993 INFO ProgressMeter - NC_035784.1:17396267 187.0 153513000 820958.6 13:45:36.069 INFO ProgressMeter - NC_035784.1:17653729 187.2 153664000 821028.7 13:45:46.074 INFO ProgressMeter - NC_035784.1:17874408 187.3 153815000 821104.0 13:45:56.099 INFO ProgressMeter - NC_035784.1:18098507 187.5 153964000 821167.0 13:46:06.150 INFO ProgressMeter - NC_035784.1:18319921 187.7 154102000 821169.3 13:46:16.229 INFO ProgressMeter - NC_035784.1:18638087 187.8 154256000 821254.8 13:46:26.269 INFO ProgressMeter - NC_035784.1:18900953 188.0 154411000 821348.3 13:46:36.303 INFO ProgressMeter - NC_035784.1:19123551 188.2 154550000 821357.0 13:46:46.340 INFO ProgressMeter - NC_035784.1:19386436 188.3 154696000 821402.7 13:46:56.369 INFO ProgressMeter - NC_035784.1:19637182 188.5 154841000 821443.5 13:47:06.378 INFO ProgressMeter - NC_035784.1:19886840 188.7 154978000 821443.4 13:47:16.431 INFO ProgressMeter - NC_035784.1:20202234 188.8 155128000 821508.9 13:47:26.467 INFO ProgressMeter - NC_035784.1:20501581 189.0 155264000 821501.4 13:47:36.480 INFO ProgressMeter - NC_035784.1:20835845 189.2 155417000 821585.5 13:47:46.549 INFO ProgressMeter - NC_035784.1:21046468 189.3 155546000 821538.6 13:47:56.595 INFO ProgressMeter - NC_035784.1:21263176 189.5 155681000 821525.1 13:48:06.661 INFO ProgressMeter - NC_035784.1:21460539 189.7 155811000 821483.9 13:48:16.685 INFO ProgressMeter - NC_035784.1:21643583 189.8 155947000 821477.3 13:48:26.732 INFO ProgressMeter - NC_035784.1:21852032 190.0 156084000 821474.4 13:48:36.733 INFO ProgressMeter - NC_035784.1:22055781 190.2 156231000 821527.4 13:48:46.788 INFO ProgressMeter - NC_035784.1:22271823 190.3 156376000 821565.9 13:48:56.801 INFO ProgressMeter - NC_035784.1:22626248 190.5 156511000 821554.8 13:49:06.810 INFO ProgressMeter - NC_035784.1:22979432 190.7 156651000 821570.3 13:49:16.844 INFO ProgressMeter - NC_035784.1:23221410 190.8 156803000 821646.8 13:49:26.847 INFO ProgressMeter - NC_035784.1:23451236 191.0 156936000 821626.0 13:49:36.863 INFO ProgressMeter - NC_035784.1:23754653 191.2 157075000 821635.6 13:49:46.872 INFO ProgressMeter - NC_035784.1:24061219 191.3 157210000 821624.8 13:49:56.894 INFO ProgressMeter - NC_035784.1:24284153 191.5 157349000 821634.0 13:50:06.895 INFO ProgressMeter - NC_035784.1:24715719 191.7 157477000 821587.3 13:50:16.945 INFO ProgressMeter - NC_035784.1:24932641 191.8 157617000 821599.8 13:50:27.012 INFO ProgressMeter - NC_035784.1:25130001 192.0 157760000 821626.6 13:50:37.076 INFO ProgressMeter - NC_035784.1:25337698 192.2 157896000 821617.1 13:50:47.128 INFO ProgressMeter - NC_035784.1:25551052 192.3 158039000 821645.0 13:50:57.178 INFO ProgressMeter - NC_035784.1:25787614 192.5 158182000 821673.0 13:51:07.224 INFO ProgressMeter - NC_035784.1:25999384 192.7 158319000 821669.9 13:51:17.279 INFO ProgressMeter - NC_035784.1:26240043 192.8 158462000 821697.4 13:51:27.366 INFO ProgressMeter - NC_035784.1:26453988 193.0 158595000 821670.8 13:51:37.379 INFO ProgressMeter - NC_035784.1:26676119 193.2 158735000 821685.6 13:51:47.495 INFO ProgressMeter - NC_035784.1:26896324 193.4 158876000 821698.4 13:51:57.575 INFO ProgressMeter - NC_035784.1:27160503 193.5 159027000 821765.3 13:52:07.579 INFO ProgressMeter - NC_035784.1:27368561 193.7 159155000 821718.8 13:52:17.635 INFO ProgressMeter - NC_035784.1:27630007 193.9 159306000 821787.3 13:52:27.659 INFO ProgressMeter - NC_035784.1:27821991 194.0 159441000 821775.5 13:52:37.687 INFO ProgressMeter - NC_035784.1:28028277 194.2 159579000 821778.8 13:52:47.699 INFO ProgressMeter - NC_035784.1:28236641 194.4 159715000 821773.0 13:52:57.754 INFO ProgressMeter - NC_035784.1:28576428 194.5 159859000 821805.3 13:53:07.763 INFO ProgressMeter - NC_035784.1:28784287 194.7 159993000 821789.5 13:53:17.857 INFO ProgressMeter - NC_035784.1:28999207 194.9 160126000 821762.5 13:53:27.876 INFO ProgressMeter - NC_035784.1:29173002 195.0 160244000 821664.0 13:53:37.949 INFO ProgressMeter - NC_035784.1:29378803 195.2 160379000 821648.9 13:53:47.966 INFO ProgressMeter - NC_035784.1:29599200 195.4 160518000 821658.2 13:53:58.016 INFO ProgressMeter - NC_035784.1:29799653 195.5 160658000 821670.4 13:54:08.041 INFO ProgressMeter - NC_035784.1:30049559 195.7 160797000 821679.1 13:54:18.105 INFO ProgressMeter - NC_035784.1:30325682 195.9 160951000 821761.7 13:54:28.157 INFO ProgressMeter - NC_035784.1:30620872 196.0 161087000 821753.2 13:54:38.191 INFO ProgressMeter - NC_035784.1:30897367 196.2 161234000 821802.0 13:54:48.211 INFO ProgressMeter - NC_035784.1:31195824 196.4 161375000 821821.1 13:54:58.255 INFO ProgressMeter - NC_035784.1:31505873 196.5 161511000 821813.1 13:55:08.322 INFO ProgressMeter - NC_035784.1:31802151 196.7 161649000 821813.7 13:55:18.400 INFO ProgressMeter - NC_035784.1:32134855 196.9 161787000 821813.5 13:55:28.403 INFO ProgressMeter - NC_035784.1:32450941 197.0 161929000 821838.8 13:55:38.954 INFO ProgressMeter - NC_035784.1:32692985 197.2 162067000 821805.8 13:55:48.965 INFO ProgressMeter - NC_035784.1:32933658 197.4 162216000 821866.0 13:55:59.021 INFO ProgressMeter - NC_035784.1:33237903 197.5 162357000 821882.4 13:56:09.086 INFO ProgressMeter - NC_035784.1:33521762 197.7 162493000 821873.0 13:56:19.099 INFO ProgressMeter - NC_035784.1:33832654 197.9 162638000 821912.6 13:56:29.128 INFO ProgressMeter - NC_035784.1:34056075 198.0 162758000 821824.8 13:56:39.141 INFO ProgressMeter - NC_035784.1:34416635 198.2 162903000 821864.5 13:56:49.184 INFO ProgressMeter - NC_035784.1:34722782 198.4 163043000 821876.7 13:56:59.246 INFO ProgressMeter - NC_035784.1:34968982 198.5 163177000 821857.4 13:57:09.283 INFO ProgressMeter - NC_035784.1:35167891 198.7 163298000 821774.5 13:57:19.283 INFO ProgressMeter - NC_035784.1:35356476 198.9 163425000 821724.4 13:57:29.345 INFO ProgressMeter - NC_035784.1:35582491 199.0 163554000 821680.2 13:57:39.363 INFO ProgressMeter - NC_035784.1:35788633 199.2 163679000 821619.0 13:57:49.411 INFO ProgressMeter - NC_035784.1:35972673 199.4 163797000 821520.7 13:57:59.451 INFO ProgressMeter - NC_035784.1:36119685 199.6 163901000 821353.0 13:58:09.578 INFO ProgressMeter - NC_035784.1:36290689 199.7 164021000 821259.7 13:58:19.593 INFO ProgressMeter - NC_035784.1:36443656 199.9 164127000 821104.2 13:58:29.610 INFO ProgressMeter - NC_035784.1:36661829 200.1 164262000 821093.8 13:58:39.648 INFO ProgressMeter - NC_035784.1:36858901 200.2 164386000 821027.0 13:58:49.696 INFO ProgressMeter - NC_035784.1:37039532 200.4 164519000 821004.6 13:58:59.778 INFO ProgressMeter - NC_035784.1:37222236 200.6 164647000 820954.9 13:59:10.072 INFO ProgressMeter - NC_035784.1:37408934 200.7 164775000 820890.9 13:59:20.097 INFO ProgressMeter - NC_035784.1:37600382 200.9 164907000 820865.3 13:59:30.151 INFO ProgressMeter - NC_035784.1:37772418 201.1 165029000 820787.9 13:59:40.186 INFO ProgressMeter - NC_035784.1:37980498 201.2 165155000 820731.9 13:59:50.213 INFO ProgressMeter - NC_035784.1:38150491 201.4 165271000 820626.8 14:00:00.231 INFO ProgressMeter - NC_035784.1:38349963 201.6 165402000 820597.0 14:00:10.235 INFO ProgressMeter - NC_035784.1:38660097 201.7 165542000 820612.7 14:00:20.285 INFO ProgressMeter - NC_035784.1:38946030 201.9 165670000 820565.9 14:00:30.288 INFO ProgressMeter - NC_035784.1:39314453 202.1 165806000 820561.9 14:00:40.309 INFO ProgressMeter - NC_035784.1:39536034 202.2 165926000 820477.6 14:00:50.375 INFO ProgressMeter - NC_035784.1:39728645 202.4 166052000 820420.1 14:01:00.468 INFO ProgressMeter - NC_035784.1:39904197 202.6 166173000 820336.1 14:01:10.539 INFO ProgressMeter - NC_035784.1:40130466 202.7 166311000 820337.6 14:01:20.562 INFO ProgressMeter - NC_035784.1:40330563 202.9 166432000 820258.6 14:01:30.600 INFO ProgressMeter - NC_035784.1:40566652 203.1 166585000 820336.3 14:01:40.632 INFO ProgressMeter - NC_035784.1:40757148 203.2 166719000 820320.7 14:01:50.704 INFO ProgressMeter - NC_035784.1:41009589 203.4 166847000 820273.0 14:02:00.704 INFO ProgressMeter - NC_035784.1:41205309 203.6 166976000 820235.1 14:02:10.764 INFO ProgressMeter - NC_035784.1:41432713 203.7 167113000 820232.5 14:02:20.809 INFO ProgressMeter - NC_035784.1:41645646 203.9 167238000 820172.1 14:02:30.817 INFO ProgressMeter - NC_035784.1:41891444 204.1 167381000 820202.5 14:02:40.918 INFO ProgressMeter - NC_035784.1:42097287 204.2 167509000 820153.1 14:02:50.942 INFO ProgressMeter - NC_035784.1:42414831 204.4 167650000 820172.6 14:03:01.009 INFO ProgressMeter - NC_035784.1:42713510 204.6 167792000 820194.0 14:03:11.012 INFO ProgressMeter - NC_035784.1:42980211 204.7 167927000 820185.5 14:03:21.047 INFO ProgressMeter - 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NC_035788.1:79589716 376.8 307508000 816035.7 16:55:26.384 INFO ProgressMeter - NC_035788.1:79863617 377.0 307642000 816028.9 16:55:36.416 INFO ProgressMeter - NC_035788.1:80126825 377.2 307789000 816056.9 16:55:46.435 INFO ProgressMeter - NC_035788.1:80392509 377.3 307937000 816088.0 16:55:56.507 INFO ProgressMeter - NC_035788.1:80604266 377.5 308070000 816077.4 16:56:06.537 INFO ProgressMeter - NC_035788.1:80827947 377.7 308201000 816063.1 16:56:16.565 INFO ProgressMeter - NC_035788.1:81184137 377.8 308357000 816115.0 16:56:26.614 INFO ProgressMeter - NC_035788.1:81494181 378.0 308506000 816147.5 16:56:36.659 INFO ProgressMeter - NC_035788.1:81962121 378.2 308647000 816159.1 16:56:46.665 INFO ProgressMeter - NC_035788.1:82282781 378.3 308785000 816164.1 16:56:56.741 INFO ProgressMeter - NC_035788.1:82635505 378.5 308924000 816169.2 16:57:06.795 INFO ProgressMeter - NC_035788.1:83045442 378.7 309072000 816198.9 16:57:16.798 INFO ProgressMeter - NC_035788.1:83381564 378.8 309217000 816222.4 16:57:26.878 INFO ProgressMeter - NC_035788.1:83785643 379.0 309349000 816208.9 16:57:36.929 INFO ProgressMeter - NC_035788.1:84155477 379.2 309494000 816230.7 16:57:46.982 INFO ProgressMeter - NC_035788.1:84593301 379.3 309631000 816231.4 16:57:57.026 INFO ProgressMeter - NC_035788.1:85039192 379.5 309788000 816285.0 16:58:07.084 INFO ProgressMeter - NC_035788.1:85392251 379.7 309940000 816325.0 16:58:17.107 INFO ProgressMeter - NC_035788.1:85731738 379.8 310083000 816342.4 16:58:27.119 INFO ProgressMeter - NC_035788.1:86181263 380.0 310230000 816370.8 16:58:37.151 INFO ProgressMeter - NC_035788.1:86551357 380.2 310374000 816390.5 16:58:47.214 INFO ProgressMeter - NC_035788.1:86871894 380.3 310514000 816398.6 16:58:57.236 INFO ProgressMeter - NC_035788.1:87250173 380.5 310653000 816405.5 16:59:07.277 INFO ProgressMeter - NC_035788.1:87583655 380.7 310800000 816432.8 16:59:17.332 INFO ProgressMeter - NC_035788.1:87981992 380.8 310945000 816454.3 16:59:27.336 INFO ProgressMeter - NC_035788.1:88342045 381.0 311096000 816493.3 16:59:37.344 INFO ProgressMeter - NC_035788.1:88730695 381.2 311232000 816492.8 16:59:47.392 INFO ProgressMeter - NC_035788.1:89159285 381.3 311372000 816501.3 16:59:57.422 INFO ProgressMeter - NC_035788.1:89540416 381.5 311516000 816521.0 17:00:07.453 INFO ProgressMeter - NC_035788.1:89932143 381.7 311661000 816543.3 17:00:17.485 INFO ProgressMeter - NC_035788.1:90392984 381.9 311802000 816555.0 17:00:27.495 INFO ProgressMeter - NC_035788.1:90645641 382.0 311933000 816541.3 17:00:37.550 INFO ProgressMeter - NC_035788.1:90965207 382.2 312084000 816578.4 17:00:47.874 INFO ProgressMeter - NC_035788.1:91249218 382.4 312229000 816590.1 17:00:57.905 INFO ProgressMeter - NC_035788.1:91622761 382.5 312381000 816630.6 17:01:07.994 INFO ProgressMeter - NC_035788.1:91841807 382.7 312526000 816650.7 17:01:18.017 INFO ProgressMeter - NC_035788.1:92086338 382.9 312671000 816673.1 17:01:28.057 INFO ProgressMeter - NC_035788.1:92415670 383.0 312811000 816681.8 17:01:38.112 INFO ProgressMeter - NC_035788.1:92808707 383.2 312938000 816656.1 17:01:48.166 INFO ProgressMeter - NC_035788.1:93204041 383.4 313071000 816646.0 17:01:58.172 INFO ProgressMeter - NC_035788.1:93477696 383.5 313203000 816635.1 17:02:08.213 INFO ProgressMeter - NC_035788.1:93711449 383.7 313334000 816620.3 17:02:18.234 INFO ProgressMeter - NC_035788.1:93967233 383.9 313474000 816629.7 17:02:28.284 INFO ProgressMeter - NC_035788.1:94306404 384.0 313601000 816604.3 17:02:38.299 INFO ProgressMeter - NC_035788.1:94698712 384.2 313733000 816593.1 17:02:48.329 INFO ProgressMeter - NC_035788.1:95190478 384.4 313875000 816607.4 17:02:58.367 INFO ProgressMeter - NC_035788.1:95550857 384.5 313997000 816569.3 17:03:08.431 INFO ProgressMeter - NC_035788.1:96102888 384.7 314129000 816556.4 17:03:18.504 INFO ProgressMeter - NC_035788.1:96595594 384.9 314260000 816540.6 17:03:28.552 INFO ProgressMeter - NC_035788.1:97165309 385.0 314388000 816517.9 17:03:38.553 INFO ProgressMeter - NC_035788.1:97538172 385.2 314533000 816541.0 17:03:48.619 INFO ProgressMeter - NC_035788.1:98183971 385.4 314664000 816525.5 17:03:58.659 INFO ProgressMeter - NC_035788.1:98605194 385.5 314787000 816490.1 17:04:08.685 INFO ProgressMeter - NC_035788.1:99108744 385.7 314917000 816473.4 17:04:18.736 INFO ProgressMeter - NC_035788.1:99473180 385.9 315045000 816450.7 17:04:28.755 INFO ProgressMeter - NC_035788.1:99726150 386.0 315180000 816447.2 17:04:38.795 INFO ProgressMeter - NC_035788.1:100032872 386.2 315307000 816422.3 17:04:48.825 INFO ProgressMeter - NC_035788.1:100365877 386.4 315434000 816397.8 17:04:59.159 INFO ProgressMeter - NC_035788.1:100890375 386.5 315567000 816378.1 17:05:09.249 INFO ProgressMeter - NC_035788.1:101130567 386.7 315689000 816338.6 17:05:19.272 INFO ProgressMeter - NC_035788.1:101345539 386.9 315826000 816340.2 17:05:29.315 INFO ProgressMeter - NC_035788.1:101592712 387.0 315955000 816320.5 17:05:39.397 INFO ProgressMeter - NC_035788.1:101846051 387.2 316071000 816265.8 17:05:49.408 INFO ProgressMeter - NC_035788.1:102216270 387.4 316194000 816231.7 17:05:59.423 INFO ProgressMeter - NC_035788.1:102675799 387.5 316327000 816223.4 17:06:09.431 INFO ProgressMeter - NC_035788.1:103061417 387.7 316461000 816217.8 17:06:19.439 INFO ProgressMeter - NC_035788.1:103681208 387.9 316600000 816225.2 17:06:31.171 INFO ProgressMeter - NC_035789.1:835 388.1 316726000 816138.6 17:06:41.209 INFO ProgressMeter - NC_035789.1:357046 388.2 316873000 816165.6 17:06:51.271 INFO ProgressMeter - NC_035789.1:687643 388.4 316999000 816137.6 17:07:01.295 INFO ProgressMeter - NC_035789.1:933324 388.6 317120000 816098.1 17:07:11.362 INFO ProgressMeter - NC_035789.1:1188798 388.7 317245000 816067.4 17:07:21.383 INFO ProgressMeter - NC_035789.1:1500375 388.9 317378000 816058.9 17:07:31.450 INFO ProgressMeter - NC_035789.1:1765887 389.1 317500000 816020.6 17:07:41.493 INFO ProgressMeter - NC_035789.1:2026690 389.3 317620000 815977.9 17:07:51.519 INFO ProgressMeter - NC_035789.1:2322997 389.4 317757000 815979.6 17:08:01.560 INFO ProgressMeter - NC_035789.1:2593764 389.6 317887000 815962.8 17:08:11.638 INFO ProgressMeter - NC_035789.1:2886685 389.8 318019000 815949.8 17:08:21.643 INFO ProgressMeter - NC_035789.1:3131919 389.9 318145000 815924.0 17:08:31.663 INFO ProgressMeter - NC_035789.1:3346917 390.1 318276000 815910.5 17:08:41.695 INFO ProgressMeter - NC_035789.1:3615564 390.3 318417000 815922.3 17:08:51.719 INFO ProgressMeter - NC_035789.1:3886496 390.4 318556000 815929.2 17:09:01.782 INFO ProgressMeter - NC_035789.1:4239143 390.6 318688000 815916.8 17:09:11.881 INFO ProgressMeter - NC_035789.1:4489881 390.8 318816000 815892.9 17:09:21.924 INFO ProgressMeter - NC_035789.1:4810343 390.9 318967000 815929.8 17:09:31.927 INFO ProgressMeter - NC_035789.1:5037884 391.1 319103000 815929.7 17:09:41.953 INFO ProgressMeter - NC_035789.1:5275211 391.3 319261000 815985.1 17:09:51.963 INFO ProgressMeter - NC_035789.1:5541334 391.4 319402000 815997.5 17:10:01.986 INFO ProgressMeter - NC_035789.1:5729098 391.6 319527000 815968.6 17:10:11.987 INFO ProgressMeter - NC_035789.1:6139191 391.8 319669000 815983.9 17:10:22.016 INFO ProgressMeter - NC_035789.1:6488868 391.9 319805000 815982.9 17:10:32.022 INFO ProgressMeter - NC_035789.1:6871717 392.1 319948000 816000.6 17:10:42.036 INFO ProgressMeter - NC_035789.1:7209614 392.3 320085000 816002.6 17:10:52.062 INFO ProgressMeter - NC_035789.1:7597413 392.4 320216000 815989.0 17:11:02.089 INFO ProgressMeter - NC_035789.1:7892946 392.6 320351000 815985.5 17:11:12.097 INFO ProgressMeter - NC_035789.1:8173943 392.8 320482000 815972.5 17:11:22.112 INFO ProgressMeter - NC_035789.1:8502926 392.9 320618000 815972.0 17:11:32.460 INFO ProgressMeter - NC_035789.1:8773101 393.1 320744000 815934.5 17:11:42.514 INFO ProgressMeter - NC_035789.1:9059438 393.3 320878000 815927.6 17:11:52.559 INFO ProgressMeter - NC_035789.1:9372123 393.4 321007000 815908.3 17:12:02.613 INFO ProgressMeter - NC_035789.1:9642968 393.6 321148000 815919.2 17:12:12.638 INFO ProgressMeter - NC_035789.1:10092855 393.8 321316000 815999.6 17:12:22.709 INFO ProgressMeter - NC_035789.1:10429762 393.9 321459000 816014.9 17:12:32.751 INFO ProgressMeter - NC_035789.1:10725337 394.1 321593000 816008.4 17:12:42.783 INFO ProgressMeter - NC_035789.1:11189263 394.3 321731000 816012.4 17:12:52.842 INFO ProgressMeter - NC_035789.1:11461245 394.4 321867000 816010.3 17:13:02.920 INFO ProgressMeter - NC_035789.1:11758018 394.6 322005000 816012.7 17:13:12.953 INFO ProgressMeter - NC_035789.1:11935215 394.8 322129000 815981.2 17:13:22.961 INFO ProgressMeter - NC_035789.1:12197987 394.9 322266000 815983.4 17:13:33.016 INFO ProgressMeter - NC_035789.1:12518996 395.1 322413000 816009.4 17:13:43.026 INFO ProgressMeter - NC_035789.1:12838550 395.3 322566000 816052.0 17:13:53.036 INFO ProgressMeter - NC_035789.1:13163296 395.4 322700000 816046.6 17:14:03.045 INFO ProgressMeter - NC_035789.1:13404551 395.6 322834000 816041.2 17:14:13.071 INFO ProgressMeter - NC_035789.1:13661483 395.8 322977000 816058.0 17:14:23.125 INFO ProgressMeter - NC_035789.1:13882317 395.9 323113000 816056.1 17:14:33.147 INFO ProgressMeter - NC_035789.1:14145982 396.1 323256000 816073.0 17:14:43.195 INFO ProgressMeter - NC_035789.1:14397141 396.3 323381000 816043.6 17:14:53.222 INFO ProgressMeter - NC_035789.1:14697767 396.4 323521000 816052.7 17:15:03.271 INFO ProgressMeter - NC_035789.1:14956328 396.6 323659000 816056.1 17:15:13.331 INFO ProgressMeter - NC_035789.1:15182415 396.8 323790000 816041.4 17:15:23.420 INFO ProgressMeter - NC_035789.1:15412274 396.9 323929000 816045.9 17:15:33.458 INFO ProgressMeter - NC_035789.1:15681879 397.1 324060000 816032.0 17:15:43.487 INFO ProgressMeter - NC_035789.1:15927326 397.3 324205000 816053.6 17:15:53.503 INFO ProgressMeter - NC_035789.1:16219039 397.5 324345000 816063.1 17:16:03.552 INFO ProgressMeter - NC_035789.1:16519652 397.6 324481000 816061.4 17:16:14.137 INFO ProgressMeter - NC_035789.1:16795415 397.8 324619000 816046.4 17:16:24.184 INFO ProgressMeter - NC_035789.1:17101964 398.0 324756000 816047.3 17:16:34.186 INFO ProgressMeter - NC_035789.1:17401749 398.1 324892000 816047.2 17:16:44.196 INFO ProgressMeter - NC_035789.1:17680949 398.3 325025000 816039.3 17:16:54.209 INFO ProgressMeter - NC_035789.1:17946537 398.5 325167000 816053.9 17:17:04.242 INFO ProgressMeter - NC_035789.1:18256993 398.6 325301000 816047.7 17:17:14.308 INFO ProgressMeter - NC_035789.1:18531118 398.8 325448000 816073.1 17:17:24.340 INFO ProgressMeter - NC_035789.1:18854788 399.0 325595000 816099.5 17:17:34.408 INFO ProgressMeter - NC_035789.1:19097199 399.1 325727000 816087.1 17:17:44.461 INFO ProgressMeter - NC_035789.1:19298032 399.3 325861000 816080.3 17:17:54.494 INFO ProgressMeter - NC_035789.1:19556518 399.5 325991000 816064.1 17:18:04.510 INFO ProgressMeter - NC_035789.1:19784310 399.6 326128000 816066.0 17:18:14.562 INFO ProgressMeter - NC_035789.1:20000348 399.8 326260000 816054.2 17:18:24.633 INFO ProgressMeter - NC_035789.1:20289308 400.0 326400000 816061.8 17:18:34.667 INFO ProgressMeter - NC_035789.1:20529477 400.1 326526000 816035.6 17:18:44.706 INFO ProgressMeter - NC_035789.1:20812283 400.3 326666000 816044.3 17:18:54.720 INFO ProgressMeter - NC_035789.1:21079868 400.5 326804000 816048.8 17:19:04.795 INFO ProgressMeter - NC_035789.1:21427405 400.6 326940000 816046.2 17:19:14.839 INFO ProgressMeter - NC_035789.1:21652411 400.8 327074000 816039.7 17:19:24.871 INFO ProgressMeter - NC_035789.1:21885749 401.0 327205000 816026.1 17:19:34.916 INFO ProgressMeter - NC_035789.1:22146599 401.1 327349000 816044.5 17:19:44.946 INFO ProgressMeter - NC_035789.1:22359487 401.3 327490000 816056.0 17:19:54.987 INFO ProgressMeter - NC_035789.1:22721628 401.5 327634000 816074.5 17:20:05.035 INFO ProgressMeter - NC_035789.1:23013339 401.6 327760000 816047.9 17:20:15.036 INFO ProgressMeter - NC_035789.1:23275779 401.8 327867000 815975.7 17:20:25.073 INFO ProgressMeter - NC_035789.1:23720802 402.0 327999000 815964.5 17:20:35.081 INFO ProgressMeter - NC_035789.1:24323535 402.1 328132000 815956.8 17:20:45.151 INFO ProgressMeter - NC_035789.1:24804999 402.3 328258000 815929.6 17:20:55.168 INFO ProgressMeter - NC_035789.1:25120830 402.5 328413000 815976.2 17:21:05.214 INFO ProgressMeter - NC_035789.1:25420048 402.6 328563000 816009.5 17:21:15.273 INFO ProgressMeter - NC_035789.1:25800282 402.8 328703000 816017.4 17:21:25.339 INFO ProgressMeter - NC_035789.1:26236047 403.0 328841000 816020.1 17:21:35.385 INFO ProgressMeter - NC_035789.1:26629719 403.1 328978000 816021.0 17:21:45.421 INFO ProgressMeter - NC_035789.1:26963900 403.3 329120000 816034.7 17:21:55.446 INFO ProgressMeter - NC_035789.1:27213082 403.5 329260000 816043.8 17:22:05.477 INFO ProgressMeter - NC_035789.1:27445962 403.7 329391000 816030.3 17:22:15.543 INFO ProgressMeter - NC_035789.1:27745154 403.8 329543000 816067.7 17:22:25.569 INFO ProgressMeter - NC_035789.1:28153852 404.0 329679000 816066.8 17:22:35.580 INFO ProgressMeter - NC_035789.1:28577887 404.2 329814000 816063.9 17:22:45.583 INFO ProgressMeter - NC_035789.1:29053809 404.3 329944000 816048.9 17:22:55.639 INFO ProgressMeter - NC_035789.1:29547288 404.5 330071000 816024.8 17:23:05.689 INFO ProgressMeter - NC_035789.1:29798212 404.7 330197000 815998.4 17:23:15.763 INFO ProgressMeter - NC_035789.1:30026282 404.8 330336000 816003.3 17:23:25.841 INFO ProgressMeter - NC_035789.1:30310110 405.0 330469000 815993.3 17:23:35.844 INFO ProgressMeter - NC_035789.1:30752587 405.2 330610000 816005.5 17:23:45.863 INFO ProgressMeter - NC_035789.1:31070272 405.3 330757000 816032.0 17:23:55.911 INFO ProgressMeter - NC_035789.1:31293965 405.5 330882000 816003.3 17:24:05.911 INFO ProgressMeter - NC_035789.1:31495367 405.7 331009000 815981.1 17:24:15.928 INFO ProgressMeter - NC_035789.1:31818962 405.8 331139000 815965.7 17:24:25.957 INFO ProgressMeter - NC_035789.1:32233626 406.0 331273000 815959.9 17:24:35.989 INFO ProgressMeter - NC_035789.1:32611493 406.2 331420000 815985.9 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),6541.22558919414,Cpu time(s),6438.508279326165 17:24:36.773 INFO ProgressMeter - NC_035789.1:32649011 406.2 331430445 815985.4 17:24:36.773 INFO ProgressMeter - Traversal complete. Processed 331430445 total variants in 406.2 minutes. 17:24:36.806 INFO GenotypeGVCFs - Shutting down engine [June 3, 2022 at 5:24:36 PM PDT] org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs done. Elapsed time: 406.19 minutes. Runtime.totalMemory()=2797600768 Using GATK jar /home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -jar /home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar GenotypeGVCFs -R /home/shared/8TB_HDD_01/sr320/github/ceabigr/data/Cvirginica_v300.fa -V gendb://GenomicsDB -O Cv-rnaseq_genotypes.vcf.gz 07:49:16.631 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar!/com/intel/gkl/native/libgkl_compression.so Jun 08, 2022 7:49:16 AM shaded.cloud_nio.com.google.auth.oauth2.ComputeEngineCredentials runningOnComputeEngine INFO: Failed to detect whether we are running on Google Compute Engine. 07:49:16.722 INFO GenotypeGVCFs - ------------------------------------------------------------ 07:49:16.722 INFO GenotypeGVCFs - The Genome Analysis Toolkit (GATK) v4.2.5.0 07:49:16.722 INFO GenotypeGVCFs - For support and documentation go to https://software.broadinstitute.org/gatk/ 07:49:16.722 INFO GenotypeGVCFs - Executing as sr320@raven on Linux v5.4.0-113-generic amd64 07:49:16.722 INFO GenotypeGVCFs - Java runtime: OpenJDK 64-Bit Server VM v11.0.15+10-Ubuntu-0ubuntu0.18.04.1 07:49:16.722 INFO GenotypeGVCFs - Start Date/Time: June 8, 2022 at 7:49:16 AM PDT 07:49:16.722 INFO GenotypeGVCFs - ------------------------------------------------------------ 07:49:16.722 INFO GenotypeGVCFs - ------------------------------------------------------------ 07:49:16.723 INFO GenotypeGVCFs - HTSJDK Version: 2.24.1 07:49:16.723 INFO GenotypeGVCFs - Picard Version: 2.25.4 07:49:16.723 INFO GenotypeGVCFs - Built for Spark Version: 2.4.5 07:49:16.723 INFO GenotypeGVCFs - HTSJDK Defaults.COMPRESSION_LEVEL : 2 07:49:16.723 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 07:49:16.723 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 07:49:16.723 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 07:49:16.723 INFO GenotypeGVCFs - Deflater: IntelDeflater 07:49:16.723 INFO GenotypeGVCFs - Inflater: IntelInflater 07:49:16.723 INFO GenotypeGVCFs - GCS max retries/reopens: 20 07:49:16.723 INFO GenotypeGVCFs - Requester pays: disabled 07:49:16.723 INFO GenotypeGVCFs - Initializing engine 07:49:16.724 INFO GenotypeGVCFs - Shutting down engine [June 8, 2022 at 7:49:16 AM PDT] org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=2155872256 *********************************************************************** A USER ERROR has occurred: The specified fasta file (file:///home/shared/8TB_HDD_01/sr320/github/ceabigr/data/Cvirginica_v300.fa) does not exist. *********************************************************************** Set the system property GATK_STACKTRACE_ON_USER_EXCEPTION (--java-options '-DGATK_STACKTRACE_ON_USER_EXCEPTION=true') to print the stack trace. /tmp/RtmpTUYbrf/chunk-code-5ba24525df32.txt: line 6: $/home/shared/gatk-4.2.5.0/gatk: No such file or directory Using GATK jar /home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -jar /home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar GenotypeGVCFs -R /home/shared/8TB_HDD_01/sr320/github/ceabigr/data/Cvirginica_v300.fa -V gendb://GenomicsDB -O Cv-rnaseq_genotypes.vcf.gz 06:52:32.369 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/shared/gatk-4.2.5.0/gatk-package-4.2.5.0-local.jar!/com/intel/gkl/native/libgkl_compression.so Jun 13, 2022 6:52:32 AM shaded.cloud_nio.com.google.auth.oauth2.ComputeEngineCredentials runningOnComputeEngine INFO: Failed to detect whether we are running on Google Compute Engine. 06:52:32.463 INFO GenotypeGVCFs - ------------------------------------------------------------ 06:52:32.464 INFO GenotypeGVCFs - The Genome Analysis Toolkit (GATK) v4.2.5.0 06:52:32.464 INFO GenotypeGVCFs - For support and documentation go to https://software.broadinstitute.org/gatk/ 06:52:32.464 INFO GenotypeGVCFs - Executing as sr320@raven on Linux v5.4.0-113-generic amd64 06:52:32.464 INFO GenotypeGVCFs - Java runtime: OpenJDK 64-Bit Server VM v11.0.15+10-Ubuntu-0ubuntu0.18.04.1 06:52:32.464 INFO GenotypeGVCFs - Start Date/Time: June 13, 2022 at 6:52:32 AM PDT 06:52:32.464 INFO GenotypeGVCFs - ------------------------------------------------------------ 06:52:32.464 INFO GenotypeGVCFs - ------------------------------------------------------------ 06:52:32.465 INFO GenotypeGVCFs - HTSJDK Version: 2.24.1 06:52:32.465 INFO GenotypeGVCFs - Picard Version: 2.25.4 06:52:32.465 INFO GenotypeGVCFs - Built for Spark Version: 2.4.5 06:52:32.465 INFO GenotypeGVCFs - HTSJDK Defaults.COMPRESSION_LEVEL : 2 06:52:32.465 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 06:52:32.465 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 06:52:32.465 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 06:52:32.465 INFO GenotypeGVCFs - Deflater: IntelDeflater 06:52:32.465 INFO GenotypeGVCFs - Inflater: IntelInflater 06:52:32.465 INFO GenotypeGVCFs - GCS max retries/reopens: 20 06:52:32.465 INFO GenotypeGVCFs - Requester pays: disabled 06:52:32.465 INFO GenotypeGVCFs - Initializing engine 06:52:32.866 INFO GenomicsDBLibLoader - GenomicsDB native library version : 1.4.3-6069e4a 06:52:33.307 info NativeGenomicsDB - pid=1838 tid=1839 No valid combination operation found for INFO field InbreedingCoeff - the field will NOT be part of INFO fields in the generated VCF records 06:52:33.307 info NativeGenomicsDB - pid=1838 tid=1839 No valid combination operation found for INFO field MLEAC - the field will NOT be part of INFO fields in the generated VCF records 06:52:33.307 info NativeGenomicsDB - pid=1838 tid=1839 No valid combination operation found for INFO field MLEAF - the field will NOT be part of INFO fields in the generated VCF records 06:52:33.602 INFO GenotypeGVCFs - Done initializing engine 06:52:33.629 INFO ProgressMeter - Starting traversal 06:52:33.629 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute 06:52:43.667 INFO ProgressMeter - NC_035780.1:144650 0.2 94000 561864.9 06:52:53.728 INFO ProgressMeter - NC_035780.1:348648 0.3 236000 704512.7 06:53:03.802 INFO ProgressMeter - NC_035780.1:558240 0.5 367000 729791.5 06:53:13.855 INFO ProgressMeter - NC_035780.1:757334 0.7 503000 750261.0 06:53:23.905 INFO ProgressMeter - NC_035780.1:944470 0.8 625000 745882.7 06:53:33.919 INFO ProgressMeter - NC_035780.1:1235305 1.0 767000 763310.7 06:53:43.990 INFO ProgressMeter - NC_035780.1:1502170 1.2 912000 777703.6 06:53:54.011 INFO ProgressMeter - NC_035780.1:1753601 1.3 1063000 793461.2 06:54:04.057 INFO ProgressMeter - NC_035780.1:1979638 1.5 1192000 790905.5 06:54:14.128 INFO ProgressMeter - NC_035780.1:2289437 1.7 1328000 792843.7 06:54:24.221 INFO ProgressMeter - NC_035780.1:2491886 1.8 1459000 791558.2 06:54:34.256 INFO ProgressMeter - NC_035780.1:2688209 2.0 1590000 790867.7 06:54:44.327 INFO ProgressMeter - NC_035780.1:2881416 2.2 1724000 791442.9 06:54:54.351 INFO ProgressMeter - NC_035780.1:3096073 2.3 1863000 794332.1 06:55:04.407 INFO ProgressMeter - NC_035780.1:3299738 2.5 2002000 796667.9 06:55:14.434 INFO ProgressMeter - NC_035780.1:3558046 2.7 2145000 800348.2 06:55:24.490 INFO ProgressMeter - NC_035780.1:3871771 2.8 2292000 804869.5 06:55:34.491 INFO ProgressMeter - NC_035780.1:4147919 3.0 2432000 806803.0 06:55:44.540 INFO ProgressMeter - NC_035780.1:4460008 3.2 2581000 811163.3 06:55:54.589 INFO ProgressMeter - NC_035780.1:4782147 3.3 2726000 813893.3 06:56:04.648 INFO ProgressMeter - NC_035780.1:5082737 3.5 2859000 812916.4 06:56:14.707 INFO ProgressMeter - NC_035780.1:5344109 3.7 2985000 810121.3 06:56:24.723 INFO ProgressMeter - NC_035780.1:5687077 3.9 3126000 811617.8 06:56:34.747 INFO ProgressMeter - NC_035780.1:5980694 4.0 3276000 815202.5 06:56:44.818 INFO ProgressMeter - NC_035780.1:6240771 4.2 3425000 818109.1 06:56:55.574 INFO ProgressMeter - NC_035780.1:6464249 4.4 3567000 817041.7 06:57:05.608 INFO ProgressMeter - NC_035780.1:6720852 4.5 3714000 819328.0 06:57:15.648 INFO ProgressMeter - NC_035780.1:7021867 4.7 3869000 823136.0 06:57:25.648 INFO ProgressMeter - NC_035780.1:7250721 4.9 4020000 825973.7 06:57:35.705 INFO ProgressMeter - NC_035780.1:7513397 5.0 4171000 828467.0 06:57:45.773 INFO ProgressMeter - NC_035780.1:7721410 5.2 4304000 827310.5 06:57:55.777 INFO ProgressMeter - NC_035780.1:8002374 5.4 4455000 829742.9 06:58:05.831 INFO ProgressMeter - NC_035780.1:8206958 5.5 4589000 828833.1 06:58:15.876 INFO ProgressMeter - NC_035780.1:8422803 5.7 4735000 830102.2 06:58:25.932 INFO ProgressMeter - NC_035780.1:8660859 5.9 4875000 830251.2 06:58:35.969 INFO ProgressMeter - NC_035780.1:8849596 6.0 5011000 829773.1 06:58:46.004 INFO ProgressMeter - NC_035780.1:9062885 6.2 5148000 829486.4 06:58:56.075 INFO ProgressMeter - NC_035780.1:9327835 6.4 5284000 828979.8 06:59:06.130 INFO ProgressMeter - NC_035780.1:9645818 6.5 5444000 832201.7 06:59:16.149 INFO ProgressMeter - NC_035780.1:9970119 6.7 5595000 833997.9 06:59:26.229 INFO ProgressMeter - NC_035780.1:10288380 6.9 5737000 834270.5 06:59:36.239 INFO ProgressMeter - NC_035780.1:10672382 7.0 5887000 835806.1 06:59:46.292 INFO ProgressMeter - NC_035780.1:10960748 7.2 6023000 835245.9 06:59:56.304 INFO ProgressMeter - NC_035780.1:11166492 7.4 6172000 836550.5 07:00:06.372 INFO ProgressMeter - NC_035780.1:11417194 7.5 6314000 836766.1 07:00:16.382 INFO ProgressMeter - NC_035780.1:11720948 7.7 6459000 837466.2 07:00:26.436 INFO ProgressMeter - NC_035780.1:12029468 7.9 6604000 838058.7 07:00:36.478 INFO ProgressMeter - NC_035780.1:12335847 8.0 6753000 839146.1 07:00:46.534 INFO ProgressMeter - NC_035780.1:12708744 8.2 6904000 840405.4 07:00:56.548 INFO ProgressMeter - NC_035780.1:13059968 8.4 7057000 841924.8 07:01:06.568 INFO ProgressMeter - NC_035780.1:13252902 8.5 7186000 840567.8 07:01:16.578 INFO ProgressMeter - NC_035780.1:13559602 8.7 7346000 842835.5 07:01:26.600 INFO ProgressMeter - NC_035780.1:13810104 8.9 7504000 844773.9 07:01:36.643 INFO ProgressMeter - NC_035780.1:14187414 9.1 7648000 845061.1 07:01:46.669 INFO ProgressMeter - NC_035780.1:14484503 9.2 7787000 844821.4 07:01:56.698 INFO ProgressMeter - NC_035780.1:14824338 9.4 7932000 845225.0 07:02:06.725 INFO ProgressMeter - NC_035780.1:15226939 9.6 8089000 846873.8 07:02:16.783 INFO ProgressMeter - NC_035780.1:15472240 9.7 8225000 846260.2 07:02:26.790 INFO ProgressMeter - NC_035780.1:15702923 9.9 8372000 846852.7 07:02:36.797 INFO ProgressMeter - NC_035780.1:15884783 10.1 8495000 845038.2 07:02:46.817 INFO ProgressMeter - NC_035780.1:16162073 10.2 8624000 843852.1 07:02:56.867 INFO ProgressMeter - NC_035780.1:16379861 10.4 8760000 843337.5 07:03:06.922 INFO ProgressMeter - NC_035780.1:16621741 10.6 8910000 844159.0 07:03:16.967 INFO ProgressMeter - NC_035780.1:16841692 10.7 9048000 843848.8 07:03:27.081 INFO ProgressMeter - NC_035780.1:17074781 10.9 9191000 843918.1 07:03:37.091 INFO ProgressMeter - NC_035780.1:17444398 11.1 9327000 843484.6 07:03:47.131 INFO ProgressMeter - NC_035780.1:17704043 11.2 9455000 842313.8 07:03:57.170 INFO ProgressMeter - NC_035780.1:17934588 11.4 9580000 840915.2 07:04:07.223 INFO ProgressMeter - NC_035780.1:18348233 11.6 9709000 839886.2 07:04:17.299 INFO ProgressMeter - NC_035780.1:18734392 11.7 9839000 838944.4 07:04:27.300 INFO ProgressMeter - NC_035780.1:19213689 11.9 9967000 837949.1 07:04:37.354 INFO ProgressMeter - NC_035780.1:19483402 12.1 10113000 838412.4 07:04:47.357 INFO ProgressMeter - NC_035780.1:19729331 12.2 10250000 838185.3 07:04:57.419 INFO ProgressMeter - NC_035780.1:19953289 12.4 10386000 837817.1 07:05:07.440 INFO ProgressMeter - NC_035780.1:20244400 12.6 10528000 837981.9 07:05:17.454 INFO ProgressMeter - NC_035780.1:20457581 12.7 10665000 837757.3 07:05:27.470 INFO ProgressMeter - NC_035780.1:20645000 12.9 10796000 837071.2 07:05:37.490 INFO ProgressMeter - NC_035780.1:20923033 13.1 10925000 836245.2 07:05:47.505 INFO ProgressMeter - NC_035780.1:21245182 13.2 11060000 835898.8 07:05:57.536 INFO ProgressMeter - NC_035780.1:21593047 13.4 11180000 834424.9 07:06:07.643 INFO ProgressMeter - NC_035780.1:21894422 13.6 11310000 833646.6 07:06:17.705 INFO ProgressMeter - NC_035780.1:22107154 13.7 11434000 832496.0 07:06:27.724 INFO ProgressMeter - NC_035780.1:22345868 13.9 11544000 830409.0 07:06:37.744 INFO ProgressMeter - NC_035780.1:22620507 14.1 11668000 829365.7 07:06:47.822 INFO ProgressMeter - NC_035780.1:22817399 14.2 11796000 828571.5 07:06:57.831 INFO ProgressMeter - NC_035780.1:23034644 14.4 11924000 827862.0 07:07:07.870 INFO ProgressMeter - NC_035780.1:23276598 14.6 12051000 827071.7 07:07:17.958 INFO ProgressMeter - NC_035780.1:23580614 14.7 12175000 826050.0 07:07:27.960 INFO ProgressMeter - NC_035780.1:23799485 14.9 12309000 825801.6 07:07:37.988 INFO ProgressMeter - NC_035780.1:24003056 15.1 12435000 825004.2 07:07:48.030 INFO ProgressMeter - NC_035780.1:24223464 15.2 12554000 823752.4 07:07:58.042 INFO ProgressMeter - NC_035780.1:24486640 15.4 12663000 821905.4 07:08:08.056 INFO ProgressMeter - NC_035780.1:24765231 15.6 12787000 821059.3 07:08:18.124 INFO ProgressMeter - NC_035780.1:25008369 15.7 12925000 821073.7 07:08:28.155 INFO ProgressMeter - NC_035780.1:25243809 15.9 13057000 820742.4 07:08:38.172 INFO ProgressMeter - NC_035780.1:25497472 16.1 13189000 820430.0 07:08:48.210 INFO ProgressMeter - NC_035780.1:25707289 16.2 13321000 820106.3 07:08:58.247 INFO ProgressMeter - NC_035780.1:25921353 16.4 13454000 819850.9 07:09:08.262 INFO ProgressMeter - NC_035780.1:26147363 16.6 13588000 819679.2 07:09:18.315 INFO ProgressMeter - NC_035780.1:26393323 16.7 13716000 819121.6 07:09:28.352 INFO ProgressMeter - NC_035780.1:26637792 16.9 13839000 818292.3 07:09:38.424 INFO ProgressMeter - NC_035780.1:26890586 17.1 13972000 818036.8 07:09:48.500 INFO ProgressMeter - NC_035780.1:27142956 17.2 14119000 818594.8 07:09:58.547 INFO ProgressMeter - NC_035780.1:27356454 17.4 14254000 818475.7 07:10:08.577 INFO ProgressMeter - NC_035780.1:27541763 17.6 14375000 817575.8 07:10:18.625 INFO ProgressMeter - NC_035780.1:27756406 17.7 14506000 817242.5 07:10:28.678 INFO ProgressMeter - NC_035780.1:27977913 17.9 14640000 817079.0 07:10:38.681 INFO ProgressMeter - NC_035780.1:28226224 18.1 14780000 817288.0 07:10:48.739 INFO ProgressMeter - NC_035780.1:28426756 18.3 14914000 817123.4 07:10:58.751 INFO ProgressMeter - NC_035780.1:28664839 18.4 15052000 817212.9 07:11:08.759 INFO ProgressMeter - NC_035780.1:28900120 18.6 15181000 816819.6 07:11:18.766 INFO ProgressMeter - NC_035780.1:29279279 18.8 15332000 817607.1 07:11:29.381 INFO ProgressMeter - NC_035780.1:29507119 18.9 15467000 817097.4 07:11:39.451 INFO ProgressMeter - NC_035780.1:29738709 19.1 15603000 817037.9 07:11:49.520 INFO ProgressMeter - NC_035780.1:29942274 19.3 15732000 816616.8 07:11:59.552 INFO ProgressMeter - NC_035780.1:30185598 19.4 15866000 816486.9 07:12:09.634 INFO ProgressMeter - NC_035780.1:30437071 19.6 15996000 816119.0 07:12:19.709 INFO ProgressMeter - NC_035780.1:30659755 19.8 16120000 815459.3 07:12:29.719 INFO ProgressMeter - NC_035780.1:30879400 19.9 16254000 815356.7 07:12:39.738 INFO ProgressMeter - NC_035780.1:31125015 20.1 16382000 814951.2 07:12:49.777 INFO ProgressMeter - NC_035780.1:31396304 20.3 16520000 815033.1 07:12:59.796 INFO ProgressMeter - NC_035780.1:31629923 20.4 16651000 814783.0 07:13:09.875 INFO ProgressMeter - NC_035780.1:31838043 20.6 16796000 815177.6 07:13:19.987 INFO ProgressMeter - NC_035780.1:32113322 20.8 16923000 814677.6 07:13:30.019 INFO ProgressMeter - NC_035780.1:32314198 20.9 17057000 814571.9 07:13:40.085 INFO ProgressMeter - NC_035780.1:32480390 21.1 17174000 813640.6 07:13:50.120 INFO ProgressMeter - NC_035780.1:32713948 21.3 17286000 812508.7 07:14:00.176 INFO ProgressMeter - NC_035780.1:32899968 21.4 17418000 812313.9 07:14:10.215 INFO ProgressMeter - NC_035780.1:33170208 21.6 17564000 812780.6 07:14:20.215 INFO ProgressMeter - NC_035780.1:33366825 21.8 17712000 813356.3 07:14:30.271 INFO ProgressMeter - NC_035780.1:33592141 21.9 17856000 813706.4 07:14:40.294 INFO ProgressMeter - NC_035780.1:33845136 22.1 17991000 813664.3 07:14:50.315 INFO ProgressMeter - NC_035780.1:34063280 22.3 18131000 813849.2 07:15:00.364 INFO ProgressMeter - NC_035780.1:34300551 22.4 18263000 813656.7 07:15:10.409 INFO ProgressMeter - NC_035780.1:34554503 22.6 18384000 812983.7 07:15:20.463 INFO ProgressMeter - NC_035780.1:34776644 22.8 18521000 813017.5 07:15:30.521 INFO ProgressMeter - NC_035780.1:34987760 22.9 18653000 812830.6 07:15:40.525 INFO ProgressMeter - NC_035780.1:35233941 23.1 18792000 812980.9 07:15:50.553 INFO ProgressMeter - NC_035780.1:35483400 23.3 18917000 812513.8 07:16:00.596 INFO ProgressMeter - NC_035780.1:35734419 23.4 19065000 813025.5 07:16:10.635 INFO ProgressMeter - NC_035780.1:35956941 23.6 19198000 812897.1 07:16:20.746 INFO ProgressMeter - NC_035780.1:36179124 23.8 19329000 812645.4 07:16:30.755 INFO ProgressMeter - NC_035780.1:36466916 24.0 19460000 812454.9 07:16:40.761 INFO ProgressMeter - NC_035780.1:36722681 24.1 19602000 812724.8 07:16:50.817 INFO ProgressMeter - NC_035780.1:37057867 24.3 19740000 812798.3 07:17:00.858 INFO ProgressMeter - NC_035780.1:37397538 24.5 19878000 812879.2 07:17:10.865 INFO ProgressMeter - NC_035780.1:37739379 24.6 20020000 813140.2 07:17:20.926 INFO ProgressMeter - NC_035780.1:37994613 24.8 20150000 812884.0 07:17:31.006 INFO ProgressMeter - NC_035780.1:38202994 25.0 20281000 812661.1 07:17:41.044 INFO ProgressMeter - NC_035780.1:38441718 25.1 20415000 812583.1 07:17:51.058 INFO ProgressMeter - NC_035780.1:38733800 25.3 20565000 813151.7 07:18:01.062 INFO ProgressMeter - NC_035780.1:39071700 25.5 20707000 813403.9 07:18:11.081 INFO ProgressMeter - 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NC_035780.1:46239298 30.0 24714000 824580.1 07:22:42.012 INFO ProgressMeter - NC_035780.1:46576083 30.1 24848000 824427.1 07:22:52.086 INFO ProgressMeter - NC_035780.1:46880121 30.3 24991000 824578.2 07:23:02.096 INFO ProgressMeter - NC_035780.1:47088475 30.5 25119000 824264.3 07:23:12.171 INFO ProgressMeter - NC_035780.1:47293308 30.6 25243000 823794.1 07:23:22.179 INFO ProgressMeter - NC_035780.1:47527507 30.8 25374000 823586.1 07:23:32.225 INFO ProgressMeter - NC_035780.1:47849422 31.0 25504000 823331.2 07:23:42.238 INFO ProgressMeter - NC_035780.1:48189707 31.1 25640000 823286.2 07:23:52.247 INFO ProgressMeter - NC_035780.1:48462254 31.3 25771000 823083.8 07:24:02.276 INFO ProgressMeter - NC_035780.1:48811048 31.5 25907000 823033.6 07:24:12.323 INFO ProgressMeter - NC_035780.1:49275060 31.6 26034000 822691.8 07:24:22.386 INFO ProgressMeter - NC_035780.1:49605837 31.8 26165000 822472.4 07:24:32.406 INFO ProgressMeter - NC_035780.1:49931647 32.0 26303000 822492.7 07:24:42.430 INFO ProgressMeter - 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NC_035780.1:54329399 34.3 28253000 823197.4 07:27:02.899 INFO ProgressMeter - NC_035780.1:54587363 34.5 28384000 823014.9 07:27:12.942 INFO ProgressMeter - NC_035780.1:54772595 34.7 28511000 822704.4 07:27:22.959 INFO ProgressMeter - NC_035780.1:55002677 34.8 28644000 822579.5 07:27:32.972 INFO ProgressMeter - NC_035780.1:55194938 35.0 28778000 822485.9 07:27:42.998 INFO ProgressMeter - NC_035780.1:55442979 35.2 28909000 822302.8 07:27:53.008 INFO ProgressMeter - NC_035780.1:55679399 35.3 29045000 822269.2 07:28:03.014 INFO ProgressMeter - NC_035780.1:55872646 35.5 29177000 822125.1 07:28:13.083 INFO ProgressMeter - NC_035780.1:56129416 35.7 29311000 822013.5 07:28:23.118 INFO ProgressMeter - NC_035780.1:56340197 35.8 29445000 821916.3 07:28:33.165 INFO ProgressMeter - NC_035780.1:56602016 36.0 29581000 821871.0 07:28:43.170 INFO ProgressMeter - NC_035780.1:56829358 36.2 29731000 822229.2 07:28:53.172 INFO ProgressMeter - NC_035780.1:57025047 36.3 29862000 822062.2 07:29:03.257 INFO ProgressMeter - 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NC_035780.1:60091832 38.7 31780000 821846.2 07:31:23.808 INFO ProgressMeter - NC_035780.1:60295125 38.8 31923000 821988.4 07:31:33.898 INFO ProgressMeter - NC_035780.1:60497014 39.0 32054000 821803.0 07:31:43.967 INFO ProgressMeter - NC_035780.1:60763532 39.2 32196000 821907.3 07:31:53.983 INFO ProgressMeter - NC_035780.1:60979083 39.3 32330000 821825.9 07:32:04.049 INFO ProgressMeter - NC_035780.1:61201957 39.5 32473000 821955.6 07:32:14.093 INFO ProgressMeter - NC_035780.1:61418314 39.7 32599000 821663.3 07:32:24.139 INFO ProgressMeter - NC_035780.1:61700965 39.8 32732000 821548.9 07:32:34.195 INFO ProgressMeter - NC_035780.1:61944771 40.0 32865000 821431.3 07:32:44.311 INFO ProgressMeter - NC_035780.1:62262205 40.2 33008000 821543.4 07:32:54.344 INFO ProgressMeter - NC_035780.1:62535961 40.3 33137000 821335.8 07:33:04.381 INFO ProgressMeter - NC_035780.1:62737604 40.5 33278000 821424.8 07:33:14.414 INFO ProgressMeter - NC_035780.1:62941266 40.7 33406000 821194.8 07:33:24.515 INFO ProgressMeter - NC_035780.1:63159722 40.8 33541000 821115.3 07:33:34.564 INFO ProgressMeter - NC_035780.1:63386596 41.0 33670000 820907.5 07:33:44.569 INFO ProgressMeter - NC_035780.1:63592639 41.2 33815000 821104.9 07:33:54.573 INFO ProgressMeter - NC_035780.1:63790479 41.3 33953000 821131.0 07:34:04.588 INFO ProgressMeter - NC_035780.1:64033875 41.5 34091000 821153.6 07:34:14.619 INFO ProgressMeter - NC_035780.1:64402866 41.7 34234000 821290.8 07:34:24.628 INFO ProgressMeter - NC_035780.1:64694789 41.8 34383000 821577.4 07:34:34.661 INFO ProgressMeter - NC_035780.1:65111929 42.0 34517000 821497.2 07:34:44.691 INFO ProgressMeter - NC_035780.1:65452671 42.2 34650000 821394.3 07:34:54.709 INFO ProgressMeter - NC_035781.1:30321 42.4 34758000 820706.2 07:35:04.793 INFO ProgressMeter - NC_035781.1:304538 42.5 34901000 820825.3 07:35:14.859 INFO ProgressMeter - NC_035781.1:523510 42.7 35042000 820902.5 07:35:24.918 INFO ProgressMeter - NC_035781.1:712098 42.9 35175000 820794.6 07:35:34.933 INFO ProgressMeter - NC_035781.1:904114 43.0 35303000 820585.3 07:35:44.965 INFO ProgressMeter - NC_035781.1:1116860 43.2 35432000 820395.3 07:35:55.027 INFO ProgressMeter - NC_035781.1:1324936 43.4 35558000 820128.3 07:36:05.052 INFO ProgressMeter - NC_035781.1:1589192 43.5 35691000 820035.7 07:36:15.079 INFO ProgressMeter - NC_035781.1:1755561 43.7 35802000 819439.6 07:36:25.165 INFO ProgressMeter - NC_035781.1:2038468 43.9 35936000 819354.2 07:36:35.208 INFO ProgressMeter - NC_035781.1:2235161 44.0 36057000 818987.4 07:36:45.247 INFO ProgressMeter - NC_035781.1:2415739 44.2 36185000 818783.1 07:36:55.257 INFO ProgressMeter - NC_035781.1:2591889 44.4 36308000 818476.5 07:37:05.318 INFO ProgressMeter - NC_035781.1:2823291 44.5 36441000 818381.2 07:37:15.335 INFO ProgressMeter - NC_035781.1:3021982 44.7 36575000 818322.4 07:37:25.394 INFO ProgressMeter - NC_035781.1:3204505 44.9 36701000 818072.9 07:37:35.452 INFO ProgressMeter - NC_035781.1:3399524 45.0 36835000 818003.3 07:37:45.517 INFO ProgressMeter - NC_035781.1:3617136 45.2 36977000 818109.0 07:37:55.521 INFO ProgressMeter - NC_035781.1:3833109 45.4 37107000 817968.1 07:38:05.596 INFO ProgressMeter - NC_035781.1:4069927 45.5 37252000 818135.8 07:38:15.630 INFO ProgressMeter - NC_035781.1:4255279 45.7 37396000 818293.2 07:38:25.663 INFO ProgressMeter - NC_035781.1:4467600 45.9 37527000 818165.8 07:38:35.666 INFO ProgressMeter - NC_035781.1:4705032 46.0 37672000 818352.5 07:38:45.707 INFO ProgressMeter - NC_035781.1:4892390 46.2 37803000 818223.7 07:38:55.786 INFO ProgressMeter - NC_035781.1:5090545 46.4 37931000 818020.0 07:39:05.877 INFO ProgressMeter - NC_035781.1:5280702 46.5 38058000 817792.7 07:39:15.914 INFO ProgressMeter - NC_035781.1:5476707 46.7 38190000 817689.8 07:39:25.961 INFO ProgressMeter - NC_035781.1:5646294 46.9 38302000 817158.1 07:39:35.977 INFO ProgressMeter - NC_035781.1:5842237 47.0 38430000 816979.3 07:39:46.008 INFO ProgressMeter - NC_035781.1:6012057 47.2 38548000 816585.6 07:39:56.035 INFO ProgressMeter - NC_035781.1:6272057 47.4 38681000 816512.5 07:40:06.071 INFO ProgressMeter - NC_035781.1:6498780 47.5 38813000 816416.2 07:40:16.121 INFO ProgressMeter - NC_035781.1:6731154 47.7 38968000 816798.8 07:40:26.252 INFO ProgressMeter - NC_035781.1:6970642 47.9 39107000 816821.4 07:40:36.282 INFO ProgressMeter - NC_035781.1:7216763 48.0 39243000 816810.1 07:40:46.325 INFO ProgressMeter - NC_035781.1:7392083 48.2 39367000 816546.2 07:40:56.329 INFO ProgressMeter - NC_035781.1:7585270 48.4 39512000 816729.3 07:41:06.378 INFO ProgressMeter - NC_035781.1:7813771 48.5 39656000 816877.8 07:41:16.406 INFO ProgressMeter - NC_035781.1:8009030 48.7 39789000 816805.4 07:41:26.753 INFO ProgressMeter - NC_035781.1:8397861 48.9 39907000 816337.8 07:41:36.840 INFO ProgressMeter - NC_035781.1:8599888 49.1 40039000 816231.0 07:41:46.991 INFO ProgressMeter - NC_035781.1:8793715 49.2 40170000 816086.9 07:41:57.027 INFO ProgressMeter - NC_035781.1:9035252 49.4 40309000 816137.4 07:42:07.080 INFO ProgressMeter - NC_035781.1:9225330 49.6 40437000 815961.0 07:42:17.144 INFO ProgressMeter - NC_035781.1:9425087 49.7 40576000 816003.9 07:42:27.189 INFO ProgressMeter - NC_035781.1:9602442 49.9 40698000 815711.1 07:42:37.225 INFO ProgressMeter - NC_035781.1:9839822 50.1 40852000 816061.8 07:42:47.279 INFO ProgressMeter - NC_035781.1:10035646 50.2 40985000 815987.3 07:42:57.288 INFO ProgressMeter - NC_035781.1:10250734 50.4 41122000 816004.7 07:43:07.332 INFO ProgressMeter - NC_035781.1:10499243 50.6 41265000 816131.3 07:43:17.392 INFO ProgressMeter - NC_035781.1:10742346 50.7 41403000 816154.2 07:43:27.458 INFO ProgressMeter - NC_035781.1:10946839 50.9 41540000 816155.7 07:43:37.472 INFO ProgressMeter - NC_035781.1:11156583 51.1 41667000 815975.2 07:43:47.524 INFO ProgressMeter - NC_035781.1:11374434 51.2 41803000 815961.5 07:43:57.536 INFO ProgressMeter - NC_035781.1:11627529 51.4 41927000 815725.0 07:44:08.020 INFO ProgressMeter - NC_035781.1:11807260 51.6 42059000 815520.7 07:44:18.046 INFO ProgressMeter - NC_035781.1:12016424 51.7 42191000 815438.1 07:44:28.089 INFO ProgressMeter - NC_035781.1:12261118 51.9 42330000 815486.5 07:44:38.148 INFO ProgressMeter - NC_035781.1:12448835 52.1 42463000 815415.1 07:44:48.577 INFO ProgressMeter - NC_035781.1:12673586 52.2 42593000 815190.6 07:44:58.612 INFO ProgressMeter - NC_035781.1:12894555 52.4 42729000 815184.1 07:45:08.669 INFO ProgressMeter - NC_035781.1:13071983 52.6 42850000 814886.7 07:45:18.705 INFO ProgressMeter - NC_035781.1:13269403 52.8 42989000 814937.8 07:45:28.745 INFO ProgressMeter - NC_035781.1:13448631 52.9 43113000 814704.1 07:45:38.802 INFO ProgressMeter - NC_035781.1:13649257 53.1 43249000 814693.6 07:45:48.822 INFO ProgressMeter - NC_035781.1:13835393 53.3 43370000 814410.9 07:45:58.858 INFO ProgressMeter - NC_035781.1:14047461 53.4 43498000 814257.0 07:46:08.862 INFO ProgressMeter - NC_035781.1:14254267 53.6 43622000 814037.4 07:46:18.895 INFO ProgressMeter - NC_035781.1:14464039 53.8 43756000 813998.2 07:46:28.919 INFO ProgressMeter - NC_035781.1:14679035 53.9 43881000 813794.1 07:46:38.970 INFO ProgressMeter - NC_035781.1:14894836 54.1 44010000 813658.7 07:46:48.995 INFO ProgressMeter - NC_035781.1:15091057 54.3 44127000 813309.5 07:46:59.064 INFO ProgressMeter - NC_035781.1:15350487 54.4 44261000 813263.8 07:47:09.127 INFO ProgressMeter - NC_035781.1:15535258 54.6 44380000 812945.1 07:47:19.188 INFO ProgressMeter - NC_035781.1:15727679 54.8 44510000 812829.7 07:47:29.238 INFO ProgressMeter - NC_035781.1:16013750 54.9 44635000 812626.7 07:47:39.308 INFO ProgressMeter - NC_035781.1:16309687 55.1 44773000 812656.0 07:47:49.363 INFO ProgressMeter - NC_035781.1:16534885 55.3 44910000 812670.7 07:47:59.370 INFO ProgressMeter - NC_035781.1:16714808 55.4 45036000 812498.6 07:48:09.999 INFO ProgressMeter - NC_035781.1:16978194 55.6 45177000 812445.9 07:48:20.083 INFO ProgressMeter - NC_035781.1:17246376 55.8 45319000 812543.7 07:48:30.101 INFO ProgressMeter - NC_035781.1:17564516 55.9 45466000 812746.2 07:48:40.165 INFO ProgressMeter - 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NC_035782.1:76881058 134.4 109842000 817020.0 09:07:10.243 INFO ProgressMeter - NC_035783.1:153443 134.6 109961000 816884.4 09:07:20.251 INFO ProgressMeter - NC_035783.1:492409 134.8 110108000 816964.1 09:07:30.297 INFO ProgressMeter - NC_035783.1:815021 134.9 110245000 816965.7 09:07:40.331 INFO ProgressMeter - NC_035783.1:1133534 135.1 110397000 817079.5 09:07:50.364 INFO ProgressMeter - NC_035783.1:1397669 135.3 110549000 817193.1 09:08:00.407 INFO ProgressMeter - NC_035783.1:1626301 135.4 110673000 817098.7 09:08:10.430 INFO ProgressMeter - NC_035783.1:1874003 135.6 110805000 817065.6 09:08:20.483 INFO ProgressMeter - NC_035783.1:2067234 135.8 110946000 817095.8 09:08:30.546 INFO ProgressMeter - NC_035783.1:2281966 135.9 111087000 817124.9 09:08:40.608 INFO ProgressMeter - NC_035783.1:2470204 136.1 111222000 817110.0 09:08:50.670 INFO ProgressMeter - NC_035783.1:2680038 136.3 111362000 817131.9 09:09:00.680 INFO ProgressMeter - NC_035783.1:2902228 136.5 111504000 817173.4 09:09:10.716 INFO ProgressMeter - NC_035783.1:3103331 136.6 111640000 817168.3 09:09:20.776 INFO ProgressMeter - NC_035783.1:3317688 136.8 111777000 817168.3 09:09:30.970 INFO ProgressMeter - NC_035783.1:3572725 137.0 111921000 817206.0 09:09:40.973 INFO ProgressMeter - NC_035783.1:3892573 137.1 112068000 817284.4 09:09:50.986 INFO ProgressMeter - NC_035783.1:4267050 137.3 112219000 817390.8 09:10:01.044 INFO ProgressMeter - NC_035783.1:4577203 137.5 112367000 817470.7 09:10:11.073 INFO ProgressMeter - NC_035783.1:4886112 137.6 112513000 817538.7 09:10:21.092 INFO ProgressMeter - NC_035783.1:5199602 137.8 112658000 817600.3 09:10:31.115 INFO ProgressMeter - NC_035783.1:5462866 138.0 112800000 817639.6 09:10:41.170 INFO ProgressMeter - NC_035783.1:5689081 138.1 112930000 817588.7 09:10:51.171 INFO ProgressMeter - NC_035783.1:5902447 138.3 113073000 817637.3 09:11:01.180 INFO ProgressMeter - NC_035783.1:6205637 138.5 113215000 817677.8 09:11:11.235 INFO ProgressMeter - NC_035783.1:6553157 138.6 113362000 817749.7 09:11:21.247 INFO ProgressMeter - 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NC_035783.1:10128959 141.0 115382000 818432.8 09:13:42.437 INFO ProgressMeter - NC_035783.1:10329610 141.1 115521000 818445.8 09:13:52.484 INFO ProgressMeter - NC_035783.1:10534387 141.3 115664000 818487.9 09:14:02.520 INFO ProgressMeter - NC_035783.1:10703276 141.5 115785000 818375.5 09:14:12.592 INFO ProgressMeter - NC_035783.1:10870520 141.6 115899000 818210.4 09:14:22.668 INFO ProgressMeter - NC_035783.1:11045371 141.8 116031000 818172.3 09:14:32.689 INFO ProgressMeter - NC_035783.1:11275249 142.0 116168000 818174.8 09:14:42.689 INFO ProgressMeter - NC_035783.1:11608053 142.2 116298000 818130.0 09:14:52.765 INFO ProgressMeter - NC_035783.1:11794410 142.3 116435000 818127.3 09:15:02.767 INFO ProgressMeter - NC_035783.1:12031950 142.5 116568000 818103.5 09:15:12.768 INFO ProgressMeter - NC_035783.1:12212449 142.7 116696000 818044.9 09:15:22.846 INFO ProgressMeter - NC_035783.1:12392267 142.8 116827000 818000.1 09:15:32.858 INFO ProgressMeter - NC_035783.1:12621478 143.0 116969000 818038.5 09:15:42.932 INFO ProgressMeter - NC_035783.1:12845363 143.2 117111000 818071.0 09:15:52.992 INFO ProgressMeter - NC_035783.1:13032344 143.3 117245000 818049.0 09:16:02.997 INFO ProgressMeter - NC_035783.1:13252636 143.5 117381000 818046.1 09:16:13.026 INFO ProgressMeter - NC_035783.1:13509417 143.7 117524000 818089.8 09:16:23.048 INFO ProgressMeter - NC_035783.1:13717714 143.8 117664000 818113.0 09:16:33.087 INFO ProgressMeter - NC_035783.1:13948871 144.0 117807000 818155.5 09:16:43.160 INFO ProgressMeter - NC_035783.1:14137976 144.2 117940000 818125.3 09:16:53.171 INFO ProgressMeter - NC_035783.1:14327713 144.3 118078000 818135.6 09:17:03.249 INFO ProgressMeter - NC_035783.1:14518903 144.5 118217000 818146.6 09:17:13.316 INFO ProgressMeter - NC_035783.1:14740732 144.7 118364000 818213.8 09:17:23.340 INFO ProgressMeter - NC_035783.1:14941959 144.8 118499000 818202.1 09:17:33.386 INFO ProgressMeter - NC_035783.1:15131922 145.0 118635000 818195.3 09:17:43.426 INFO ProgressMeter - NC_035783.1:15332818 145.2 118781000 818257.9 09:17:53.466 INFO ProgressMeter - NC_035783.1:15526681 145.3 118912000 818217.1 09:18:03.483 INFO ProgressMeter - NC_035783.1:15755870 145.5 119056000 818268.0 09:18:13.528 INFO ProgressMeter - NC_035783.1:15944868 145.7 119183000 818199.4 09:18:23.561 INFO ProgressMeter - NC_035783.1:16175527 145.8 119320000 818200.6 09:18:33.676 INFO ProgressMeter - NC_035783.1:16376133 146.0 119443000 818098.4 09:18:43.710 INFO ProgressMeter - NC_035783.1:16587618 146.2 119592000 818181.7 09:18:53.713 INFO ProgressMeter - NC_035783.1:16784149 146.3 119729000 818185.8 09:19:03.782 INFO ProgressMeter - NC_035783.1:16990694 146.5 119874000 818238.3 09:19:13.828 INFO ProgressMeter - NC_035783.1:17210535 146.7 120022000 818313.3 09:19:23.839 INFO ProgressMeter - NC_035783.1:17407422 146.8 120159000 818316.5 09:19:33.863 INFO ProgressMeter - NC_035783.1:17580177 147.0 120280000 818209.6 09:19:43.885 INFO ProgressMeter - NC_035783.1:17766568 147.2 120420000 818232.2 09:19:53.923 INFO ProgressMeter - NC_035783.1:17949952 147.3 120554000 818212.6 09:20:03.976 INFO ProgressMeter - NC_035783.1:18143014 147.5 120686000 818178.1 09:20:14.006 INFO ProgressMeter - NC_035783.1:18335778 147.7 120812000 818105.1 09:20:24.009 INFO ProgressMeter - NC_035783.1:18511363 147.8 120946000 818089.0 09:20:34.079 INFO ProgressMeter - NC_035783.1:18715588 148.0 121071000 818005.8 09:20:44.144 INFO ProgressMeter - NC_035783.1:18974881 148.2 121216000 818058.3 09:20:54.193 INFO ProgressMeter - NC_035783.1:19166905 148.3 121352000 818051.5 09:21:04.223 INFO ProgressMeter - NC_035783.1:19365657 148.5 121493000 818080.1 09:21:14.239 INFO ProgressMeter - NC_035783.1:19538364 148.7 121615000 817982.2 09:21:24.271 INFO ProgressMeter - NC_035783.1:19743683 148.8 121751000 817977.0 09:21:34.378 INFO ProgressMeter - NC_035783.1:19911969 149.0 121878000 817904.6 09:21:44.465 INFO ProgressMeter - NC_035783.1:20095675 149.2 122006000 817840.9 09:21:54.516 INFO ProgressMeter - NC_035783.1:20293822 149.3 122140000 817820.8 09:22:04.533 INFO ProgressMeter - NC_035783.1:20470274 149.5 122257000 817690.2 09:22:14.551 INFO ProgressMeter - NC_035783.1:20678493 149.7 122390000 817666.6 09:22:24.668 INFO ProgressMeter - NC_035783.1:20824291 149.9 122501000 817487.3 09:22:34.714 INFO ProgressMeter - NC_035783.1:21006626 150.0 122634000 817461.5 09:22:44.776 INFO ProgressMeter - NC_035783.1:21207928 150.2 122767000 817434.2 09:22:54.826 INFO ProgressMeter - NC_035783.1:21438009 150.4 122920000 817541.2 09:23:05.431 INFO ProgressMeter - NC_035783.1:21674335 150.5 123059000 817504.6 09:23:15.472 INFO ProgressMeter - NC_035783.1:21956766 150.7 123196000 817505.9 09:23:25.560 INFO ProgressMeter - NC_035783.1:22236834 150.9 123333000 817502.9 09:23:35.615 INFO ProgressMeter - NC_035783.1:22516835 151.0 123470000 817502.9 09:23:45.648 INFO ProgressMeter - NC_035783.1:22810329 151.2 123608000 817511.5 09:23:55.696 INFO ProgressMeter - NC_035783.1:22990008 151.4 123727000 817393.2 09:24:05.758 INFO ProgressMeter - NC_035783.1:23211938 151.5 123861000 817372.9 09:24:15.777 INFO ProgressMeter - NC_035783.1:23450534 151.7 123991000 817330.2 09:24:25.796 INFO ProgressMeter - NC_035783.1:23680008 151.9 124127000 817327.0 09:24:35.814 INFO ProgressMeter - NC_035783.1:23901872 152.0 124257000 817284.5 09:24:45.822 INFO ProgressMeter - NC_035783.1:24134115 152.2 124388000 817249.5 09:24:55.843 INFO ProgressMeter - NC_035783.1:24391206 152.4 124528000 817272.5 09:25:05.905 INFO ProgressMeter - NC_035783.1:24604728 152.5 124647000 817154.1 09:25:15.950 INFO ProgressMeter - NC_035783.1:24836712 152.7 124792000 817207.8 09:25:25.976 INFO ProgressMeter - NC_035783.1:25085755 152.9 124924000 817178.0 09:25:36.080 INFO ProgressMeter - NC_035783.1:25318899 153.0 125049000 817095.6 09:25:46.161 INFO ProgressMeter - NC_035783.1:25509102 153.2 125168000 816976.2 09:25:56.183 INFO ProgressMeter - NC_035783.1:25865500 153.4 125297000 816927.6 09:26:06.621 INFO ProgressMeter - NC_035783.1:26154302 153.5 125429000 816861.7 09:26:16.667 INFO ProgressMeter - NC_035783.1:26483974 153.7 125572000 816902.2 09:26:26.668 INFO ProgressMeter - NC_035783.1:26827019 153.9 125720000 816979.1 09:26:36.736 INFO ProgressMeter - NC_035783.1:27149083 154.1 125862000 817011.0 09:26:46.744 INFO ProgressMeter - NC_035783.1:27433857 154.2 125999000 817015.7 09:26:56.756 INFO ProgressMeter - NC_035783.1:27747587 154.4 126126000 816955.2 09:27:06.783 INFO ProgressMeter - NC_035783.1:27961220 154.6 126262000 816951.8 09:27:16.786 INFO ProgressMeter - NC_035783.1:28197105 154.7 126394000 816924.7 09:27:26.843 INFO ProgressMeter - NC_035783.1:28417771 154.9 126525000 816886.5 09:27:36.905 INFO ProgressMeter - NC_035783.1:28630161 155.1 126663000 816892.9 09:27:46.958 INFO ProgressMeter - NC_035783.1:28879678 155.2 126785000 816797.1 09:27:56.966 INFO ProgressMeter - NC_035783.1:29156961 155.4 126921000 816795.5 09:28:07.013 INFO ProgressMeter - NC_035783.1:29457129 155.6 127056000 816784.1 09:28:17.093 INFO ProgressMeter - NC_035783.1:29766693 155.7 127192000 816776.3 09:28:27.126 INFO ProgressMeter - NC_035783.1:30012289 155.9 127326000 816759.8 09:28:37.130 INFO ProgressMeter - NC_035783.1:30267430 156.1 127477000 816854.7 09:28:47.149 INFO ProgressMeter - NC_035783.1:30481115 156.2 127612000 816845.8 09:28:57.195 INFO ProgressMeter - NC_035783.1:30689479 156.4 127748000 816840.8 09:29:07.199 INFO ProgressMeter - NC_035783.1:30871359 156.6 127864000 816711.9 09:29:17.210 INFO ProgressMeter - NC_035783.1:31167548 156.7 128002000 816722.9 09:29:27.238 INFO ProgressMeter - NC_035783.1:31426919 156.9 128132000 816681.5 09:29:37.278 INFO ProgressMeter - NC_035783.1:31727852 157.1 128275000 816721.8 09:29:47.788 INFO ProgressMeter - NC_035783.1:31921949 157.2 128405000 816638.8 09:29:57.834 INFO ProgressMeter - NC_035783.1:32131921 157.4 128545000 816659.5 09:30:07.920 INFO ProgressMeter - NC_035783.1:32364215 157.6 128687000 816689.5 09:30:17.997 INFO ProgressMeter - NC_035783.1:32550128 157.7 128816000 816637.7 09:30:28.036 INFO ProgressMeter - NC_035783.1:32793493 157.9 128951000 816627.4 09:30:38.092 INFO ProgressMeter - NC_035783.1:33074867 158.1 129099000 816697.8 09:30:48.115 INFO ProgressMeter - NC_035783.1:33372879 158.2 129229000 816657.2 09:30:58.116 INFO ProgressMeter - NC_035783.1:33704965 158.4 129369000 816681.6 09:31:08.126 INFO ProgressMeter - NC_035783.1:33968976 158.6 129505000 816680.1 09:31:18.147 INFO ProgressMeter - NC_035783.1:34259046 158.7 129632000 816620.9 09:31:28.220 INFO ProgressMeter - NC_035783.1:34525257 158.9 129757000 816544.7 09:31:38.272 INFO ProgressMeter - NC_035783.1:34711673 159.1 129883000 816476.8 09:31:48.328 INFO ProgressMeter - NC_035783.1:34900966 159.2 130008000 816402.5 09:31:58.427 INFO ProgressMeter - NC_035783.1:35114338 159.4 130125000 816274.4 09:32:08.443 INFO ProgressMeter - NC_035783.1:35328636 159.6 130258000 816254.0 09:32:18.483 INFO ProgressMeter - NC_035783.1:35552802 159.7 130386000 816200.2 09:32:28.558 INFO ProgressMeter - NC_035783.1:35731239 159.9 130508000 816106.1 09:32:38.598 INFO ProgressMeter - NC_035783.1:35928380 160.1 130636000 816052.6 09:32:48.664 INFO ProgressMeter - NC_035783.1:36158459 160.3 130765000 816003.3 09:32:58.723 INFO ProgressMeter - NC_035783.1:36360694 160.4 130894000 815954.6 09:33:08.748 INFO ProgressMeter - NC_035783.1:36556057 160.6 131016000 815865.4 09:33:18.755 INFO ProgressMeter - NC_035783.1:36766051 160.8 131149000 815846.3 09:33:28.787 INFO ProgressMeter - NC_035783.1:36978923 160.9 131277000 815794.1 09:33:38.806 INFO ProgressMeter - NC_035783.1:37274527 161.1 131415000 815805.0 09:33:48.848 INFO ProgressMeter - NC_035783.1:37621290 161.3 131567000 815900.9 09:33:58.901 INFO ProgressMeter - NC_035783.1:37932866 161.4 131717000 815983.3 09:34:08.906 INFO ProgressMeter - NC_035783.1:38265118 161.6 131857000 816007.6 09:34:18.914 INFO ProgressMeter - NC_035783.1:38609242 161.8 132009000 816105.9 09:34:28.977 INFO ProgressMeter - NC_035783.1:38873211 161.9 132153000 816149.9 09:34:39.001 INFO ProgressMeter - NC_035783.1:39238863 162.1 132305000 816246.4 09:34:49.044 INFO ProgressMeter - NC_035783.1:39626435 162.3 132450000 816298.0 09:34:59.045 INFO ProgressMeter - NC_035783.1:39908568 162.4 132585000 816291.5 09:35:09.071 INFO ProgressMeter - NC_035783.1:40202948 162.6 132730000 816344.4 09:35:19.114 INFO ProgressMeter - NC_035783.1:40507486 162.8 132872000 816377.3 09:35:29.168 INFO ProgressMeter - NC_035783.1:40860689 162.9 133016000 816421.5 09:35:39.232 INFO ProgressMeter - NC_035783.1:41183285 163.1 133168000 816513.8 09:35:49.254 INFO ProgressMeter - NC_035783.1:41482126 163.3 133310000 816548.2 09:35:59.305 INFO ProgressMeter - NC_035783.1:41776120 163.4 133456000 816604.6 09:36:09.351 INFO ProgressMeter - NC_035783.1:42074056 163.6 133589000 816581.8 09:36:19.397 INFO ProgressMeter - NC_035783.1:42344138 163.8 133723000 816565.2 09:36:29.410 INFO ProgressMeter - NC_035783.1:42542550 163.9 133850000 816508.6 09:36:39.415 INFO ProgressMeter - NC_035783.1:42751856 164.1 133986000 816507.7 09:36:49.439 INFO ProgressMeter - NC_035783.1:42990411 164.3 134128000 816541.7 09:36:59.496 INFO ProgressMeter - NC_035783.1:43201068 164.4 134272000 816585.1 09:37:09.523 INFO ProgressMeter - NC_035783.1:43453686 164.6 134408000 816582.3 09:37:19.541 INFO ProgressMeter - NC_035783.1:43772302 164.8 134563000 816695.5 09:37:29.591 INFO ProgressMeter - NC_035783.1:44088787 164.9 134704000 816721.0 09:37:39.630 INFO ProgressMeter - NC_035783.1:44305441 165.1 134840000 816717.1 09:37:49.697 INFO ProgressMeter - NC_035783.1:44517533 165.3 134974000 816698.7 09:37:59.773 INFO ProgressMeter - NC_035783.1:44751800 165.4 135123000 816770.3 09:38:09.838 INFO ProgressMeter - NC_035783.1:44980152 165.6 135256000 816746.1 09:38:19.907 INFO ProgressMeter - NC_035783.1:45177563 165.8 135396000 816763.8 09:38:29.938 INFO ProgressMeter - NC_035783.1:45388940 165.9 135539000 816802.7 09:38:39.963 INFO ProgressMeter - NC_035783.1:45609290 166.1 135694000 816914.2 09:38:50.000 INFO ProgressMeter - NC_035783.1:45855164 166.3 135861000 817096.7 09:39:00.033 INFO ProgressMeter - NC_035783.1:46093339 166.4 136027000 817273.2 09:39:10.036 INFO ProgressMeter - NC_035783.1:46339846 166.6 136185000 817403.7 09:39:20.067 INFO ProgressMeter - NC_035783.1:46592266 166.8 136323000 817411.8 09:39:30.117 INFO ProgressMeter - NC_035783.1:46770116 166.9 136452000 817364.3 09:39:40.167 INFO ProgressMeter - NC_035783.1:47010990 167.1 136589000 817364.9 09:39:50.192 INFO ProgressMeter - NC_035783.1:47292695 167.3 136734000 817415.3 09:40:00.221 INFO ProgressMeter - NC_035783.1:47532937 167.4 136905000 817620.5 09:40:10.288 INFO ProgressMeter - NC_035783.1:47879523 167.6 137063000 817744.7 09:40:20.336 INFO ProgressMeter - NC_035783.1:48139128 167.8 137211000 817810.6 09:40:30.358 INFO ProgressMeter - NC_035783.1:48346332 167.9 137363000 817902.3 09:40:40.427 INFO ProgressMeter - NC_035783.1:48555401 168.1 137518000 818007.9 09:40:50.452 INFO ProgressMeter - NC_035783.1:48907333 168.3 137676000 818134.6 09:41:00.483 INFO ProgressMeter - NC_035783.1:49114643 168.4 137811000 818124.0 Chromosome NC_035783.1 position 49364746 (TileDB column 253847288) has too many alleles in the combined VCF record : 53 : current limit : 50. Fields, such as PL, with length equal to the number of genotypes will NOT be added for this location. 09:41:10.249 WARN MinimalGenotypingEngine - Attempting to genotype more than 50 alleles. Site will be skipped at location NC_035783.1:49364746 09:41:10.536 INFO ProgressMeter - NC_035783.1:49370105 168.6 137947000 818117.6 09:41:20.588 INFO ProgressMeter - NC_035783.1:49587709 168.8 138074000 818058.0 09:41:30.590 INFO ProgressMeter - NC_035783.1:49896856 168.9 138212000 818067.7 09:41:40.667 INFO ProgressMeter - NC_035783.1:50117288 169.1 138332000 817964.8 09:41:50.677 INFO ProgressMeter - NC_035783.1:50312336 169.3 138462000 817926.6 09:42:00.700 INFO ProgressMeter - NC_035783.1:50537702 169.5 138588000 817863.9 09:42:10.730 INFO ProgressMeter - NC_035783.1:50764773 169.6 138723000 817853.7 09:42:20.752 INFO ProgressMeter - NC_035783.1:50965150 169.8 138844000 817761.8 09:42:30.826 INFO ProgressMeter - NC_035783.1:51160282 170.0 138967000 817677.6 09:42:40.919 INFO ProgressMeter - NC_035783.1:51389649 170.1 139103000 817668.5 09:42:50.954 INFO ProgressMeter - NC_035783.1:51601421 170.3 139228000 817599.5 09:43:00.957 INFO ProgressMeter - NC_035783.1:51811242 170.5 139356000 817550.8 09:43:11.006 INFO ProgressMeter - NC_035783.1:52020644 170.6 139480000 817475.0 09:43:21.032 INFO ProgressMeter - NC_035783.1:52240888 170.8 139616000 817471.5 09:43:31.094 INFO ProgressMeter - NC_035783.1:52453354 171.0 139753000 817471.0 09:43:41.903 INFO ProgressMeter - NC_035783.1:52685299 171.1 139903000 817487.0 09:43:51.913 INFO ProgressMeter - NC_035783.1:52918318 171.3 140041000 817496.4 09:44:01.996 INFO ProgressMeter - NC_035783.1:53136847 171.5 140171000 817453.3 09:44:12.025 INFO ProgressMeter - NC_035783.1:53397107 171.6 140318000 817513.7 09:44:22.045 INFO ProgressMeter - NC_035783.1:53687501 171.8 140461000 817551.4 09:44:32.098 INFO ProgressMeter - NC_035783.1:54041205 172.0 140598000 817551.5 09:44:42.157 INFO ProgressMeter - NC_035783.1:54365327 172.1 140738000 817568.6 09:44:52.174 INFO ProgressMeter - NC_035783.1:54678949 172.3 140879000 817594.7 09:45:02.232 INFO ProgressMeter - NC_035783.1:55025238 172.5 141029000 817669.8 09:45:12.324 INFO ProgressMeter - NC_035783.1:55294793 172.6 141170000 817689.9 09:45:22.358 INFO ProgressMeter - NC_035783.1:55502288 172.8 141305000 817679.8 09:45:32.448 INFO ProgressMeter - NC_035783.1:55767968 173.0 141448000 817711.5 09:45:42.506 INFO ProgressMeter - NC_035783.1:56105984 173.1 141586000 817716.9 09:45:52.546 INFO ProgressMeter - NC_035783.1:56423499 173.3 141737000 817798.6 09:46:02.579 INFO ProgressMeter - NC_035783.1:56645796 173.5 141863000 817736.7 09:46:12.605 INFO ProgressMeter - NC_035783.1:56844458 173.6 142001000 817744.5 09:46:22.659 INFO ProgressMeter - NC_035783.1:57054343 173.8 142136000 817732.8 09:46:32.737 INFO ProgressMeter - NC_035783.1:57269095 174.0 142275000 817742.3 09:46:42.738 INFO ProgressMeter - NC_035783.1:57459043 174.2 142398000 817665.9 09:46:52.801 INFO ProgressMeter - NC_035783.1:57760114 174.3 142539000 817688.1 09:47:02.816 INFO ProgressMeter - NC_035783.1:57999260 174.5 142679000 817708.2 09:47:12.818 INFO ProgressMeter - NC_035783.1:58294916 174.7 142823000 817752.2 09:47:22.850 INFO ProgressMeter - NC_035783.1:58617715 174.8 142975000 817839.6 09:47:32.877 INFO ProgressMeter - NC_035783.1:58934529 175.0 143122000 817898.6 09:47:42.879 INFO ProgressMeter - NC_035783.1:59289646 175.2 143272000 817976.5 09:47:52.949 INFO ProgressMeter - NC_035783.1:59607980 175.3 143417000 818020.6 09:48:02.968 INFO ProgressMeter - NC_035784.1:164435 175.5 143522000 817840.5 09:48:13.032 INFO ProgressMeter - NC_035784.1:458369 175.7 143660000 817845.2 09:48:23.059 INFO ProgressMeter - NC_035784.1:754139 175.8 143794000 817830.0 09:48:33.110 INFO ProgressMeter - NC_035784.1:991133 176.0 143929000 817818.6 09:48:43.174 INFO ProgressMeter - NC_035784.1:1281309 176.2 144057000 817766.5 09:48:53.225 INFO ProgressMeter - NC_035784.1:1574137 176.3 144186000 817721.2 09:49:03.269 INFO ProgressMeter - NC_035784.1:1847477 176.5 144316000 817682.2 09:49:13.297 INFO ProgressMeter - NC_035784.1:2018871 176.7 144442000 817621.8 09:49:23.365 INFO ProgressMeter - NC_035784.1:2255320 176.8 144574000 817592.4 09:49:33.393 INFO ProgressMeter - NC_035784.1:2442372 177.0 144700000 817532.3 09:49:43.441 INFO ProgressMeter - NC_035784.1:2662830 177.2 144827000 817476.4 09:49:53.514 INFO ProgressMeter - NC_035784.1:2869987 177.3 144963000 817469.4 09:50:03.586 INFO ProgressMeter - NC_035784.1:3086100 177.5 145100000 817468.1 09:50:13.632 INFO ProgressMeter - NC_035784.1:3282280 177.7 145229000 817423.8 09:50:23.699 INFO ProgressMeter - NC_035784.1:3465852 177.8 145371000 817451.1 09:50:33.768 INFO ProgressMeter - NC_035784.1:3648054 178.0 145502000 817416.3 09:50:43.805 INFO ProgressMeter - NC_035784.1:3885048 178.2 145648000 817468.3 09:50:53.844 INFO ProgressMeter - NC_035784.1:4059878 178.3 145776000 817419.1 09:51:03.897 INFO ProgressMeter - NC_035784.1:4347747 178.5 145900000 817346.5 09:51:13.924 INFO ProgressMeter - NC_035784.1:4596427 178.7 146036000 817343.2 09:51:23.941 INFO ProgressMeter - NC_035784.1:4845013 178.8 146185000 817413.3 09:51:33.982 INFO ProgressMeter - NC_035784.1:5088620 179.0 146322000 817414.5 09:51:44.018 INFO ProgressMeter - NC_035784.1:5337236 179.2 146458000 817410.4 09:51:54.040 INFO ProgressMeter - NC_035784.1:5741024 179.3 146603000 817457.6 09:52:04.043 INFO ProgressMeter - NC_035784.1:6075850 179.5 146748000 817506.2 09:52:14.537 INFO ProgressMeter - NC_035784.1:6453318 179.7 146908000 817600.9 09:52:24.556 INFO ProgressMeter - NC_035784.1:6802548 179.8 147064000 817709.2 09:52:34.574 INFO ProgressMeter - NC_035784.1:7162567 180.0 147213000 817778.4 09:52:44.590 INFO ProgressMeter - NC_035784.1:7408100 180.2 147346000 817758.9 09:52:54.612 INFO ProgressMeter - NC_035784.1:7610827 180.3 147487000 817783.4 09:53:04.645 INFO ProgressMeter - NC_035784.1:7802579 180.5 147622000 817773.7 09:53:14.721 INFO ProgressMeter - NC_035784.1:8003310 180.7 147764000 817799.5 09:53:24.758 INFO ProgressMeter - NC_035784.1:8192067 180.9 147899000 817789.6 09:53:34.764 INFO ProgressMeter - NC_035784.1:8361822 181.0 148025000 817732.2 09:53:44.798 INFO ProgressMeter - NC_035784.1:8547251 181.2 148169000 817772.2 09:53:54.877 INFO ProgressMeter - NC_035784.1:8742294 181.4 148315000 817819.8 09:54:04.908 INFO ProgressMeter - NC_035784.1:8918215 181.5 148443000 817771.7 09:54:14.937 INFO ProgressMeter - NC_035784.1:9117391 181.7 148586000 817806.5 09:54:24.989 INFO ProgressMeter - NC_035784.1:9414933 181.9 148728000 817833.9 09:54:35.035 INFO ProgressMeter - NC_035784.1:9833320 182.0 148857000 817790.3 09:54:45.039 INFO ProgressMeter - NC_035784.1:10169074 182.2 149013000 817898.1 09:54:55.074 INFO ProgressMeter - NC_035784.1:10419581 182.4 149152000 817910.2 09:55:05.086 INFO ProgressMeter - NC_035784.1:10721689 182.5 149299000 817967.9 09:55:15.127 INFO ProgressMeter - NC_035784.1:10958675 182.7 149435000 817963.0 09:55:25.170 INFO ProgressMeter - NC_035784.1:11224653 182.9 149579000 818001.8 09:55:35.190 INFO ProgressMeter - NC_035784.1:11617719 183.0 149713000 817987.5 09:55:45.218 INFO ProgressMeter - NC_035784.1:11845124 183.2 149837000 817918.1 09:55:55.244 INFO ProgressMeter - NC_035784.1:12040516 183.4 149971000 817903.6 09:56:05.312 INFO ProgressMeter - NC_035784.1:12269465 183.5 150105000 817885.9 09:56:15.313 INFO ProgressMeter - NC_035784.1:12499246 183.7 150248000 817922.2 09:56:25.354 INFO ProgressMeter - NC_035784.1:12693310 183.9 150375000 817868.5 09:56:35.467 INFO ProgressMeter - NC_035784.1:12898608 184.0 150519000 817901.9 09:56:45.542 INFO ProgressMeter - NC_035784.1:13094016 184.2 150655000 817894.6 09:56:55.552 INFO ProgressMeter - NC_035784.1:13310935 184.4 150793000 817903.0 09:57:05.553 INFO ProgressMeter - NC_035784.1:13487768 184.5 150915000 817825.3 09:57:15.578 INFO ProgressMeter - NC_035784.1:13707637 184.7 151051000 817821.8 09:57:25.599 INFO ProgressMeter - NC_035784.1:13954041 184.9 151186000 817813.2 09:57:35.651 INFO ProgressMeter - NC_035784.1:14184738 185.0 151333000 817867.2 09:57:45.699 INFO ProgressMeter - NC_035784.1:14355843 185.2 151458000 817802.6 09:57:55.731 INFO ProgressMeter - NC_035784.1:14603324 185.4 151609000 817879.6 09:58:05.790 INFO ProgressMeter - NC_035784.1:14821855 185.5 151749000 817895.1 09:58:15.991 INFO ProgressMeter - NC_035784.1:14982938 185.7 151875000 817824.8 09:58:26.000 INFO ProgressMeter - NC_035784.1:15186361 185.9 152020000 817870.9 09:58:36.040 INFO ProgressMeter - NC_035784.1:15401131 186.0 152159000 817882.4 09:58:46.067 INFO ProgressMeter - NC_035784.1:15625362 186.2 152307000 817943.2 09:58:56.124 INFO ProgressMeter - NC_035784.1:15859480 186.4 152439000 817915.9 09:59:06.172 INFO ProgressMeter - NC_035784.1:16090361 186.5 152587000 817975.0 09:59:16.240 INFO ProgressMeter - NC_035784.1:16303422 186.7 152741000 818064.6 09:59:26.241 INFO ProgressMeter - NC_035784.1:16523397 186.9 152894000 818153.7 09:59:36.282 INFO ProgressMeter - NC_035784.1:16700309 187.0 153025000 818122.1 09:59:46.297 INFO ProgressMeter - NC_035784.1:16917114 187.2 153176000 818199.2 09:59:56.306 INFO ProgressMeter - NC_035784.1:17098351 187.4 153309000 818180.6 10:00:06.368 INFO ProgressMeter - NC_035784.1:17301325 187.5 153452000 818211.5 10:00:16.421 INFO ProgressMeter - NC_035784.1:17530703 187.7 153596000 818248.3 10:00:26.495 INFO ProgressMeter - NC_035784.1:17789162 187.9 153755000 818363.4 10:00:36.523 INFO ProgressMeter - NC_035784.1:18015182 188.0 153899000 818401.7 10:00:46.523 INFO ProgressMeter - NC_035784.1:18212897 188.2 154034000 818394.3 10:00:56.588 INFO ProgressMeter - NC_035784.1:18481242 188.4 154186000 818472.4 10:01:06.687 INFO ProgressMeter - NC_035784.1:18784502 188.6 154335000 818532.0 10:01:16.700 INFO ProgressMeter - NC_035784.1:18999892 188.7 154482000 818587.1 10:01:26.736 INFO ProgressMeter - NC_035784.1:19253870 188.9 154621000 818598.1 10:01:36.754 INFO ProgressMeter - NC_035784.1:19526669 189.1 154772000 818673.9 10:01:46.771 INFO ProgressMeter - NC_035784.1:19776649 189.2 154913000 818696.7 10:01:56.807 INFO ProgressMeter - NC_035784.1:20065179 189.4 155055000 818723.4 10:02:06.840 INFO ProgressMeter - NC_035784.1:20330795 189.6 155194000 818734.5 10:02:16.890 INFO ProgressMeter - NC_035784.1:20666504 189.7 155342000 818791.7 10:02:26.923 INFO ProgressMeter - NC_035784.1:20938547 189.9 155481000 818802.7 10:02:36.988 INFO ProgressMeter - NC_035784.1:21171150 190.1 155615000 818785.1 10:02:47.007 INFO ProgressMeter - NC_035784.1:21370414 190.2 155752000 818786.5 10:02:57.010 INFO ProgressMeter - NC_035784.1:21535838 190.4 155873000 818705.1 10:03:07.013 INFO ProgressMeter - NC_035784.1:21743302 190.6 156013000 818723.5 10:03:17.048 INFO ProgressMeter - NC_035784.1:21943807 190.7 156155000 818750.1 10:03:27.077 INFO ProgressMeter - NC_035784.1:22145386 190.9 156297000 818777.0 10:03:37.088 INFO ProgressMeter - NC_035784.1:22469728 191.1 156440000 818810.4 10:03:47.090 INFO ProgressMeter - NC_035784.1:22816528 191.2 156580000 818828.8 10:03:57.150 INFO ProgressMeter - NC_035784.1:23088345 191.4 156722000 818853.4 10:04:07.153 INFO ProgressMeter - NC_035784.1:23344900 191.6 156869000 818908.1 10:04:17.213 INFO ProgressMeter - NC_035784.1:23548874 191.7 156999000 818870.0 10:04:27.224 INFO ProgressMeter - NC_035784.1:23909719 191.9 157136000 818872.0 10:04:37.269 INFO ProgressMeter - NC_035784.1:24165871 192.1 157272000 818866.3 10:04:47.282 INFO ProgressMeter - NC_035784.1:24510941 192.2 157405000 818847.2 10:04:57.377 INFO ProgressMeter - NC_035784.1:24818857 192.4 157540000 818832.8 10:05:07.415 INFO ProgressMeter - NC_035784.1:25024667 192.6 157682000 818858.9 10:05:17.485 INFO ProgressMeter - NC_035784.1:25222759 192.7 157819000 818856.6 10:05:27.515 INFO ProgressMeter - NC_035784.1:25455140 192.9 157970000 818929.8 10:05:37.541 INFO ProgressMeter - NC_035784.1:25643505 193.1 158102000 818904.7 10:05:47.608 INFO ProgressMeter - NC_035784.1:25879998 193.2 158243000 818923.3 10:05:57.666 INFO ProgressMeter - NC_035784.1:26104710 193.4 158381000 818927.1 10:06:07.713 INFO ProgressMeter - NC_035784.1:26337821 193.6 158523000 818952.2 10:06:17.748 INFO ProgressMeter - NC_035784.1:26547084 193.7 158652000 818911.1 10:06:27.766 INFO ProgressMeter - NC_035784.1:26776449 193.9 158801000 818974.4 10:06:37.798 INFO ProgressMeter - NC_035784.1:27008115 194.1 158935000 818959.3 10:06:47.840 INFO ProgressMeter - NC_035784.1:27247319 194.2 159081000 819005.3 10:06:57.887 INFO ProgressMeter - NC_035784.1:27471853 194.4 159217000 818999.4 10:07:07.920 INFO ProgressMeter - NC_035784.1:27718582 194.6 159367000 819066.4 10:07:17.949 INFO ProgressMeter - NC_035784.1:27907989 194.7 159497000 819031.0 10:07:27.992 INFO ProgressMeter - NC_035784.1:28111226 194.9 159635000 819035.6 10:07:38.028 INFO ProgressMeter - NC_035784.1:28385278 195.1 159776000 819056.2 10:07:48.084 INFO ProgressMeter - NC_035784.1:28681792 195.2 159917000 819075.2 10:07:58.183 INFO ProgressMeter - NC_035784.1:28887762 195.4 160047000 819035.0 10:08:08.183 INFO ProgressMeter - NC_035784.1:29081146 195.6 160180000 819017.1 10:08:18.197 INFO ProgressMeter - NC_035784.1:29245158 195.7 160297000 818916.5 10:08:28.261 INFO ProgressMeter - NC_035784.1:29472425 195.9 160435000 818919.7 10:08:38.272 INFO ProgressMeter - NC_035784.1:29684682 196.1 160575000 818936.9 10:08:48.298 INFO ProgressMeter - NC_035784.1:29925313 196.2 160714000 818947.9 10:08:58.317 INFO ProgressMeter - NC_035784.1:30133313 196.4 160855000 818969.5 10:09:08.319 INFO ProgressMeter - NC_035784.1:30435678 196.6 161003000 819027.9 10:09:18.325 INFO ProgressMeter - NC_035784.1:30706617 196.7 161140000 819030.0 10:09:28.366 INFO ProgressMeter - NC_035784.1:31014897 196.9 161284000 819065.2 10:09:38.395 INFO ProgressMeter - NC_035784.1:31309939 197.1 161418000 819050.5 10:09:48.402 INFO ProgressMeter - NC_035784.1:31594758 197.2 161557000 819062.6 10:09:58.459 INFO ProgressMeter - NC_035784.1:31919491 197.4 161700000 819091.5 10:10:08.460 INFO ProgressMeter - NC_035784.1:32231896 197.6 161834000 819078.7 10:10:18.460 INFO ProgressMeter - NC_035784.1:32563917 197.7 161978000 819116.6 10:10:28.530 INFO ProgressMeter - NC_035784.1:32750867 197.9 162106000 819068.7 10:10:38.575 INFO ProgressMeter - NC_035784.1:33041042 198.1 162260000 819153.9 10:10:48.628 INFO ProgressMeter - NC_035784.1:33307889 198.2 162392000 819127.4 10:10:58.678 INFO ProgressMeter - NC_035784.1:33626004 198.4 162536000 819161.7 10:11:08.723 INFO ProgressMeter - NC_035784.1:33886256 198.6 162662000 819105.6 10:11:18.744 INFO ProgressMeter - NC_035784.1:34125624 198.8 162795000 819086.4 10:11:28.753 INFO ProgressMeter - 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NC_035789.1:8861217 394.8 320799000 812581.4 13:27:31.072 INFO ProgressMeter - NC_035789.1:9161857 395.0 320927000 812561.1 13:27:41.135 INFO ProgressMeter - NC_035789.1:9454173 395.1 321061000 812555.3 13:27:51.162 INFO ProgressMeter - NC_035789.1:9850861 395.3 321212000 812593.8 13:28:01.197 INFO ProgressMeter - NC_035789.1:10195798 395.5 321370000 812649.7 13:28:11.279 INFO ProgressMeter - NC_035789.1:10531378 395.6 321496000 812623.0 13:28:21.366 INFO ProgressMeter - NC_035789.1:10899306 395.8 321641000 812644.2 13:28:31.413 INFO ProgressMeter - NC_035789.1:11318421 396.0 321779000 812649.0 13:28:41.416 INFO ProgressMeter - NC_035789.1:11541307 396.1 321911000 812640.2 13:28:51.481 INFO ProgressMeter - NC_035789.1:11812924 396.3 322050000 812647.0 13:29:01.539 INFO ProgressMeter - NC_035789.1:11998974 396.5 322171000 812608.6 13:29:11.579 INFO ProgressMeter - NC_035789.1:12273143 396.6 322313000 812623.8 13:29:21.595 INFO ProgressMeter - NC_035789.1:12592286 396.8 322454000 812637.2 13:29:31.619 INFO ProgressMeter - NC_035789.1:12932123 397.0 322606000 812678.1 13:29:41.678 INFO ProgressMeter - NC_035789.1:13228881 397.1 322737000 812664.9 13:29:51.700 INFO ProgressMeter - NC_035789.1:13473358 397.3 322874000 812668.1 13:30:01.722 INFO ProgressMeter - NC_035789.1:13723364 397.5 323012000 812673.8 13:30:11.769 INFO ProgressMeter - NC_035789.1:13936346 397.6 323149000 812676.1 13:30:21.788 INFO ProgressMeter - NC_035789.1:14216373 397.8 323288000 812684.4 13:30:31.841 INFO ProgressMeter - NC_035789.1:14493079 398.0 323414000 812658.8 13:30:41.895 INFO ProgressMeter - NC_035789.1:14736924 398.1 323552000 812663.4 13:30:51.978 INFO ProgressMeter - NC_035789.1:15004024 398.3 323688000 812662.0 13:31:02.018 INFO ProgressMeter - NC_035789.1:15226776 398.5 323819000 812649.5 13:31:12.032 INFO ProgressMeter - NC_035789.1:15469806 398.6 323958000 812657.9 13:31:22.059 INFO ProgressMeter - NC_035789.1:15725573 398.8 324086000 812638.4 13:31:32.139 INFO ProgressMeter - NC_035789.1:15980265 399.0 324230000 812657.1 13:31:42.213 INFO ProgressMeter - NC_035789.1:16280166 399.1 324370000 812666.0 13:31:52.262 INFO ProgressMeter - NC_035789.1:16564817 399.3 324504000 812660.7 13:32:02.267 INFO ProgressMeter - NC_035789.1:16820372 399.5 324631000 812639.4 13:32:12.304 INFO ProgressMeter - NC_035789.1:17120437 399.6 324766000 812637.1 13:32:22.339 INFO ProgressMeter - NC_035789.1:17424189 399.8 324902000 812637.3 13:32:32.349 INFO ProgressMeter - NC_035789.1:17703457 400.0 325035000 812630.8 13:32:42.400 INFO ProgressMeter - NC_035789.1:17976854 400.1 325177000 812645.5 13:32:52.403 INFO ProgressMeter - NC_035789.1:18268494 400.3 325308000 812634.3 13:33:02.407 INFO ProgressMeter - NC_035789.1:18538053 400.5 325453000 812658.1 13:33:12.423 INFO ProgressMeter - NC_035789.1:18858965 400.6 325598000 812681.4 13:33:22.436 INFO ProgressMeter - NC_035789.1:19098271 400.8 325728000 812667.3 13:33:32.487 INFO ProgressMeter - NC_035789.1:19298032 401.0 325861000 812659.5 13:33:42.545 INFO ProgressMeter - NC_035789.1:19554952 401.1 325990000 812641.5 13:33:52.586 INFO ProgressMeter - NC_035789.1:19781705 401.3 326126000 812641.5 13:34:02.620 INFO ProgressMeter - NC_035789.1:19993965 401.5 326256000 812626.8 13:34:12.629 INFO ProgressMeter - NC_035789.1:20278235 401.7 326394000 812632.9 13:34:22.682 INFO ProgressMeter - NC_035789.1:20514354 401.8 326518000 812602.6 13:34:32.705 INFO ProgressMeter - NC_035789.1:20801698 402.0 326658000 812613.2 13:34:42.718 INFO ProgressMeter - NC_035789.1:21063918 402.2 326794000 812614.2 13:34:52.748 INFO ProgressMeter - NC_035789.1:21409332 402.3 326928000 812609.6 13:35:02.763 INFO ProgressMeter - NC_035789.1:21636802 402.5 327062000 812605.5 13:35:12.820 INFO ProgressMeter - NC_035789.1:21846372 402.7 327190000 812585.2 13:35:22.866 INFO ProgressMeter - NC_035789.1:22120703 402.8 327332000 812599.9 13:35:32.905 INFO ProgressMeter - NC_035789.1:22322058 403.0 327469000 812602.5 13:35:42.946 INFO ProgressMeter - NC_035789.1:22674822 403.2 327616000 812629.8 13:35:52.995 INFO ProgressMeter - NC_035789.1:22984333 403.3 327743000 812607.2 13:36:03.035 INFO ProgressMeter - NC_035789.1:23190765 403.5 327848000 812530.5 13:36:13.090 INFO ProgressMeter - NC_035789.1:23620329 403.7 327979000 812517.7 13:36:23.150 INFO ProgressMeter - NC_035789.1:24222351 403.8 328110000 812504.7 13:36:33.185 INFO ProgressMeter - NC_035789.1:24679388 404.0 328235000 812477.8 13:36:43.221 INFO ProgressMeter - NC_035789.1:25086803 404.2 328389000 812522.5 13:36:53.277 INFO ProgressMeter - NC_035789.1:25362064 404.3 328536000 812549.3 13:37:03.300 INFO ProgressMeter - NC_035789.1:25739633 404.5 328675000 812557.4 13:37:13.347 INFO ProgressMeter - NC_035789.1:26132085 404.7 328809000 812552.3 13:37:23.419 INFO ProgressMeter - NC_035789.1:26526672 404.8 328949000 812561.2 13:37:33.449 INFO ProgressMeter - NC_035789.1:26909515 405.0 329087000 812566.5 13:37:43.457 INFO ProgressMeter - NC_035789.1:27154035 405.2 329227000 812577.5 13:37:53.514 INFO ProgressMeter - NC_035789.1:27386491 405.3 329356000 812559.8 13:38:03.544 INFO ProgressMeter - NC_035789.1:27650626 405.5 329506000 812594.7 13:38:13.571 INFO ProgressMeter - NC_035789.1:28061287 405.7 329644000 812600.1 13:38:23.596 INFO ProgressMeter - NC_035789.1:28473622 405.8 329774000 812585.9 13:38:33.652 INFO ProgressMeter - NC_035789.1:28889107 406.0 329911000 812587.9 13:38:43.659 INFO ProgressMeter - NC_035789.1:29417637 406.2 330034000 812557.1 13:38:53.683 INFO ProgressMeter - NC_035789.1:29716371 406.3 330155000 812520.8 13:39:03.723 INFO ProgressMeter - NC_035789.1:29962364 406.5 330294000 812528.2 13:39:13.781 INFO ProgressMeter - NC_035789.1:30212971 406.7 330429000 812525.3 13:39:23.797 INFO ProgressMeter - NC_035789.1:30611947 406.8 330564000 812523.7 13:39:33.843 INFO ProgressMeter - NC_035789.1:30968977 407.0 330710000 812548.2 13:39:43.863 INFO ProgressMeter - NC_035789.1:31209932 407.2 330835000 812521.9 13:39:53.879 INFO ProgressMeter - NC_035789.1:31419205 407.3 330965000 812508.1 13:40:03.889 INFO ProgressMeter - NC_035789.1:31706145 407.5 331094000 812492.0 13:40:13.930 INFO ProgressMeter - NC_035789.1:32075750 407.7 331221000 812470.0 13:40:23.958 INFO ProgressMeter - NC_035789.1:32506993 407.8 331365000 812490.1 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),6591.31003614688,Cpu time(s),6492.355722362806 13:40:28.550 INFO ProgressMeter - NC_035789.1:32649011 407.9 331430445 812498.1 13:40:28.550 INFO ProgressMeter - Traversal complete. Processed 331430445 total variants in 407.9 minutes. 13:40:28.589 INFO GenotypeGVCFs - Shutting down engine [June 13, 2022 at 1:40:28 PM PDT] org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs done. Elapsed time: 407.94 minutes. Runtime.totalMemory()=2810183680