# Circos config file.

karyotype = data/karyotype/karyotype.cvir.txt

chromosomes_units = 100000

# chromosome subset
chromosomes_display_default = no
chromosomes                 = cvirNC_035789.1

<plots>

    <plot>

    # The type sets the format of the track.

    type = histogram
    file = data/circos-genes-controls_females-mean_fpkm.tab

    # The track is confined within r0/r1 radius limits. When using the
    # relative "r" suffix, the values are relative to the position of the
    # ideogram.

    r1   = 0.99r
    r0   = 0.85r

    # Histograms can have both a fill and outline. The default outline is 1px thick black. 

    fill_color = vdpurple

    # To turn off default outline, set the outline thickness to zero. If
    # you want to permanently disable this default, edit
    # etc/tracks/histogram.conf in the Circos distribution.

    thickness = 0p

    # Do not join histogram bins that do not abut.

    extend_bin = no

    <<include purple.backgrounds.conf>>
    </plot>

    <plot>

    # The type sets the format of the track.

    type = histogram
    file = data/circos-genes-exposed_females-mean_fpkm.tab

    # The track is confined within r0/r1 radius limits. When using the
    # relative "r" suffix, the values are relative to the position of the
    # ideogram.

    r1   = 0.84r
    r0   = 0.68r

    # Histograms can have both a fill and outline. The default outline is 1px thick black. 

    fill_color = vvdpurple

    # To turn off default outline, set the outline thickness to zero. If
    # you want to permanently disable this default, edit
    # etc/tracks/histogram.conf in the Circos distribution.

    thickness = 0p

    # Do not join histogram bins that do not abut.

    extend_bin = no

    <<include purple.backgrounds.conf>>
    </plot>

    <plot>

    # The type sets the format of the track.

    type = histogram
    file = data/circos-genes-controls_females-mean_methylation.tab

    # The track is confined within r0/r1 radius limits. When using the
    # relative "r" suffix, the values are relative to the position of the
    # ideogram.

    r1   = 0.67r
    r0   = 0.51r

    # Histograms can have both a fill and outline. The default outline is 1px thick black. 

    fill_color = vdred

    # To turn off default outline, set the outline thickness to zero. If
    # you want to permanently disable this default, edit
    # etc/tracks/histogram.conf in the Circos distribution.

    thickness = 0p

    # Do not join histogram bins that do not abut.

    extend_bin = no

    <<include red.backgrounds.conf>>
    </plot>

    <plot>

    # The type sets the format of the track.

    type = histogram
    file = data/circos-genes-exposed_females-mean_methylation.tab

    # The track is confined within r0/r1 radius limits. When using the
    # relative "r" suffix, the values are relative to the position of the
    # ideogram.

    r1   = 0.50r
    r0   = 0.34r

    # Histograms can have both a fill and outline. The default outline is 1px thick black. 

    fill_color = vvdred

    # To turn off default outline, set the outline thickness to zero. If
    # you want to permanently disable this default, edit
    # etc/tracks/histogram.conf in the Circos distribution.

    thickness = 0p

    # Do not join histogram bins that do not abut.

    extend_bin = no

    <<include red.backgrounds.conf>>
    </plot>

    <plot>

    # The type sets the format of the track.

    type = histogram
    file = data/circos-genes-controls-females-mean_transcripts.tab

    # The track is confined within r0/r1 radius limits. When using the
    # relative "r" suffix, the values are relative to the position of the
    # ideogram.

    r1   = 0.33r
    r0   = 0.17r

    # Histograms can have both a fill and outline. The default outline is 1px thick black. 

    fill_color = dblue

    # To turn off default outline, set the outline thickness to zero. If
    # you want to permanently disable this default, edit
    # etc/tracks/histogram.conf in the Circos distribution.

    thickness = 0p

    # Do not join histogram bins that do not abut.

    extend_bin = no

    <<include backgrounds.conf>>
    </plot>

    <plot>

    # The type sets the format of the track.

    type = histogram
    file = data/circos-genes-exposed-females-mean_transcripts.tab

    # The track is confined within r0/r1 radius limits. When using the
    # relative "r" suffix, the values are relative to the position of the
    # ideogram.

    r1   = 0.166r
    r0   = 0.00r

    # Histograms can have both a fill and outline. The default outline is 1px thick black. 

    fill_color = vvdblue

    # To turn off default outline, set the outline thickness to zero. If
    # you want to permanently disable this default, edit
    # etc/tracks/histogram.conf in the Circos distribution.

    thickness = 0p

    # Do not join histogram bins that do not abut.

    extend_bin = no

    <<include backgrounds.conf>>
    </plot>

</plots>


<<include ideogram.conf>>
<<include ticks.conf>>

<image>
    # import defaults from Circos distribution
    <<include etc/image.conf>>

    radius* = 1500p
</image>

# default colors, fonts and fill patterns
<<include etc/colors_fonts_patterns.conf>>

# system and debug parameters
<<include etc/housekeeping.conf>>