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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| 00-01-bismark.sh | 2024-06-06 09:14 | 3.8K | |
| 00-18-differential-g..> | 2024-06-06 09:14 | 39K | |
| 00-40-gene-methylati..> | 2024-06-06 09:14 | 18K | |
| 00-42-predominant-is..> | 2024-06-06 09:14 | 104K | |
| 00-52.1-rnaseq-relat..> | 2024-06-06 09:14 | 10K | |
| 00-56-matrix-synergy..> | 2024-06-06 09:14 | 6.8K | |
| 00-61_matrix_correla..> | 2024-06-06 09:14 | 7.4K | |
| 00-61_matrix_correla..> | 2024-06-06 09:14 | 15K | |
| 00-61_matrix_correla..> | 2024-06-06 09:14 | - | |
| 00-65-exon-coverage.qmd | 2024-06-06 09:14 | 24K | |
| 00-75-max-transcript..> | 2024-06-06 09:14 | 58K | |
| 00-77-asca-exon.Rmd | 2024-06-06 09:14 | 15K | |
| 00-78-asca-methdiff.qmd | 2024-06-06 09:14 | 26K | |
| 00-20220921-cvir-cea..> | 2024-06-06 09:14 | 3.3K | |
| 00-Genomic-Location-..> | 2024-06-06 09:14 | 39K | |
| 01.01-supplemental-t..> | 2024-06-06 09:14 | 3.5K | |
| 02-te-all-copy.sh | 2022-02-22 11:32 | 1.3K | |
| 02-te-all.sh | 2024-06-06 09:14 | 1.3K | |
| 04-TE-intersect-meth..> | 2022-02-22 08:38 | 1.1K | |
| 07-TE-intersect-meth..> | 2024-06-06 09:14 | 2.2K | |
| 10-TEm-TEcn.Rmd | 2024-06-06 09:14 | 284 | |
| 11-RNAseq-snps.Rmd | 2024-06-06 09:14 | 8.1K | |
| 11.1-haplotype.sh | 2024-06-06 09:14 | 1.1K | |
| 11.2-haplotype.sh | 2024-06-06 09:14 | 1.1K | |
| 12-lncRNA.Rmd | 2024-06-06 09:14 | 1.2K | |
| 13-lncRNA-kallisto.Rmd | 2024-06-06 09:14 | 1.2K | |
| 14-RNA-kallisto.Rmd | 2024-06-06 09:14 | 2.3K | |
| 15-RNAseq.Rmd | 2024-06-06 09:14 | 48 | |
| 16-DML-annotation.Rmd | 2024-06-06 09:14 | 1.2K | |
| 17-Swiss-Prot-Annota..> | 2024-06-06 09:14 | 9.0K | |
| 17.1-GO-and-GOslim-C..> | 2024-06-06 09:14 | 10K | |
| 18-differential-gene..> | 2023-12-14 13:34 | 27K | |
| 19-exon-expression.Rmd | 2024-06-06 09:14 | 2.6K | |
| 20-BS-Snper.Rmd | 2024-06-06 09:14 | 810 | |
| 31-Transcript-viz.Rmd | 2024-06-06 09:14 | 3.8K | |
| 31-Transcript-viz.html | 2024-06-06 09:14 | 1.5M | |
| 32-Transcript-viz.Rmd | 2024-06-06 09:14 | 2.7K | |
| 32-Transcript-viz.html | 2024-06-06 09:14 | 1.6M | |
| 32-Transcript-viz.log | 2024-06-06 09:14 | 30 | |
| 32-Transcript-viz.tex | 2024-06-06 09:14 | 14K | |
| 33-isoform-count_met..> | 2024-06-06 09:14 | 4.0K | |
| 34-transcript-counts..> | 2024-06-06 09:14 | 21K | |
| 40-gene-methylation.Rmd | 2023-12-14 13:34 | 18K | |
| 41-expression-methyl..> | 2024-06-06 09:14 | 125 | |
| 42-predominant-isofo..> | 2023-12-14 13:34 | 70K | |
| 42-predominant_isofo..> | 2024-06-06 09:14 | 35K | |
| 43-exon-intron-methy..> | 2024-06-06 09:14 | 5.7K | |
| 44-methylation-cov.m..> | 2024-06-06 09:14 | - | |
| 44-methylation-cov.md | 2024-06-06 09:14 | 3.4K | |
| 44-methylation-cov.qmd | 2024-06-06 09:14 | 784 | |
| 44-mofa.Rmd | 2024-06-06 09:14 | 1.1K | |
| 45-oyster-table.qmd | 2024-06-06 09:14 | 689 | |
| 50-circos-formatting..> | 2024-06-06 09:14 | 40K | |
| 51-snps-genetics.Rmd | 2024-06-06 09:14 | 10K | |
| 51-snps-genetics.md | 2024-06-06 09:14 | 24K | |
| 52-genetic-relatedne..> | 2024-06-06 09:14 | 12K | |
| 52-genetic-relatedne..> | 2024-06-06 09:14 | 93K | |
| 52.1-rnaseq-relatedn..> | 2023-12-14 13:34 | 10K | |
| 53-revisit-epi-SNPs.Rmd | 2024-06-06 09:14 | 14K | |
| 53-revisit-epi-SNPs...> | 2024-04-01 08:17 | 1.3M | |
| 53-revisit-epi-SNPs.md | 2024-06-06 09:14 | 17K | |
| 53-revisit-epi-SNPs_..> | 2024-06-06 09:14 | - | |
| 54-methylkit.Rmd | 2024-06-06 09:14 | 1.7K | |
| 54-methylkit_cache/ | 2024-06-06 09:14 | - | |
| 55-methylation-matri..> | 2024-06-06 09:14 | 4.3K | |
| 56-matrix-synergy.Rmd | 2023-12-14 13:34 | 6.8K | |
| 56-matrix-synergy.md | 2024-06-06 09:14 | 37K | |
| 56-matrix-synergy_fi..> | 2024-06-06 09:14 | - | |
| 60-expression-fpkm-c..> | 2024-06-06 09:14 | 19K | |
| 61_matrix_correlatio..> | 2023-12-14 13:34 | 6.4K | |
| 61_matrix_correlatio..> | 2023-12-14 13:34 | 15K | |
| 61_matrix_correlatio..> | 2023-12-14 13:34 | - | |
| 63-Bogan-spurious.Rmd | 2024-06-06 09:14 | 22K | |
| 64-exon-expression.Rmd | 2024-06-06 09:14 | 12K | |
| 64-exon-expression.html | 2024-06-06 09:14 | 805K | |
| 64-exon-expression.md | 2024-06-06 09:14 | 9.3K | |
| 64-exon-expression_f..> | 2024-06-06 09:14 | - | |
| 65-exon-coverage.html | 2024-06-06 09:14 | 27K | |
| 65-exon-coverage.qmd | 2023-12-14 13:44 | 6.9K | |
| 65-exon-coverage_files/ | 2024-06-06 09:14 | - | |
| 65.2-exon-coverage.qmd | 2023-12-12 15:15 | 5.2K | |
| 65.5-exon-coverage.qmd | 2024-06-06 09:14 | 5.2K | |
| 66-exon-coverage.qmd | 2024-06-06 09:14 | 12K | |
| 67-exon-fold-group.html | 2024-06-06 09:14 | 1.4M | |
| 67-exon-fold-group.qmd | 2024-06-06 09:14 | 17K | |
| 67-exon-fold-group_f..> | 2024-06-06 09:14 | - | |
| 68-female-exon-fold.qmd | 2024-06-06 09:14 | 15K | |
| 69-wgcna.qmd | 2024-06-06 09:14 | 13K | |
| 70-male-exon-fold.qmd | 2024-06-06 09:14 | 14K | |
| 71-female-exon-ind.qmd | 2024-06-06 09:14 | 12K | |
| 72-exon-data-rfmt.qmd | 2024-06-06 09:14 | 8.2K | |
| 73-gene-methylation.qmd | 2024-06-06 09:14 | 8.1K | |
| 74-PI-enrichment.qmd | 2024-06-06 09:14 | 1.6K | |
| 76-meth-maxtranscrip..> | 2024-06-06 09:14 | 48K | |
| 76-meth-maxtranscrip..> | 2024-06-06 09:14 | 8.2K | |
| 76-meth-maxtranscrip..> | 2024-06-06 09:14 | - | |
| 80-hisat-deseq2.qmd | 2024-06-06 09:24 | 576 | |
| 98-enrichment-result..> | 2024-06-06 09:14 | 19K | |
| 99-SR-bu.sh | 2024-06-06 09:14 | 253 | |
| 20220131_cvir_hisat2..> | 2024-06-06 09:14 | 4.8K | |
| 20220221_MethInterse..> | 2024-06-06 09:14 | 1.8K | |
| @eaDir/ | 2024-05-16 09:49 | - | |
| CoV_exp_x_meth.Rmd | 2024-06-06 09:14 | 2.0K | |
| Exon-intersect-meth.Rmd | 2024-06-06 09:14 | 2.3K | |
| Gene-intersect-meth.Rmd | 2024-06-06 09:14 | 2.0K | |
| General-Methylation-..> | 2024-06-06 09:14 | 18K | |
| General-Methylation-..> | 2024-06-06 09:14 | 639K | |
| Generating-Genome-Fe..> | 2024-06-06 09:14 | 140K | |
| Genomic-Location-of-..> | 2024-06-06 09:14 | 22K | |
| Genomic-Location-of-..> | 2023-12-14 13:34 | 32K | |
| GenomicGFF-intersect..> | 2024-06-06 09:14 | 2.5K | |
| Intron-intersect-met..> | 2024-06-06 09:14 | 2.7K | |
| TE-meth.r | 2022-02-23 06:57 | 1.0K | |
| circos-cvir-ceabigr/ | 2024-06-06 09:14 | - | |
| comprehensive-csv.Rmd | 2024-06-06 09:14 | 3.8K | |
| eqtl_analysis.Rmd | 2024-06-06 09:14 | 11K | |
| exon-methylation-exp..> | 2024-06-06 09:14 | 12K | |
| fem-meth-exp-xy.pdf | 2023-12-14 13:34 | 3.6M | |
| fem-pred-isoform-met..> | 2023-12-14 13:34 | 240K | |
| gene-expression-anal..> | 2024-06-06 09:14 | 41K | |
| gene-methylation-exp..> | 2024-06-06 09:14 | 42K | |
| mqtl_analysis.Rmd | 2024-06-06 09:14 | 9.1K | |
| output/ | 2024-06-06 09:14 | - | |
| pca_gen_meth_corr.Rmd | 2024-06-06 09:14 | 897 | |
| plot.png | 2024-06-06 09:14 | 1.4M | |
| rsconnect/ | 2024-06-06 09:14 | - | |
| uniprot-retrieval.py | 2024-06-06 09:14 | 3.1K | |