FastQCFastQC Report
Mon 17 Oct 2022
26B_S68_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename26B_S68_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6747515
Sequences flagged as poor quality0
Sequence length20-86
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTCATGGACAAAAACAAACCACCGGCTAACTTCTGAACCAATCAGGTA406360.6022365270770054No Hit
GAATGTTCATGGACAAAAACAAACCACCGGCTAACTTCTGAACCAATCAG246540.3653789580312159No Hit
ACTGAATGTTCATGGACAAAAACAAACCACCGGCTAACTTCTGAACCAAT182940.2711220352974391No Hit
GAGAGAGAAAAGCGATGTTGTTGTTTCAAACCTGAACCTGATGTCTTAAT180630.26769855272644816No Hit
ACAAAAACAAACCACCGGCTAACTTCTGAACCAATCAGGTACTGCCAATG133900.19844342695051437No Hit
GAGAGAAAAGCGATGTTGTTGTTTCAAACCTGAACCTGATGTCTTAATTA98720.14630571402953532No Hit
ACAAAATAAATTCCTACCTG81980.12149658059300351No Hit
ATGGACAAAAACAAACCACCGGCTAACTTCTGAACCAATCAGGTACTGCC81920.12140765896778295No Hit
CATGTCAATAAATCACATCAAATGC79140.11728762366589773No Hit
CGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGA68110.10094086489618771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)