FastQCFastQC Report
Sun 7 Aug 2022
20C_S104_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename20C_S104_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4405194
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA96030.21799266956233934No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACG88540.20099001315265572No Hit
AATGCCAGGGACTTTCAGACTCAACCCACTTTTTGTACTGTACATAACAT56050.12723616712453525No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATATCGGAAGAGCACACG44520.10106251847251221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)