[2022-08-08 12:08:20,391] multiqc [DEBUG ] This is MultiQC v1.12 [2022-08-08 12:08:20,391] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2022-08-08 12:08:20,392] multiqc [DEBUG ] No MultiQC config found: /home/shared/8TB_HDD_02/mattgeorgephd/.multiqc_config.yaml [2022-08-08 12:08:20,392] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-08-08 12:08:20,392] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc . [2022-08-08 12:08:21,384] multiqc [DEBUG ] Latest MultiQC version is v1.12 [2022-08-08 12:08:21,384] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc . [2022-08-08 12:08:21,384] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_02/mattgeorgephd/berdahl-sockeye-salmon/fastqc/trimmed [2022-08-08 12:08:21,385] multiqc [DEBUG ] Template : default [2022-08-08 12:08:21,385] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2022-08-08 12:08:21,386] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2022-08-08 12:08:21,386] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp0gqbt5go [2022-08-08 12:08:21,472] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/mattgeorgephd/berdahl-sockeye-salmon/fastqc/trimmed [2022-08-08 12:08:21,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 20C_S104_R1_fastqc.html [2022-08-08 12:08:21,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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search pattern filesize limit: 21C_S105_R1_fastqc.html [2022-08-08 12:08:22,732] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 21C_S105_R1_fastqc.html [2022-08-08 12:08:22,732] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 21C_S105_R1_fastqc.html [2022-08-08 12:08:22,733] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 21C_S105_R1_fastqc.html [2022-08-08 12:08:22,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 21C_S105_R1_fastqc.html [2022-08-08 12:08:22,779] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,823] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 12C_S96_R1_fastqc.html [2022-08-08 12:08:22,828] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,829] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 30C_S114_R1_fastqc.html [2022-08-08 12:08:22,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,879] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,879] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,879] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,879] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,879] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 24C_S108_R1_fastqc.html [2022-08-08 12:08:22,927] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,929] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:22,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 06C_S90_R1_fastqc.html [2022-08-08 12:08:23,719] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2022-08-08 12:08:23,720] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2022-08-08 12:08:24,638] multiqc.modules.fastqc.fastqc [INFO ] Found 30 reports [2022-08-08 12:08:25,045] multiqc [INFO ] Compressing plot data [2022-08-08 12:08:25,325] multiqc [INFO ] Report : multiqc_report.html [2022-08-08 12:08:25,325] multiqc [INFO ] Data : multiqc_data [2022-08-08 12:08:25,325] multiqc [DEBUG ] Moving data file from '/tmp/tmp0gqbt5go/multiqc_data' to '/home/shared/8TB_HDD_02/mattgeorgephd/berdahl-sockeye-salmon/fastqc/trimmed/multiqc_data' [2022-08-08 12:08:25,382] multiqc [INFO ] MultiQC complete