FastQCFastQC Report
Mon 8 Aug 2022
19C_S103_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename19C_S103_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7673749
Sequences flagged as poor quality0
Sequence length20-86
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAA467830.6096498595406236No Hit
TGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTT288170.3755270077246467No Hit
AAGAAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTATGA281560.3669132258560972No Hit
TATAAGAAATAAGTAGAAAATACAAATCATTACATGTACAATTATGTCTA164820.21478419479188074No Hit
AGATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAG156110.20343381051426102No Hit
ATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTTTATTGGAAATT152340.19852095761797786No Hit
TACAAATCATTACATGTACAATTATGTCTATGAAAACTGATGATTTTATG131470.1713243422478374No Hit
TAGAAAATACAAATCATTACATGTACAATTATGTCTATGAAAACTGATGA121760.15867081396589855No Hit
AACAGATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTG119690.15597330587695793No Hit
TGATTCTATGCCTGCAGTGAGCCATTGAAGCTTTATTGGAAATTCTTATT104510.13619157989139338No Hit
AAACTGATGATTTTATGCAATAATAAATATGAAAAATGATCATAGCTTTT103510.13488843588707422No Hit
TCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGCTTTATTGG93260.12153120984280304No Hit
GATGTGTTTCTGGATATGTTGATTCTATGCCTGCAGTGAGCCATTGAAGC87090.11349081133615394No Hit
TCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACG86910.11325624541537652No Hit
CGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGA86240.11238313893248268No Hit
AAATACAAATCATTACATGTACAATTATGTCTATGAAAACTGATGATTTT81580.10631048787235549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)